Wall clock time and date at job start Tue Mar 31 2020 13:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99836 * 2 1 4 4 N 1.34770 * 120.00339 * 179.97438 * 2 1 3 5 5 C 1.39955 * 120.00345 * 185.75144 * 4 2 1 6 6 C 1.38991 * 119.99985 * 24.79294 * 5 4 2 7 7 C 1.38215 * 120.22414 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.22010 * 359.76619 * 7 6 5 9 9 C 1.39576 * 119.99636 * 0.53221 * 8 7 6 10 10 C 1.47858 * 120.11184 * 179.71829 * 9 8 7 11 11 O 1.21554 * 120.00211 * 154.58542 * 10 9 8 12 12 N 1.34778 * 119.99808 * 334.58742 * 10 9 8 13 13 C 1.47584 * 134.49222 * 174.78166 * 12 10 9 14 14 C 1.53949 * 86.11459 * 155.36169 * 13 12 10 15 15 O 1.42898 * 113.74025 * 269.15382 * 14 13 12 16 16 C 1.50702 * 113.73863 * 137.95493 * 14 13 12 17 17 H 1.08006 * 119.99687 * 1.92797 * 16 14 13 18 18 C 1.37876 * 120.00014 * 181.91868 * 16 14 13 19 19 N 1.31521 * 119.99723 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00090 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47020 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47184 * 300.00517 * 20 18 16 23 23 H 1.48501 * 109.47340 * 60.00586 * 20 18 16 24 24 C 1.47816 * 134.45840 * 354.65959 * 12 10 9 25 25 C 1.38592 * 120.00118 * 204.82376 * 5 4 2 26 26 C 1.50707 * 120.11120 * 359.97112 * 25 5 4 27 27 H 1.09002 * 109.46955 * 240.00815 * 1 2 3 28 28 H 1.09000 * 109.46901 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46699 * 120.00345 * 1 2 3 30 30 H 0.97000 * 119.99804 * 5.74514 * 4 2 1 31 31 H 1.07994 * 119.88742 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.88942 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.99959 * 180.28312 * 8 7 6 34 34 H 1.09001 * 113.76840 * 41.06226 * 13 12 10 35 35 H 1.08994 * 113.87272 * 269.67460 * 13 12 10 36 36 H 0.96698 * 114.00032 * 178.07414 * 15 14 13 37 37 H 0.96998 * 119.99746 * 179.97438 * 19 18 16 38 38 H 1.08995 * 113.77302 * 90.37484 * 24 12 10 39 39 H 1.09002 * 113.82802 * 318.90810 * 24 12 10 40 40 H 1.08995 * 109.47230 * 274.50596 * 26 25 5 41 41 H 1.09005 * 109.46734 * 34.50262 * 26 25 5 42 42 H 1.08999 * 109.46889 * 154.50614 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5752 -1.1701 0.1220 6 6 4.2213 -0.1053 0.7388 7 6 5.5980 -0.1037 0.8617 8 6 6.3400 -1.1618 0.3770 9 6 5.7011 -2.2330 -0.2496 10 6 6.4940 -3.3649 -0.7752 11 8 5.9842 -4.4623 -0.8908 12 7 7.7821 -3.1799 -1.1262 13 6 8.8687 -4.0699 -1.5793 14 6 9.4736 -2.8199 -2.2439 15 8 9.0464 -2.6220 -3.5931 16 6 10.9673 -2.7075 -2.0781 17 1 11.5128 -3.4819 -1.5593 18 6 11.6374 -1.6161 -2.5890 19 7 10.9729 -0.6730 -3.2205 20 14 13.4886 -1.4764 -2.3828 21 1 13.9637 -0.2198 -3.0159 22 1 13.8258 -1.4599 -0.9367 23 1 14.1481 -2.6380 -3.0316 24 6 8.6725 -2.0033 -1.2138 25 6 4.3117 -2.2345 -0.3733 26 6 3.6137 -3.3904 -1.0426 27 1 -0.3633 -0.5137 0.8901 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6996 -2.0051 -0.0832 31 1 3.6457 0.7233 1.1240 32 1 6.0945 0.7263 1.3423 33 1 7.4151 -1.1590 0.4791 34 1 8.5455 -4.8318 -2.2887 35 1 9.4752 -4.4735 -0.7687 36 1 9.4010 -1.8220 -4.0046 37 1 11.4443 0.0949 -3.5796 38 1 9.2204 -1.7974 -0.2944 39 1 8.1929 -1.1183 -1.6320 40 1 3.2948 -4.1088 -0.2875 41 1 2.7427 -3.0236 -1.5859 42 1 4.2986 -3.8747 -1.7386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331911419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:57 Heat of formation + Delta-G solvation = -72.725340 kcal Electronic energy + Delta-G solvation = -26641.573163 eV Core-core repulsion = 22780.240830 eV Total energy + Delta-G solvation = -3861.332333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97594 -41.17527 -39.74445 -38.62681 -36.12132 -35.75962 -34.14967 -33.51237 -32.26832 -30.68640 -29.45495 -27.98803 -27.06341 -27.02921 -24.77320 -22.68509 -22.21882 -21.35667 -20.16241 -19.40666 -18.76568 -18.11895 -17.56897 -17.14195 -16.95331 -16.72758 -16.44852 -16.19561 -15.94527 -15.57222 -15.17690 -14.96059 -14.63263 -14.44916 -14.30598 -14.06367 -13.75798 -13.49191 -13.40459 -13.26400 -13.21388 -13.01665 -12.90213 -12.80118 -12.74417 -12.36483 -12.25395 -12.20651 -11.63645 -11.35900 -11.01376 -10.81670 -10.62554 -10.24940 -9.93216 -9.50563 -9.13649 -8.25598 -6.43058 -0.17486 0.16256 1.46831 1.48665 1.50667 1.57873 1.80672 1.85451 2.09896 2.41310 2.75124 2.96766 3.36308 3.68998 3.72094 3.79200 3.95536 4.03093 4.14793 4.30153 4.37014 4.45617 4.54540 4.58902 4.62560 4.64446 4.66724 4.71600 4.76320 4.88818 4.95301 5.07909 5.13261 5.18154 5.22423 5.29151 5.38397 5.43896 5.72738 5.88294 5.92797 6.37662 6.62653 6.77267 7.04813 7.08806 7.30390 7.43028 8.80103 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.003180 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.841212 B = 8801.701789 C = 9484.869568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.572 6.572 4 N -0.658 5.658 5 C 0.133 3.867 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.105 4.105 9 C -0.128 4.128 10 C 0.566 3.434 11 O -0.577 6.577 12 N -0.628 5.628 13 C 0.114 3.886 14 C 0.219 3.781 15 O -0.587 6.587 16 C -0.555 4.555 17 H 0.074 0.926 18 C 0.033 3.967 19 N -0.916 5.916 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.267 1.267 23 H -0.275 1.275 24 C 0.094 3.906 25 C -0.069 4.069 26 C -0.113 4.113 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.428 0.572 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.387 0.613 37 H 0.275 0.725 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 1.616 8.638 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.451 6.451 4 N -0.304 5.304 5 C 0.038 3.962 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.358 3.642 11 O -0.460 6.460 12 N -0.361 5.361 13 C -0.008 4.008 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.593 4.593 17 H 0.092 0.908 18 C -0.168 4.168 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.210 1.210 22 H -0.191 1.191 23 H -0.200 1.200 24 C -0.028 4.028 25 C -0.073 4.073 26 C -0.169 4.169 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.268 0.732 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.010 1.389 8.644 20.026 hybrid contribution 1.383 0.281 -0.319 1.447 sum -16.627 1.670 8.326 18.670 Atomic orbital electron populations 1.21976 0.86239 1.06855 1.07024 1.22014 0.92856 0.82069 0.73589 1.90696 1.71683 1.32963 1.49718 1.43619 1.03873 1.11225 1.71661 1.17483 0.84315 0.95457 0.98960 1.21661 0.95115 0.98589 0.97904 1.21246 0.93444 0.98388 0.99804 1.21599 1.00833 0.92662 0.97369 1.19590 0.93507 0.95928 1.04131 1.18307 0.80638 0.88183 0.77099 1.90636 1.70336 1.27483 1.57579 1.50120 1.08285 1.13569 1.64088 1.23479 0.84879 0.95240 0.97152 1.20143 0.91674 0.90307 0.80108 1.86048 1.75309 1.50408 1.28091 1.21686 0.92242 1.07409 1.38008 0.90757 1.25757 1.03250 0.94447 0.93349 1.69476 1.37989 1.10773 1.37379 0.85445 0.79167 0.77284 0.78756 1.20972 1.19141 1.20012 1.24191 0.88391 0.89585 1.00633 1.19784 0.91674 0.97353 0.98462 1.20879 1.00245 0.94960 1.00806 0.86275 0.88526 0.86628 0.73239 0.83317 0.82746 0.85066 0.92025 0.87456 0.75909 0.91518 0.88568 0.91986 0.89478 0.89789 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.32 71.24 0.74 -0.40 16 2 C 0.50 9.30 7.74 87.66 0.68 9.98 16 3 O -0.57 -16.05 14.25 -3.07 -0.04 -16.09 16 4 N -0.66 -12.03 4.99 -303.60 -1.51 -13.54 16 5 C 0.13 3.56 6.41 38.11 0.24 3.81 16 6 C -0.11 -3.14 8.71 22.44 0.20 -2.94 16 7 C -0.11 -3.08 10.02 22.21 0.22 -2.86 16 8 C -0.11 -3.42 8.83 22.54 0.20 -3.22 16 9 C -0.13 -4.62 5.81 -20.10 -0.12 -4.74 16 10 C 0.57 23.88 7.51 86.79 0.65 24.53 16 11 O -0.58 -26.17 14.66 -3.88 -0.06 -26.23 16 12 N -0.63 -27.03 3.58 -843.02 -3.02 -30.05 16 13 C 0.11 4.99 8.23 86.49 0.71 5.70 16 14 C 0.22 10.51 1.40 -10.88 -0.02 10.50 16 15 O -0.59 -30.96 13.48 -148.98 -2.01 -32.97 16 16 C -0.56 -27.42 8.61 25.60 0.22 -27.20 16 17 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 18 C 0.03 1.60 5.39 84.65 0.46 2.06 16 19 N -0.92 -46.26 11.20 21.45 0.24 -46.02 16 20 Si 0.97 39.14 29.54 68.60 2.03 41.17 16 21 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.09 4.07 5.71 86.44 0.49 4.56 16 25 C -0.07 -2.13 5.93 -19.47 -0.12 -2.25 16 26 C -0.11 -3.04 8.31 71.24 0.59 -2.45 16 27 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.10 0.76 8.12 -2.39 -0.02 0.74 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.43 4.80 7.50 -92.71 -0.70 4.10 16 31 H 0.15 4.10 5.78 -2.91 -0.02 4.09 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.13 4.24 5.59 -2.91 -0.02 4.23 16 34 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.11 4.18 8.09 -2.39 -0.02 4.16 16 36 H 0.39 20.67 6.60 -74.06 -0.49 20.18 16 37 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 38 H 0.10 3.84 7.71 -2.39 -0.02 3.82 16 39 H 0.06 2.77 7.88 -2.39 -0.02 2.75 16 40 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 1.67 7.23 -2.38 -0.02 1.66 16 42 H 0.06 2.15 5.68 -2.39 -0.01 2.13 16 Total: -1.00 -67.52 348.89 0.68 -66.84 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -0.10 Total: 41.83 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.15 Total: 15.08 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -4.29 Total: -89.61 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: -2.11 Total: -75.30 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -67.52 0.68 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331911419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.888 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds