Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99836 * 2 1 4 4 N 1.34770 * 120.00339 * 179.97438 * 2 1 3 5 5 C 1.39955 * 120.00345 * 185.75144 * 4 2 1 6 6 C 1.38991 * 119.99985 * 24.79294 * 5 4 2 7 7 C 1.38215 * 120.22414 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.22010 * 359.76619 * 7 6 5 9 9 C 1.39576 * 119.99636 * 0.53221 * 8 7 6 10 10 C 1.47858 * 120.11184 * 179.71829 * 9 8 7 11 11 O 1.21554 * 120.00211 * 154.58542 * 10 9 8 12 12 N 1.34778 * 119.99808 * 334.58742 * 10 9 8 13 13 C 1.47584 * 134.49222 * 174.78166 * 12 10 9 14 14 C 1.53949 * 86.11459 * 155.36169 * 13 12 10 15 15 O 1.42898 * 113.74025 * 269.15382 * 14 13 12 16 16 C 1.50702 * 113.73863 * 137.95493 * 14 13 12 17 17 H 1.08006 * 119.99687 * 1.92797 * 16 14 13 18 18 C 1.37876 * 120.00014 * 181.91868 * 16 14 13 19 19 N 1.31521 * 119.99723 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00090 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47020 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47184 * 300.00517 * 20 18 16 23 23 H 1.48501 * 109.47340 * 60.00586 * 20 18 16 24 24 C 1.47816 * 134.45840 * 354.65959 * 12 10 9 25 25 C 1.38592 * 120.00118 * 204.82376 * 5 4 2 26 26 C 1.50707 * 120.11120 * 359.97112 * 25 5 4 27 27 H 1.09002 * 109.46955 * 240.00815 * 1 2 3 28 28 H 1.09000 * 109.46901 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46699 * 120.00345 * 1 2 3 30 30 H 0.97000 * 119.99804 * 5.74514 * 4 2 1 31 31 H 1.07994 * 119.88742 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.88942 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.99959 * 180.28312 * 8 7 6 34 34 H 1.09001 * 113.76840 * 41.06226 * 13 12 10 35 35 H 1.08994 * 113.87272 * 269.67460 * 13 12 10 36 36 H 0.96698 * 114.00032 * 178.07414 * 15 14 13 37 37 H 0.96998 * 119.99746 * 179.97438 * 19 18 16 38 38 H 1.08995 * 113.77302 * 90.37484 * 24 12 10 39 39 H 1.09002 * 113.82802 * 318.90810 * 24 12 10 40 40 H 1.08995 * 109.47230 * 274.50596 * 26 25 5 41 41 H 1.09005 * 109.46734 * 34.50262 * 26 25 5 42 42 H 1.08999 * 109.46889 * 154.50614 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5752 -1.1701 0.1220 6 6 4.2213 -0.1053 0.7388 7 6 5.5980 -0.1037 0.8617 8 6 6.3400 -1.1618 0.3770 9 6 5.7011 -2.2330 -0.2496 10 6 6.4940 -3.3649 -0.7752 11 8 5.9842 -4.4623 -0.8908 12 7 7.7821 -3.1799 -1.1262 13 6 8.8687 -4.0699 -1.5793 14 6 9.4736 -2.8199 -2.2439 15 8 9.0464 -2.6220 -3.5931 16 6 10.9673 -2.7075 -2.0781 17 1 11.5128 -3.4819 -1.5593 18 6 11.6374 -1.6161 -2.5890 19 7 10.9729 -0.6730 -3.2205 20 14 13.4886 -1.4764 -2.3828 21 1 13.9637 -0.2198 -3.0159 22 1 13.8258 -1.4599 -0.9367 23 1 14.1481 -2.6380 -3.0316 24 6 8.6725 -2.0033 -1.2138 25 6 4.3117 -2.2345 -0.3733 26 6 3.6137 -3.3904 -1.0426 27 1 -0.3633 -0.5137 0.8901 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6996 -2.0051 -0.0832 31 1 3.6457 0.7233 1.1240 32 1 6.0945 0.7263 1.3423 33 1 7.4151 -1.1590 0.4791 34 1 8.5455 -4.8318 -2.2887 35 1 9.4752 -4.4735 -0.7687 36 1 9.4010 -1.8220 -4.0046 37 1 11.4443 0.0949 -3.5796 38 1 9.2204 -1.7974 -0.2944 39 1 8.1929 -1.1183 -1.6320 40 1 3.2948 -4.1088 -0.2875 41 1 2.7427 -3.0236 -1.5859 42 1 4.2986 -3.8747 -1.7386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331911419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -50.972761 kcal Electronic energy + Delta-G solvation = -26640.629901 eV Core-core repulsion = 22780.240830 eV Total energy + Delta-G solvation = -3860.389070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85747 -39.73914 -38.38171 -37.08386 -35.01891 -33.97407 -32.33081 -32.22401 -31.26111 -29.53132 -28.11730 -26.77194 -25.35653 -25.31387 -23.52981 -21.49844 -21.04961 -19.88171 -18.68210 -17.86067 -17.34492 -16.98936 -16.02702 -15.90921 -15.61345 -15.29924 -14.93227 -14.91010 -14.38628 -14.15514 -14.02460 -13.68498 -13.33756 -13.06725 -12.96077 -12.79399 -12.61975 -12.47328 -12.11834 -12.01060 -11.80778 -11.67253 -11.56808 -11.20099 -11.08101 -11.02932 -10.58754 -10.53024 -10.29800 -10.01959 -9.58167 -9.17559 -8.77190 -8.66937 -8.42075 -8.04295 -7.81540 -6.39110 -4.49916 1.10432 1.29943 2.35258 2.82201 3.16208 3.22538 3.24013 3.28175 3.53054 4.02638 4.18552 4.38954 4.79481 4.83415 4.88323 4.91133 4.96637 5.12059 5.18627 5.36492 5.49602 5.53115 5.57882 5.71738 5.79804 5.80239 5.98392 6.14536 6.21273 6.31104 6.35169 6.37506 6.45541 6.57323 6.59220 6.66397 6.70277 7.02184 7.09171 7.17795 7.62547 7.81320 7.84461 8.42971 8.53029 8.71958 9.21245 9.42399 10.67486 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.003180 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.841212 B = 8801.701789 C = 9484.869568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.525 6.525 4 N -0.667 5.667 5 C 0.128 3.872 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.096 4.096 9 C -0.102 4.102 10 C 0.571 3.429 11 O -0.556 6.556 12 N -0.625 5.625 13 C 0.113 3.887 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.539 4.539 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.076 3.924 25 C -0.061 4.061 26 C -0.119 4.119 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.411 0.589 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.274 0.726 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 1.138 7.528 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.401 6.401 4 N -0.312 5.312 5 C 0.034 3.966 6 C -0.129 4.129 7 C -0.133 4.133 8 C -0.115 4.115 9 C -0.105 4.105 10 C 0.361 3.639 11 O -0.438 6.438 12 N -0.357 5.357 13 C -0.009 4.009 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.577 4.577 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.046 4.046 25 C -0.064 4.064 26 C -0.175 4.175 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.532 0.945 7.526 18.189 hybrid contribution 1.036 0.425 0.038 1.120 sum -15.496 1.370 7.564 17.298 Atomic orbital electron populations 1.21932 0.90718 1.05993 1.04587 1.21009 0.90906 0.83123 0.75376 1.90714 1.70372 1.31377 1.47613 1.43565 1.05426 1.09993 1.72221 1.17433 0.82467 0.96503 1.00206 1.21462 0.94943 0.98408 0.98119 1.20992 0.93335 0.98443 1.00522 1.21589 1.00809 0.92350 0.96771 1.19637 0.92608 0.96051 1.02250 1.17813 0.80914 0.87514 0.77653 1.90660 1.70104 1.26390 1.56638 1.50124 1.07957 1.13939 1.63644 1.23472 0.84480 0.96085 0.96845 1.19840 0.91346 0.88488 0.80557 1.86062 1.75071 1.50574 1.26662 1.21453 0.91604 1.07058 1.37569 0.91091 1.25071 0.99512 0.94782 0.93663 1.69399 1.36701 1.10495 1.37034 0.86397 0.83873 0.77651 0.78645 1.21018 1.19910 1.19871 1.24433 0.88952 0.90262 1.00979 1.19612 0.92263 0.96309 0.98208 1.20935 1.00174 0.95338 1.01076 0.89017 0.88524 0.89071 0.75218 0.83727 0.85193 0.84758 0.91007 0.89456 0.75350 0.91603 0.89891 0.90961 0.90825 0.92855 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.32 36.01 0.37 -0.56 16 2 C 0.51 5.31 7.74 -10.99 -0.09 5.23 16 3 O -0.52 -7.73 14.25 5.55 0.08 -7.65 16 4 N -0.67 -6.95 4.99 -9.89 -0.05 -7.00 16 5 C 0.13 1.81 6.41 -83.74 -0.54 1.27 16 6 C -0.11 -1.59 8.71 -39.31 -0.34 -1.93 16 7 C -0.11 -1.65 10.02 -39.67 -0.40 -2.05 16 8 C -0.10 -1.56 8.83 -39.16 -0.35 -1.91 16 9 C -0.10 -1.83 5.81 -104.99 -0.61 -2.44 16 10 C 0.57 11.81 7.51 -12.32 -0.09 11.72 16 11 O -0.56 -12.34 14.66 5.32 0.08 -12.26 16 12 N -0.62 -13.20 3.58 -179.22 -0.64 -13.84 16 13 C 0.11 2.43 8.23 -2.96 -0.02 2.40 16 14 C 0.24 5.67 1.40 -90.84 -0.13 5.54 16 15 O -0.57 -14.68 13.48 -35.23 -0.48 -15.15 16 16 C -0.54 -13.28 8.61 -34.44 -0.30 -13.58 16 17 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 19 N -0.90 -22.52 11.20 55.43 0.62 -21.90 16 20 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C 0.08 1.62 5.71 -2.84 -0.02 1.60 16 25 C -0.06 -0.95 5.93 -104.02 -0.62 -1.57 16 26 C -0.12 -1.66 8.31 36.01 0.30 -1.36 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.41 2.99 7.50 -40.82 -0.31 2.68 16 31 H 0.15 2.09 5.78 -52.49 -0.30 1.78 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.16 5.59 -52.49 -0.29 1.87 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 36 H 0.39 10.15 6.60 45.56 0.30 10.45 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 38 H 0.08 1.66 7.71 -51.93 -0.40 1.26 16 39 H 0.07 1.58 7.88 -51.93 -0.41 1.17 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.59 7.23 -51.93 -0.38 0.21 16 42 H 0.10 1.66 5.68 -51.93 -0.30 1.36 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -30.75 348.89 -7.65 -38.40 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -4.58 Total: 15.84 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.92 Total: 4.05 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.07 Total: -42.74 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.32 Total: -35.06 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.75 -7.65 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331911419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.577 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds