Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.49700 * 2 1 4 4 C 1.53445 * 109.48092 * 120.03287 * 2 1 3 5 5 C 1.51488 * 107.38937 * 55.90620 * 4 2 1 6 6 O 1.21285 * 121.16831 * 222.42942 * 5 4 2 7 7 C 1.47424 * 117.55295 * 42.39074 * 5 4 2 8 8 C 1.39977 * 119.71480 * 168.93899 * 7 5 4 9 9 C 1.39508 * 118.14469 * 179.53516 * 8 7 5 10 10 C 1.47567 * 120.68217 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99919 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00124 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47165 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99756 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00392 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99762 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47130 * 60.00292 * 18 16 14 20 20 H 1.48501 * 109.46996 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47351 * 300.00122 * 18 16 14 22 22 C 1.40598 * 118.63449 * 359.95493 * 9 8 7 23 23 O 1.35230 * 119.49977 * 180.18457 * 22 9 8 24 24 N 1.32169 * 120.99582 * 0.16272 * 22 9 8 25 25 C 1.32158 * 122.36899 * 359.95599 * 24 22 9 26 26 C 1.50594 * 118.75053 * 179.76452 * 25 24 22 27 27 H 1.08998 * 109.47063 * 299.97017 * 1 2 3 28 28 H 1.09000 * 109.46719 * 59.96741 * 1 2 3 29 29 H 1.09001 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47080 * 300.03241 * 3 2 1 32 32 H 1.09000 * 109.46914 * 60.03051 * 3 2 1 33 33 H 1.09002 * 109.88604 * 175.40153 * 4 2 1 34 34 H 1.09000 * 109.88182 * 296.41599 * 4 2 1 35 35 H 1.08005 * 120.92587 * 359.51150 * 8 7 5 36 36 H 0.97002 * 119.99948 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47166 * 299.99787 * 13 12 10 38 38 H 1.08997 * 109.47369 * 60.00604 * 13 12 10 39 39 H 0.96995 * 120.00441 * 180.02562 * 17 16 14 40 40 H 0.96697 * 113.99674 * 90.00165 * 23 22 9 41 41 H 1.09008 * 109.11810 * 36.73548 * 26 25 24 42 42 H 1.09000 * 109.12228 * 277.65286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0417 -0.7240 1.2524 5 6 1.4288 -2.1093 1.2567 6 8 0.9929 -2.5997 2.2768 7 6 1.3811 -2.8379 -0.0240 8 6 1.0436 -4.1964 -0.0374 9 6 0.9988 -4.8512 -1.2684 10 6 0.6500 -6.2829 -1.3474 11 8 0.6141 -6.8412 -2.4269 12 7 0.3711 -6.9716 -0.2230 13 6 0.0253 -8.3931 -0.3014 14 6 -0.2398 -8.9228 1.0843 15 1 -0.1592 -8.2661 1.9380 16 6 -0.5862 -10.2454 1.2622 17 7 -0.6849 -11.0448 0.2227 18 14 -0.9141 -10.9021 2.9799 19 1 -2.0404 -10.1510 3.5904 20 1 -1.2647 -12.3429 2.9005 21 1 0.3027 -10.7346 3.8146 22 6 1.2924 -4.1190 -2.4322 23 8 1.2505 -4.7355 -3.6350 24 7 1.6083 -2.8372 -2.3683 25 6 1.6650 -2.1787 -1.2239 26 6 2.0390 -0.7201 -1.2453 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1306 1.4418 -0.0005 31 1 1.6771 1.9564 -0.8897 32 1 1.6780 1.9560 0.8903 33 1 3.1286 -0.7996 1.2189 34 1 1.7355 -0.1803 2.1460 35 1 0.8244 -4.7229 0.8798 36 1 0.3993 -6.5261 0.6382 37 1 -0.8677 -8.5165 -0.9141 38 1 0.8523 -8.9440 -0.7492 39 1 -0.9289 -11.9752 0.3478 40 1 0.3852 -4.7002 -4.0651 41 1 1.6055 -0.2533 -2.1299 42 1 3.1243 -0.6304 -1.2911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332682292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = -92.290647 kcal Electronic energy + Delta-G solvation = -26462.742269 eV Core-core repulsion = 22600.561520 eV Total energy + Delta-G solvation = -3862.180748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51332 -39.75652 -38.41661 -37.74617 -36.77353 -34.28302 -33.19680 -32.18700 -31.36132 -29.28187 -28.13385 -27.73245 -26.93442 -24.05924 -23.57097 -22.64916 -21.18892 -20.15618 -19.20947 -18.54042 -17.59181 -17.24154 -16.38886 -16.14347 -15.64904 -15.31873 -15.20088 -14.97570 -14.79935 -14.64822 -14.37626 -14.23944 -13.80612 -13.59946 -13.12157 -12.87273 -12.71944 -12.57391 -12.42260 -12.07750 -11.98591 -11.85415 -11.77984 -11.66059 -11.24339 -11.16414 -11.02557 -10.89271 -10.38128 -10.23849 -10.10244 -9.72726 -9.45429 -9.17063 -9.01093 -8.77043 -7.97168 -6.19190 -4.26655 0.13256 0.67909 1.99225 3.01067 3.23617 3.25211 3.29863 3.31620 3.65081 3.77168 3.89921 4.03768 4.09603 4.25460 4.33099 4.42393 4.52271 4.72258 4.84453 4.91988 5.02968 5.08629 5.16992 5.17138 5.26383 5.30287 5.35369 5.40881 5.43732 5.54432 5.64054 5.71542 5.74912 5.81349 5.86648 6.09720 7.17724 7.22048 7.28565 7.40033 7.45461 7.60039 7.62107 7.92040 8.49189 8.70318 8.94378 9.39773 10.90887 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.003285 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.677607 B = 8520.936726 C = 9930.862817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.409 3.591 6 O -0.445 6.445 7 C -0.245 4.245 8 C 0.024 3.976 9 C -0.205 4.205 10 C 0.544 3.456 11 O -0.531 6.531 12 N -0.704 5.704 13 C 0.251 3.749 14 C -0.547 4.547 15 H 0.063 0.937 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.402 3.598 23 O -0.455 6.455 24 N -0.519 5.519 25 C 0.224 3.776 26 C -0.069 4.069 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.389 0.611 37 H 0.030 0.970 38 H 0.031 0.969 39 H 0.267 0.733 40 H 0.410 0.590 41 H 0.099 0.901 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.772 26.517 -0.856 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.193 4.193 5 C 0.286 3.714 6 O -0.320 6.320 7 C -0.248 4.248 8 C -0.001 4.001 9 C -0.212 4.212 10 C 0.328 3.672 11 O -0.410 6.410 12 N -0.352 5.352 13 C 0.131 3.869 14 C -0.585 4.585 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.222 3.778 23 O -0.263 6.263 24 N -0.239 5.239 25 C 0.085 3.915 26 C -0.106 4.106 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.173 0.827 36 H 0.223 0.777 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.271 0.729 41 H 0.117 0.883 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.189 25.827 -1.861 26.408 hybrid contribution -0.767 -0.780 1.781 2.090 sum 4.422 25.047 -0.080 25.434 Atomic orbital electron populations 1.22044 0.93674 1.02503 1.02814 1.20527 0.96504 0.95922 0.92832 1.21838 1.01393 0.93745 1.02699 1.22464 1.02648 0.94079 1.00065 1.22424 0.74781 0.87943 0.86291 1.90593 1.37025 1.69581 1.34755 1.21127 1.11466 0.95636 0.96594 1.22061 0.87398 0.92690 0.97974 1.21507 1.08122 0.97687 0.93919 1.17715 0.79245 0.84671 0.85565 1.90785 1.52722 1.69713 1.27754 1.46457 1.67341 1.14019 1.07398 1.19177 0.96511 0.73514 0.97733 1.21175 1.49489 0.95724 0.92105 0.91877 1.24933 0.94819 0.96530 0.97581 1.69954 1.46488 1.06045 1.29718 0.86462 0.78882 0.77905 0.83622 1.19990 1.21022 1.19996 1.19308 0.87151 0.85471 0.85919 1.84639 1.37779 1.74081 1.29829 1.67109 1.17863 1.09114 1.29845 1.21368 0.88353 0.95650 0.86136 1.20604 1.02697 0.87951 0.99372 0.91765 0.91597 0.92508 0.91957 0.91792 0.91828 0.87596 0.88191 0.82746 0.77703 0.95173 0.95146 0.92313 0.72915 0.88272 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.99 37.16 0.30 -0.74 16 2 C -0.06 -0.33 0.77 -154.49 -0.12 -0.45 16 3 C -0.14 -0.52 8.48 37.15 0.31 -0.21 16 4 C -0.16 -1.07 5.07 -27.27 -0.14 -1.20 16 5 C 0.41 4.50 5.70 -30.18 -0.17 4.33 16 6 O -0.45 -6.33 17.30 5.55 0.10 -6.23 16 7 C -0.24 -2.95 5.04 -104.91 -0.53 -3.48 16 8 C 0.02 0.35 9.17 -38.46 -0.35 -0.01 16 9 C -0.21 -3.36 5.90 -104.73 -0.62 -3.98 16 10 C 0.54 11.19 7.77 -12.46 -0.10 11.09 16 11 O -0.53 -12.58 15.19 -16.50 -0.25 -12.83 16 12 N -0.70 -15.10 5.50 -62.52 -0.34 -15.44 16 13 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 14 C -0.55 -14.89 9.28 -34.44 -0.32 -15.21 16 15 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 16 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.40 6.15 7.76 -16.52 -0.13 6.02 16 23 O -0.46 -6.99 11.64 -39.17 -0.46 -7.45 16 24 N -0.52 -6.92 10.23 -8.82 -0.09 -7.01 16 25 C 0.22 2.47 6.16 -81.91 -0.50 1.96 16 26 C -0.07 -0.48 4.64 -28.15 -0.13 -0.61 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 6.02 -51.93 -0.31 0.19 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.16 2.12 6.23 -52.48 -0.33 1.80 16 36 H 0.39 7.31 6.43 -40.82 -0.26 7.05 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.41 4.53 9.06 45.56 0.41 4.94 16 41 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -34.55 351.82 -7.32 -41.87 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.67 Total: 5.26 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.62 Total: 5.85 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.30 Total: -47.72 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.61 Total: -26.51 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.55 -7.32 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332682292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.420 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds