Wall clock time and date at job start Tue Mar 31 2020 12:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00429 * 2 1 4 4 N 1.34777 * 119.99834 * 180.02562 * 2 1 3 5 5 C 1.39964 * 119.99789 * 175.21933 * 4 2 1 6 6 C 1.38991 * 119.99679 * 35.39227 * 5 4 2 7 7 C 1.38210 * 120.21901 * 179.97438 * 6 5 4 8 8 C 1.38027 * 120.22231 * 359.76463 * 7 6 5 9 9 C 1.50708 * 120.00073 * 180.27254 * 8 7 6 10 10 C 1.39575 * 119.99402 * 0.48673 * 8 7 6 11 11 C 1.47860 * 120.10721 * 179.76354 * 10 8 7 12 12 O 1.21550 * 120.00446 * 323.27319 * 11 10 8 13 13 N 1.34778 * 120.00040 * 143.27647 * 11 10 8 14 14 C 1.47068 * 136.05649 * 355.04375 * 13 11 10 15 15 C 1.53752 * 87.88881 * 152.96085 * 14 13 11 16 16 O 1.42904 * 114.39372 * 272.67018 * 15 14 13 17 17 C 1.50697 * 114.26380 * 139.79378 * 15 14 13 18 18 H 1.08006 * 119.99626 * 266.46903 * 17 15 14 19 19 C 1.37877 * 120.00701 * 86.47404 * 17 15 14 20 20 N 1.31513 * 120.00263 * 179.97438 * 19 17 15 21 21 Si 1.86805 * 119.99590 * 359.97438 * 19 17 15 22 22 H 1.48501 * 109.46877 * 89.99891 * 21 19 17 23 23 H 1.48495 * 109.46980 * 209.99835 * 21 19 17 24 24 H 1.48502 * 109.47063 * 330.00080 * 21 19 17 25 25 C 1.47069 * 136.06108 * 175.40760 * 13 11 10 26 26 C 1.38593 * 119.99593 * 215.36585 * 5 4 2 27 27 H 1.09002 * 109.46913 * 269.99521 * 1 2 3 28 28 H 1.08999 * 109.47273 * 29.99876 * 1 2 3 29 29 H 1.09003 * 109.47150 * 149.99990 * 1 2 3 30 30 H 0.97003 * 120.00329 * 355.21910 * 4 2 1 31 31 H 1.07991 * 119.89098 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.88957 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47412 * 272.77722 * 9 8 7 34 34 H 1.09005 * 109.46562 * 32.77856 * 9 8 7 35 35 H 1.09001 * 109.46503 * 152.77302 * 9 8 7 36 36 H 1.09005 * 113.46562 * 267.69276 * 14 13 11 37 37 H 1.09003 * 113.46940 * 38.12912 * 14 13 11 38 38 H 0.96695 * 113.99957 * 273.58722 * 16 15 14 39 39 H 0.96998 * 119.99374 * 180.02562 * 20 19 17 40 40 H 1.08998 * 113.46759 * 321.86970 * 25 13 11 41 41 H 1.08996 * 113.46651 * 92.24902 * 25 13 11 42 42 H 1.08002 * 120.11627 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5768 -1.1693 -0.1015 6 6 4.3188 -0.1611 0.5026 7 6 5.6975 -0.1589 0.4062 8 6 6.3471 -1.1605 -0.2865 9 6 7.8511 -1.1566 -0.3833 10 6 5.6108 -2.1745 -0.9012 11 6 6.3038 -3.2458 -1.6483 12 8 7.2975 -2.9881 -2.2991 13 7 5.8336 -4.5083 -1.6079 14 6 4.7595 -5.2159 -0.8948 15 6 4.7073 -6.2045 -2.0712 16 8 3.8472 -5.8050 -3.1402 17 6 4.5216 -7.6433 -1.6633 18 1 5.3824 -8.2806 -1.5245 19 6 3.2528 -8.1461 -1.4673 20 7 3.0908 -9.4019 -1.1117 21 14 1.7640 -7.0436 -1.7067 22 1 1.3095 -7.1253 -3.1181 23 1 0.6691 -7.4882 -0.8075 24 1 2.1300 -5.6408 -1.3850 25 6 6.1729 -5.7859 -2.2525 26 6 4.2193 -2.1769 -0.8035 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6984 -2.0059 0.0691 31 1 3.8163 0.6231 1.0491 32 1 6.2688 0.6268 0.8781 33 1 8.1585 -0.5561 -1.2393 34 1 8.2726 -0.7327 0.5282 35 1 8.2096 -2.1783 -0.5085 36 1 5.0859 -5.6710 0.0404 37 1 3.8507 -4.6248 -0.7819 38 1 2.9248 -6.0702 -3.0228 39 1 2.1981 -9.7556 -0.9742 40 1 6.4682 -5.6804 -3.2964 41 1 6.8726 -6.3907 -1.6758 42 1 3.6445 -2.9616 -1.2730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331930484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:50 Heat of formation + Delta-G solvation = -57.634490 kcal Electronic energy + Delta-G solvation = -26981.353058 eV Core-core repulsion = 23120.675114 eV Total energy + Delta-G solvation = -3860.677945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.99880 -41.31224 -40.03493 -38.78540 -36.44040 -36.07855 -34.55591 -32.97136 -32.70957 -30.63608 -30.38547 -27.80105 -27.06919 -26.89141 -24.75834 -22.85928 -22.50210 -21.53674 -20.32830 -19.48490 -18.76946 -18.36205 -18.16495 -17.57263 -16.87555 -16.77274 -16.47684 -16.43172 -15.68314 -15.56741 -15.27645 -15.12453 -14.98073 -14.66894 -14.53200 -14.40546 -13.99506 -13.85554 -13.49552 -13.41056 -13.20943 -13.05649 -12.92377 -12.74332 -12.70022 -12.45719 -12.31063 -11.91618 -11.56428 -11.31991 -11.10436 -11.03994 -10.80637 -10.46787 -10.11113 -9.70802 -9.16412 -8.42230 -6.55349 -0.17598 0.12593 1.23437 1.28421 1.41563 1.43044 1.65562 1.85259 2.03179 2.18086 2.66462 2.74704 3.15593 3.40406 3.65159 3.76180 3.82265 3.88976 4.02802 4.21022 4.32020 4.34547 4.41671 4.51741 4.56351 4.60291 4.64309 4.68014 4.71915 4.76832 4.86390 4.89523 4.98534 5.08306 5.10649 5.24537 5.25487 5.34550 5.47800 5.84822 6.02200 6.34959 6.52901 6.63507 6.69386 6.99315 7.04041 7.12754 8.73120 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.005078 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.569716 B = 5513.192043 C = 7583.665781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.573 6.573 4 N -0.666 5.666 5 C 0.126 3.874 6 C -0.099 4.099 7 C -0.103 4.103 8 C -0.055 4.055 9 C -0.109 4.109 10 C -0.124 4.124 11 C 0.580 3.420 12 O -0.574 6.574 13 N -0.632 5.632 14 C 0.074 3.926 15 C 0.188 3.812 16 O -0.556 6.556 17 C -0.542 4.542 18 H 0.058 0.942 19 C 0.027 3.973 20 N -0.922 5.922 21 Si 0.919 3.081 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.226 1.226 25 C 0.119 3.881 26 C -0.112 4.112 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.427 0.573 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.356 0.644 39 H 0.274 0.726 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 17.124 6.759 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.452 6.452 4 N -0.313 5.313 5 C 0.032 3.968 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.056 4.056 9 C -0.165 4.165 10 C -0.128 4.128 11 C 0.372 3.628 12 O -0.456 6.456 13 N -0.365 5.365 14 C -0.049 4.049 15 C 0.147 3.853 16 O -0.368 6.368 17 C -0.580 4.580 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.559 5.559 21 Si 0.744 3.256 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.150 1.150 25 C -0.003 4.003 26 C -0.133 4.133 27 H 0.137 0.863 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.266 0.734 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.209 0.791 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.811 18.304 6.222 19.922 hybrid contribution -1.132 -1.091 -0.126 1.577 sum -5.943 17.213 6.096 19.204 Atomic orbital electron populations 1.21949 0.86702 1.06691 1.06894 1.21903 0.92671 0.82143 0.73479 1.90699 1.71649 1.32714 1.50115 1.43691 1.04080 1.11151 1.72404 1.17648 0.84133 0.96841 0.98199 1.21546 0.93995 0.98282 0.98071 1.21161 0.93799 0.98144 0.99029 1.20153 0.97206 0.92767 0.95500 1.20826 0.89706 1.02765 1.03213 1.19503 0.93685 0.96808 1.02776 1.18141 0.82824 0.81061 0.80813 1.90705 1.27106 1.82534 1.45253 1.49585 1.35514 1.06334 1.45036 1.24445 0.89847 0.91943 0.98678 1.20256 0.88810 0.91554 0.84683 1.86486 1.21705 1.81413 1.47239 1.21225 0.94501 0.94358 1.47935 0.92410 1.25862 1.02123 0.96350 0.93123 1.69995 1.24479 1.15493 1.45948 0.86316 0.79198 0.80800 0.79329 1.18489 1.20410 1.15009 1.23167 0.97219 0.81486 0.98457 1.21159 0.93351 1.00012 0.98743 0.86272 0.88198 0.87451 0.73423 0.83795 0.82038 0.90742 0.88851 0.93018 0.87875 0.89757 0.79096 0.91621 0.91541 0.87807 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.31 71.24 0.73 -0.67 16 2 C 0.51 9.56 7.78 87.66 0.68 10.24 16 3 O -0.57 -15.65 14.54 -3.04 -0.04 -15.69 16 4 N -0.67 -12.47 5.33 -303.60 -1.62 -14.09 16 5 C 0.13 3.18 6.29 38.11 0.24 3.42 16 6 C -0.10 -2.45 8.69 22.44 0.20 -2.25 16 7 C -0.10 -2.41 9.69 22.21 0.22 -2.20 16 8 C -0.05 -1.54 5.91 -19.59 -0.12 -1.66 16 9 C -0.11 -2.83 8.95 71.24 0.64 -2.19 16 10 C -0.12 -4.07 5.73 -20.10 -0.12 -4.19 16 11 C 0.58 22.64 7.12 86.79 0.62 23.25 16 12 O -0.57 -25.22 15.50 -3.87 -0.06 -25.28 16 13 N -0.63 -24.52 3.63 -861.70 -3.13 -27.65 16 14 C 0.07 2.70 6.71 83.26 0.56 3.26 16 15 C 0.19 8.08 1.10 -11.12 -0.01 8.07 16 16 O -0.56 -24.19 13.33 -148.98 -1.99 -26.18 16 17 C -0.54 -27.29 9.28 25.60 0.24 -27.05 16 18 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 19 C 0.03 1.35 5.47 84.65 0.46 1.81 16 20 N -0.92 -50.69 13.96 21.45 0.30 -50.39 16 21 Si 0.92 35.11 24.42 68.60 1.68 36.78 16 22 H -0.26 -9.61 7.06 99.48 0.70 -8.91 16 23 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.23 -7.33 5.50 99.48 0.55 -6.79 16 25 C 0.12 4.86 8.02 83.17 0.67 5.53 16 26 C -0.11 -3.24 8.69 22.66 0.20 -3.04 16 27 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.43 5.41 8.82 -92.71 -0.82 4.60 16 31 H 0.14 3.52 6.23 -2.92 -0.02 3.50 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.05 1.61 6.20 -2.39 -0.01 1.59 16 36 H 0.10 3.64 8.10 -2.38 -0.02 3.62 16 37 H 0.08 2.75 4.72 -2.39 -0.01 2.74 16 38 H 0.36 14.25 3.16 -74.06 -0.23 14.02 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 42 H 0.13 3.84 5.92 -2.91 -0.02 3.82 16 Total: -1.00 -70.50 344.59 0.20 -70.30 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.13 Total: 39.87 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.20 Total: 12.33 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.45 Total: -92.13 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -2.09 Total: -67.15 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 1.68 Total: 36.78 kcal Total: -70.50 0.20 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331930484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.662 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds