Wall clock time and date at job start Tue Mar 31 2020 12:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00429 * 2 1 4 4 N 1.34777 * 119.99834 * 180.02562 * 2 1 3 5 5 C 1.39964 * 119.99789 * 175.21933 * 4 2 1 6 6 C 1.38991 * 119.99679 * 35.39227 * 5 4 2 7 7 C 1.38210 * 120.21901 * 179.97438 * 6 5 4 8 8 C 1.38027 * 120.22231 * 359.76463 * 7 6 5 9 9 C 1.50708 * 120.00073 * 180.27254 * 8 7 6 10 10 C 1.39575 * 119.99402 * 0.48673 * 8 7 6 11 11 C 1.47860 * 120.10721 * 179.76354 * 10 8 7 12 12 O 1.21550 * 120.00446 * 323.27319 * 11 10 8 13 13 N 1.34778 * 120.00040 * 143.27647 * 11 10 8 14 14 C 1.47068 * 136.05649 * 355.04375 * 13 11 10 15 15 C 1.53752 * 87.88881 * 152.96085 * 14 13 11 16 16 O 1.42904 * 114.39372 * 272.67018 * 15 14 13 17 17 C 1.50697 * 114.26380 * 139.79378 * 15 14 13 18 18 H 1.08006 * 119.99626 * 266.46903 * 17 15 14 19 19 C 1.37877 * 120.00701 * 86.47404 * 17 15 14 20 20 N 1.31513 * 120.00263 * 179.97438 * 19 17 15 21 21 Si 1.86805 * 119.99590 * 359.97438 * 19 17 15 22 22 H 1.48501 * 109.46877 * 89.99891 * 21 19 17 23 23 H 1.48495 * 109.46980 * 209.99835 * 21 19 17 24 24 H 1.48502 * 109.47063 * 330.00080 * 21 19 17 25 25 C 1.47069 * 136.06108 * 175.40760 * 13 11 10 26 26 C 1.38593 * 119.99593 * 215.36585 * 5 4 2 27 27 H 1.09002 * 109.46913 * 269.99521 * 1 2 3 28 28 H 1.08999 * 109.47273 * 29.99876 * 1 2 3 29 29 H 1.09003 * 109.47150 * 149.99990 * 1 2 3 30 30 H 0.97003 * 120.00329 * 355.21910 * 4 2 1 31 31 H 1.07991 * 119.89098 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.88957 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47412 * 272.77722 * 9 8 7 34 34 H 1.09005 * 109.46562 * 32.77856 * 9 8 7 35 35 H 1.09001 * 109.46503 * 152.77302 * 9 8 7 36 36 H 1.09005 * 113.46562 * 267.69276 * 14 13 11 37 37 H 1.09003 * 113.46940 * 38.12912 * 14 13 11 38 38 H 0.96695 * 113.99957 * 273.58722 * 16 15 14 39 39 H 0.96998 * 119.99374 * 180.02562 * 20 19 17 40 40 H 1.08998 * 113.46759 * 321.86970 * 25 13 11 41 41 H 1.08996 * 113.46651 * 92.24902 * 25 13 11 42 42 H 1.08002 * 120.11627 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5768 -1.1693 -0.1015 6 6 4.3188 -0.1611 0.5026 7 6 5.6975 -0.1589 0.4062 8 6 6.3471 -1.1605 -0.2865 9 6 7.8511 -1.1566 -0.3833 10 6 5.6108 -2.1745 -0.9012 11 6 6.3038 -3.2458 -1.6483 12 8 7.2975 -2.9881 -2.2991 13 7 5.8336 -4.5083 -1.6079 14 6 4.7595 -5.2159 -0.8948 15 6 4.7073 -6.2045 -2.0712 16 8 3.8472 -5.8050 -3.1402 17 6 4.5216 -7.6433 -1.6633 18 1 5.3824 -8.2806 -1.5245 19 6 3.2528 -8.1461 -1.4673 20 7 3.0908 -9.4019 -1.1117 21 14 1.7640 -7.0436 -1.7067 22 1 1.3095 -7.1253 -3.1181 23 1 0.6691 -7.4882 -0.8075 24 1 2.1300 -5.6408 -1.3850 25 6 6.1729 -5.7859 -2.2525 26 6 4.2193 -2.1769 -0.8035 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6984 -2.0059 0.0691 31 1 3.8163 0.6231 1.0491 32 1 6.2688 0.6268 0.8781 33 1 8.1585 -0.5561 -1.2393 34 1 8.2726 -0.7327 0.5282 35 1 8.2096 -2.1783 -0.5085 36 1 5.0859 -5.6710 0.0404 37 1 3.8507 -4.6248 -0.7819 38 1 2.9248 -6.0702 -3.0228 39 1 2.1981 -9.7556 -0.9742 40 1 6.4682 -5.6804 -3.2964 41 1 6.8726 -6.3907 -1.6758 42 1 3.6445 -2.9616 -1.2730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331930484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:52 Heat of formation + Delta-G solvation = -33.779499 kcal Electronic energy + Delta-G solvation = -26980.318628 eV Core-core repulsion = 23120.675114 eV Total energy + Delta-G solvation = -3859.643515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82202 -40.01381 -38.74413 -37.37598 -35.14850 -34.66191 -32.64360 -31.98797 -31.49917 -29.85581 -28.87729 -26.43314 -25.57097 -25.36684 -23.54283 -21.81607 -21.26312 -20.15265 -18.95738 -17.87698 -17.49596 -17.17456 -16.47108 -16.30856 -15.73024 -15.61543 -15.23983 -15.14508 -14.41389 -14.18213 -13.89981 -13.79430 -13.64501 -13.48572 -13.03279 -12.97018 -12.78982 -12.72228 -12.43779 -12.35481 -12.13223 -12.00091 -11.69796 -11.50122 -11.17762 -10.95170 -10.66780 -10.36662 -10.21533 -10.17082 -9.75742 -9.34281 -9.12051 -8.98070 -8.73454 -8.20550 -8.04233 -6.51149 -4.57138 1.00458 1.19231 2.29516 2.83725 2.86965 2.89581 3.03840 3.06601 3.31474 3.82615 3.92324 4.42041 4.51413 4.71445 4.79367 4.87267 4.96868 4.97276 5.02138 5.15912 5.27928 5.35766 5.46048 5.52184 5.71124 5.75061 5.81772 5.96346 5.99198 6.04136 6.15830 6.17567 6.28957 6.31177 6.32327 6.38726 6.51949 6.60609 6.89717 7.09355 7.13638 7.83717 7.91709 8.21312 8.40130 8.53051 8.53943 9.05779 10.61095 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.005078 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.569716 B = 5513.192043 C = 7583.665781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.531 6.531 4 N -0.673 5.673 5 C 0.124 3.876 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.046 4.046 9 C -0.113 4.113 10 C -0.102 4.102 11 C 0.582 3.418 12 O -0.546 6.546 13 N -0.631 5.631 14 C 0.060 3.940 15 C 0.195 3.805 16 O -0.549 6.549 17 C -0.533 4.533 18 H 0.094 0.906 19 C 0.080 3.920 20 N -0.873 5.873 21 Si 0.861 3.139 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.260 1.260 25 C 0.123 3.877 26 C -0.106 4.106 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.413 0.587 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.351 0.649 39 H 0.272 0.728 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 14.591 5.710 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.407 6.407 4 N -0.318 5.318 5 C 0.031 3.969 6 C -0.117 4.117 7 C -0.132 4.132 8 C -0.047 4.047 9 C -0.169 4.169 10 C -0.105 4.105 11 C 0.372 3.628 12 O -0.426 6.426 13 N -0.364 5.364 14 C -0.064 4.064 15 C 0.154 3.846 16 O -0.360 6.360 17 C -0.571 4.571 18 H 0.112 0.888 19 C -0.126 4.126 20 N -0.509 5.509 21 Si 0.690 3.310 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.186 1.186 25 C 0.001 3.999 26 C -0.126 4.126 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.203 0.797 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.720 15.782 5.167 16.827 hybrid contribution -1.850 -0.276 0.206 1.882 sum -4.570 15.505 5.373 17.034 Atomic orbital electron populations 1.21900 0.90638 1.05463 1.05152 1.21015 0.90922 0.83067 0.75027 1.90719 1.70464 1.31299 1.48169 1.43623 1.05212 1.10116 1.72894 1.17566 0.82591 0.97584 0.99149 1.21351 0.93625 0.98407 0.98329 1.20866 0.93775 0.98348 1.00230 1.19959 0.96677 0.92741 0.95336 1.20856 0.90194 1.04150 1.01719 1.19580 0.92881 0.96702 1.01357 1.17641 0.83105 0.80841 0.81172 1.90731 1.25708 1.82147 1.43969 1.49601 1.35361 1.06405 1.45057 1.24638 0.89090 0.92822 0.99819 1.20303 0.88072 0.92556 0.83657 1.86488 1.21214 1.81589 1.46756 1.21143 0.95226 0.92960 1.47763 0.88844 1.25009 0.98778 0.94960 0.93805 1.69846 1.23490 1.13214 1.44324 0.87302 0.83599 0.81142 0.78992 1.19247 1.20946 1.18577 1.23167 0.97690 0.80600 0.98442 1.21247 0.93997 0.99329 0.98070 0.88435 0.88419 0.89707 0.75083 0.84197 0.85114 0.90522 0.91989 0.90491 0.88611 0.91787 0.79674 0.91795 0.90819 0.88626 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.31 36.01 0.37 -0.70 16 2 C 0.51 5.56 7.78 -10.99 -0.09 5.48 16 3 O -0.53 -7.79 14.54 5.55 0.08 -7.71 16 4 N -0.67 -7.34 5.33 -9.89 -0.05 -7.39 16 5 C 0.12 1.72 6.29 -83.73 -0.53 1.20 16 6 C -0.10 -1.33 8.69 -39.31 -0.34 -1.67 16 7 C -0.11 -1.48 9.69 -39.67 -0.38 -1.87 16 8 C -0.05 -0.68 5.91 -104.20 -0.62 -1.30 16 9 C -0.11 -1.54 8.95 36.01 0.32 -1.22 16 10 C -0.10 -1.72 5.73 -104.99 -0.60 -2.33 16 11 C 0.58 11.44 7.12 -12.32 -0.09 11.35 16 12 O -0.55 -11.85 15.50 5.32 0.08 -11.76 16 13 N -0.63 -12.40 3.63 -186.18 -0.68 -13.07 16 14 C 0.06 1.13 6.71 -8.38 -0.06 1.08 16 15 C 0.20 4.24 1.10 -91.13 -0.10 4.14 16 16 O -0.55 -12.34 13.33 -35.23 -0.47 -12.81 16 17 C -0.53 -13.16 9.28 -34.44 -0.32 -13.47 16 18 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 19 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.87 -23.49 13.96 55.43 0.77 -22.72 16 21 Si 0.86 17.71 24.42 -169.99 -4.15 13.56 16 22 H -0.27 -5.40 7.06 56.52 0.40 -5.00 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.26 -4.84 5.50 56.52 0.31 -4.53 16 25 C 0.12 2.48 8.02 -8.51 -0.07 2.41 16 26 C -0.11 -1.64 8.69 -38.98 -0.34 -1.98 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.41 3.40 8.82 -40.82 -0.36 3.04 16 31 H 0.14 1.89 6.23 -52.49 -0.33 1.56 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.08 1.20 6.20 -51.93 -0.32 0.88 16 36 H 0.10 1.75 8.10 -51.93 -0.42 1.33 16 37 H 0.06 1.14 4.72 -51.93 -0.25 0.89 16 38 H 0.35 7.46 3.16 45.56 0.14 7.60 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 42 H 0.14 2.13 5.92 -52.49 -0.31 1.82 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -31.57 344.59 -7.02 -38.59 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -4.87 Total: 15.09 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.93 Total: 3.04 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.04 Total: -43.18 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.31 Total: -32.28 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.15 Total: 13.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.57 -7.02 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331930484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.806 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds