Wall clock time and date at job start Tue Mar 31 2020 12:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.49700 * 2 1 4 4 C 1.53445 * 109.48092 * 120.03287 * 2 1 3 5 5 C 1.51488 * 107.38937 * 55.90620 * 4 2 1 6 6 O 1.21285 * 121.16831 * 222.42942 * 5 4 2 7 7 C 1.47424 * 117.55295 * 42.39074 * 5 4 2 8 8 C 1.39977 * 119.71480 * 168.93899 * 7 5 4 9 9 C 1.39508 * 118.14469 * 179.53516 * 8 7 5 10 10 C 1.47567 * 120.68217 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99919 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00124 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47165 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99756 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00392 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99762 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47130 * 60.00292 * 18 16 14 20 20 H 1.48501 * 109.46996 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47351 * 300.00122 * 18 16 14 22 22 C 1.40598 * 118.63449 * 359.95493 * 9 8 7 23 23 O 1.35230 * 119.49977 * 180.18457 * 22 9 8 24 24 N 1.32169 * 120.99582 * 0.16272 * 22 9 8 25 25 C 1.32158 * 122.36899 * 359.95599 * 24 22 9 26 26 C 1.50594 * 118.75053 * 179.76452 * 25 24 22 27 27 H 1.08998 * 109.47063 * 299.97017 * 1 2 3 28 28 H 1.09000 * 109.46719 * 59.96741 * 1 2 3 29 29 H 1.09001 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47080 * 300.03241 * 3 2 1 32 32 H 1.09000 * 109.46914 * 60.03051 * 3 2 1 33 33 H 1.09002 * 109.88604 * 175.40153 * 4 2 1 34 34 H 1.09000 * 109.88182 * 296.41599 * 4 2 1 35 35 H 1.08005 * 120.92587 * 359.51150 * 8 7 5 36 36 H 0.97002 * 119.99948 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47166 * 299.99787 * 13 12 10 38 38 H 1.08997 * 109.47369 * 60.00604 * 13 12 10 39 39 H 0.96995 * 120.00441 * 180.02562 * 17 16 14 40 40 H 0.96697 * 113.99674 * 90.00165 * 23 22 9 41 41 H 1.09008 * 109.11810 * 36.73548 * 26 25 24 42 42 H 1.09000 * 109.12228 * 277.65286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0417 -0.7240 1.2524 5 6 1.4288 -2.1093 1.2567 6 8 0.9929 -2.5997 2.2768 7 6 1.3811 -2.8379 -0.0240 8 6 1.0436 -4.1964 -0.0374 9 6 0.9988 -4.8512 -1.2684 10 6 0.6500 -6.2829 -1.3474 11 8 0.6141 -6.8412 -2.4269 12 7 0.3711 -6.9716 -0.2230 13 6 0.0253 -8.3931 -0.3014 14 6 -0.2398 -8.9228 1.0843 15 1 -0.1592 -8.2661 1.9380 16 6 -0.5862 -10.2454 1.2622 17 7 -0.6849 -11.0448 0.2227 18 14 -0.9141 -10.9021 2.9799 19 1 -2.0404 -10.1510 3.5904 20 1 -1.2647 -12.3429 2.9005 21 1 0.3027 -10.7346 3.8146 22 6 1.2924 -4.1190 -2.4322 23 8 1.2505 -4.7355 -3.6350 24 7 1.6083 -2.8372 -2.3683 25 6 1.6650 -2.1787 -1.2239 26 6 2.0390 -0.7201 -1.2453 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1306 1.4418 -0.0005 31 1 1.6771 1.9564 -0.8897 32 1 1.6780 1.9560 0.8903 33 1 3.1286 -0.7996 1.2189 34 1 1.7355 -0.1803 2.1460 35 1 0.8244 -4.7229 0.8798 36 1 0.3993 -6.5261 0.6382 37 1 -0.8677 -8.5165 -0.9141 38 1 0.8523 -8.9440 -0.7492 39 1 -0.9289 -11.9752 0.3478 40 1 0.3852 -4.7002 -4.0651 41 1 1.6055 -0.2533 -2.1299 42 1 3.1243 -0.6304 -1.2911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332682292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:17 Heat of formation + Delta-G solvation = -119.027785 kcal Electronic energy + Delta-G solvation = -26463.901678 eV Core-core repulsion = 22600.561520 eV Total energy + Delta-G solvation = -3863.340158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51924 -40.92768 -39.84680 -38.66560 -37.74453 -36.22409 -34.72124 -33.87258 -32.32866 -30.06530 -29.50171 -28.40600 -28.06006 -25.38378 -24.80628 -24.12859 -22.33550 -21.49685 -20.23997 -19.82431 -18.82015 -18.31955 -17.96201 -17.22468 -16.95394 -16.89850 -16.26406 -16.12496 -16.06247 -15.89592 -15.37347 -15.27516 -15.10406 -14.58424 -14.41497 -14.10456 -14.00361 -13.80022 -13.44830 -13.01209 -12.98397 -12.94059 -12.81122 -12.72801 -12.58396 -12.28660 -12.21478 -11.73500 -11.69174 -11.57010 -11.42970 -11.21679 -10.84577 -10.74066 -10.62296 -10.18447 -9.88370 -8.33321 -6.50476 -0.92182 -0.47066 1.03173 1.40403 1.44366 1.52600 1.76491 2.07219 2.24746 2.39404 2.53370 2.80717 3.01470 3.15390 3.32147 3.50732 3.65233 3.71018 3.80187 3.91697 4.10503 4.19163 4.36450 4.51398 4.55428 4.67744 4.78377 4.85620 4.90981 4.98958 5.01028 5.04400 5.11021 5.15570 5.17303 5.32272 5.35682 5.37217 5.55257 5.56165 5.77670 6.28831 6.36863 6.55291 6.57732 6.71009 7.13644 7.28087 8.78540 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.003285 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.677607 B = 8520.936726 C = 9930.862817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.149 4.149 5 C 0.412 3.588 6 O -0.483 6.483 7 C -0.250 4.250 8 C 0.026 3.974 9 C -0.230 4.230 10 C 0.546 3.454 11 O -0.570 6.570 12 N -0.702 5.702 13 C 0.269 3.731 14 C -0.562 4.562 15 H 0.080 0.920 16 C 0.008 3.992 17 N -0.927 5.927 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.402 3.598 23 O -0.472 6.472 24 N -0.522 5.522 25 C 0.242 3.758 26 C -0.070 4.070 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.153 0.847 36 H 0.403 0.597 37 H -0.004 1.004 38 H -0.007 1.007 39 H 0.271 0.729 40 H 0.424 0.576 41 H 0.114 0.886 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 30.130 0.819 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.186 4.186 5 C 0.291 3.709 6 O -0.360 6.360 7 C -0.253 4.253 8 C 0.001 3.999 9 C -0.236 4.236 10 C 0.333 3.667 11 O -0.451 6.451 12 N -0.352 5.352 13 C 0.147 3.853 14 C -0.600 4.600 15 H 0.098 0.902 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.188 1.188 22 C 0.221 3.779 23 O -0.283 6.283 24 N -0.242 5.242 25 C 0.103 3.897 26 C -0.107 4.107 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.170 0.830 36 H 0.239 0.761 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.079 0.921 40 H 0.288 0.712 41 H 0.132 0.868 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.232 29.499 -0.187 30.150 hybrid contribution -1.078 -1.771 1.187 2.389 sum 5.154 27.728 1.000 28.221 Atomic orbital electron populations 1.22104 0.94652 1.00933 1.03770 1.20511 0.95626 0.97212 0.91490 1.21817 1.02300 0.91597 1.03487 1.22573 1.03798 0.90917 1.01301 1.23006 0.73748 0.89323 0.84855 1.90587 1.38900 1.70812 1.35708 1.21429 1.10908 0.94738 0.98187 1.22104 0.86961 0.93913 0.96960 1.21011 1.11938 0.95094 0.95599 1.18280 0.77664 0.86348 0.84444 1.90747 1.54208 1.71144 1.28987 1.46170 1.67983 1.12327 1.08709 1.18621 0.93558 0.76008 0.97143 1.21550 1.49466 0.96463 0.92510 0.90192 1.26018 0.94138 0.96751 1.02297 1.70108 1.47366 1.06538 1.32527 0.85231 0.79298 0.77115 0.77752 1.18711 1.20711 1.18777 1.19362 0.86910 0.86153 0.85426 1.84578 1.39103 1.74549 1.30023 1.67291 1.18365 1.07829 1.30682 1.22171 0.85238 0.97365 0.84877 1.20886 1.04433 0.84676 1.00701 0.91103 0.90538 0.95243 0.90513 0.90995 0.91186 0.84998 0.86862 0.82953 0.76092 0.98616 0.98897 0.92061 0.71240 0.86818 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.99 71.98 0.58 -1.12 16 2 C -0.05 -0.36 0.77 -52.17 -0.04 -0.40 16 3 C -0.13 -0.32 8.48 71.98 0.61 0.29 16 4 C -0.15 -1.48 5.07 30.25 0.15 -1.32 16 5 C 0.41 8.32 5.70 28.36 0.16 8.48 16 6 O -0.48 -13.37 17.30 -3.04 -0.05 -13.42 16 7 C -0.25 -5.71 5.04 -20.05 -0.10 -5.81 16 8 C 0.03 0.75 9.17 23.00 0.21 0.96 16 9 C -0.23 -7.77 5.90 -19.93 -0.12 -7.89 16 10 C 0.55 23.80 7.77 86.71 0.67 24.48 16 11 O -0.57 -28.81 15.19 16.83 0.26 -28.55 16 12 N -0.70 -31.85 5.50 -469.97 -2.59 -34.43 16 13 C 0.27 15.14 5.43 85.63 0.46 15.60 16 14 C -0.56 -31.41 9.28 25.60 0.24 -31.18 16 15 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 16 C 0.01 0.46 5.46 84.66 0.46 0.92 16 17 N -0.93 -56.32 13.29 21.44 0.28 -56.04 16 18 Si 0.98 43.12 29.54 68.60 2.03 45.14 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 C 0.40 12.43 7.76 85.22 0.66 13.09 16 23 O -0.47 -14.95 11.64 -64.29 -0.75 -15.69 16 24 N -0.52 -13.19 10.23 -294.96 -3.02 -16.20 16 25 C 0.24 4.79 6.16 42.86 0.26 5.05 16 26 C -0.07 -0.69 4.64 29.68 0.14 -0.55 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.03 0.48 6.02 -2.39 -0.01 0.46 16 30 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.15 4.33 6.23 -2.91 -0.02 4.31 16 36 H 0.40 15.79 6.43 -92.71 -0.60 15.19 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.42 9.88 9.06 -74.06 -0.67 9.21 16 41 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.08 351.82 0.33 -78.75 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.19 Total: 19.83 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 4.35 Total: 20.61 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -5.32 Total: -106.67 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.55 Total: -57.67 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -79.08 0.33 -78.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332682292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.274 kcal (2) G-P(sol) polarization free energy of solvation -79.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds