Wall clock time and date at job start Tue Mar 31 2020 12:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48499 * 109.46947 * 239.99817 * 3 2 1 5 5 H 1.48499 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47400 * 119.99932 * 3 2 1 7 7 C 1.37875 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46917 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46717 * 179.97438 * 10 9 7 12 12 C 1.35985 * 116.99601 * 179.97438 * 11 10 9 13 13 C 1.38784 * 120.49986 * 0.02562 * 12 11 10 14 14 C 1.38785 * 118.45107 * 180.02562 * 13 12 11 15 15 C 1.38081 * 119.35670 * 359.97438 * 14 13 12 16 16 N 1.31958 * 120.95912 * 359.97438 * 15 14 13 17 17 C 1.32282 * 121.68626 * 0.02562 * 16 15 14 18 18 N 1.39479 * 119.72627 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00080 * 359.97438 * 18 17 16 20 20 O 1.21623 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.47051 * 119.99780 * 179.97438 * 19 18 17 22 22 C 1.32117 * 118.87900 * 179.72853 * 21 19 18 23 23 C 1.50265 * 122.57997 * 180.14646 * 22 21 19 24 24 O 1.42894 * 110.14090 * 344.80482 * 23 22 21 25 25 C 1.43275 * 113.10286 * 50.33572 * 24 23 22 26 26 C 1.50415 * 118.88051 * 0.02562 * 21 19 18 27 27 H 0.97006 * 120.00540 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47082 * 59.99898 * 9 7 2 29 29 H 1.08999 * 109.46809 * 300.00062 * 9 7 2 30 30 H 1.09002 * 109.47217 * 60.00309 * 10 9 7 31 31 H 1.09001 * 109.46882 * 300.00212 * 10 9 7 32 32 H 1.08011 * 120.77348 * 0.26559 * 13 12 11 33 33 H 1.08001 * 120.31763 * 180.02562 * 14 13 12 34 34 H 1.08006 * 119.51937 * 179.97438 * 15 14 13 35 35 H 0.97004 * 119.99501 * 179.97438 * 18 17 16 36 36 H 1.08003 * 118.70983 * 0.37417 * 22 21 19 37 37 H 1.08999 * 109.50390 * 224.50295 * 23 22 21 38 38 H 1.09001 * 109.07862 * 104.84306 * 23 22 21 39 39 H 1.09003 * 109.63697 * 171.46182 * 25 24 23 40 40 H 1.09005 * 109.63519 * 50.84443 * 25 24 23 41 41 H 1.08997 * 109.45757 * 283.34659 * 26 21 19 42 42 H 1.08997 * 109.45449 * 43.29153 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5308 -4.8996 0.0024 12 6 2.2715 -6.0400 0.0030 13 6 3.6581 -5.9794 0.0036 14 6 4.3719 -7.1696 0.0037 15 6 3.6880 -8.3691 0.0037 16 7 2.3687 -8.3984 0.0042 17 6 1.6491 -7.2884 0.0042 18 7 0.2565 -7.3670 0.0052 19 6 -0.3505 -8.5703 0.0058 20 8 0.3160 -9.5876 0.0058 21 6 -1.8187 -8.6531 0.0075 22 6 -2.3906 -9.8440 0.0025 23 6 -3.8823 -10.0252 0.0005 24 8 -4.5272 -8.8007 0.3562 25 6 -4.0620 -7.6789 -0.4040 26 6 -2.6182 -7.3790 0.0080 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 2.8713 -3.6039 0.8923 31 1 2.8727 -3.6046 -0.8877 32 1 4.1696 -5.0281 0.0079 33 1 5.4518 -7.1576 0.0045 34 1 4.2409 -9.2969 0.0034 35 1 -0.2750 -6.5555 0.0056 36 1 -1.7613 -10.7218 0.0035 37 1 -4.1558 -10.7993 0.7176 38 1 -4.2033 -10.3264 -0.9967 39 1 -4.6894 -6.8116 -0.1985 40 1 -4.0973 -7.9168 -1.4671 41 1 -2.6090 -6.9450 1.0078 42 1 -2.1783 -6.6741 -0.6975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342081129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:32 Heat of formation + Delta-G solvation = -81.320100 kcal Electronic energy + Delta-G solvation = -25848.235784 eV Core-core repulsion = 21986.530755 eV Total energy + Delta-G solvation = -3861.705030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17636 -40.96742 -39.74130 -39.06784 -36.13351 -35.45472 -34.83043 -32.92191 -32.34962 -32.00646 -30.43936 -27.34141 -27.16551 -25.32783 -24.67824 -23.94562 -22.95280 -21.99522 -20.05951 -19.34586 -18.89267 -18.48410 -18.04117 -17.41243 -17.22383 -17.14210 -16.55162 -16.45148 -16.22768 -15.93663 -15.86429 -15.22342 -14.98317 -14.90574 -14.54129 -14.34776 -14.16491 -13.74526 -13.62202 -13.48163 -13.31663 -12.82331 -12.72811 -12.56701 -12.45809 -11.94967 -11.93869 -11.73041 -11.64049 -11.46745 -11.40490 -10.77166 -10.59985 -10.45741 -10.23449 -10.18660 -8.90363 -8.25166 -6.37814 -0.12298 0.25347 0.42203 1.42840 1.45302 1.53131 1.76389 2.07541 2.08598 2.44162 2.85352 2.88508 3.10011 3.27499 3.57169 3.65078 3.81812 3.82750 3.93600 4.09233 4.23818 4.26933 4.28290 4.31814 4.41690 4.43867 4.50581 4.65938 4.73631 4.78805 4.91478 4.92992 5.07879 5.16444 5.23991 5.30203 5.37438 5.50219 5.52458 5.73003 6.06661 6.07881 6.13974 6.30189 6.76535 6.85651 7.17238 7.32163 8.87093 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.003297 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.871158 B = 8491.084880 C =10990.885064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.042 3.958 13 C -0.148 4.148 14 C -0.142 4.142 15 C 0.073 3.927 16 N -0.474 5.474 17 C 0.306 3.694 18 N -0.647 5.647 19 C 0.540 3.460 20 O -0.520 6.520 21 C -0.185 4.185 22 C -0.095 4.095 23 C 0.084 3.916 24 O -0.393 6.393 25 C 0.061 3.939 26 C -0.124 4.124 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.001 0.999 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.188 0.812 35 H 0.427 0.573 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -17.804 -1.307 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.243 6.243 12 C -0.008 4.008 13 C -0.174 4.174 14 C -0.163 4.163 15 C -0.084 4.084 16 N -0.189 5.189 17 C 0.074 3.926 18 N -0.295 5.295 19 C 0.330 3.670 20 O -0.395 6.395 21 C -0.188 4.188 22 C -0.115 4.115 23 C 0.008 3.992 24 O -0.312 6.312 25 C -0.015 4.015 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.176 0.824 33 H 0.195 0.805 34 H 0.205 0.795 35 H 0.266 0.734 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.827 -19.171 -1.163 19.293 hybrid contribution 0.908 2.279 -0.130 2.457 sum -0.919 -16.892 -1.293 16.966 Atomic orbital electron populations 1.70087 1.07852 1.28187 1.50539 1.25941 0.95763 1.03371 0.94290 0.85430 0.78198 0.77691 0.79326 1.18973 1.21012 1.19010 1.21366 0.93856 0.91059 1.52137 0.91136 1.18936 0.94495 0.90912 0.96312 1.22980 0.95678 0.79547 1.00930 1.86028 1.36704 1.13063 1.88494 1.19748 0.92232 0.86149 1.02704 1.21926 0.91325 1.01958 1.02240 1.22306 1.03160 0.90982 0.99844 1.23091 0.88006 0.99902 0.97397 1.67677 1.09594 1.27183 1.14495 1.18011 0.85419 0.87253 1.01875 1.43448 1.03718 1.10742 1.71587 1.19090 0.89293 0.82608 0.76010 1.90824 1.66623 1.34788 1.47270 1.20821 0.90684 0.97887 1.09443 1.23988 0.99403 0.97395 0.90673 1.21857 0.85924 0.87705 1.03711 1.88130 1.62872 1.17122 1.63053 1.22769 0.92936 0.90000 0.95815 1.21152 0.96664 0.94298 1.03974 0.92511 0.97923 0.98017 0.91788 0.91702 0.82360 0.80475 0.79534 0.73361 0.84981 0.84711 0.88453 0.86460 0.91098 0.89490 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -29.03 9.11 25.60 0.23 -28.79 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.08 3.24 4.70 71.98 0.34 3.58 16 11 O -0.33 -12.37 9.38 -93.38 -0.88 -13.25 16 12 C 0.04 1.42 6.72 22.70 0.15 1.57 16 13 C -0.15 -4.03 9.14 22.53 0.21 -3.83 16 14 C -0.14 -3.11 10.10 22.36 0.23 -2.88 16 15 C 0.07 1.85 11.17 84.64 0.95 2.79 16 16 N -0.47 -16.05 7.87 -192.63 -1.52 -17.57 16 17 C 0.31 10.57 7.44 133.02 0.99 11.56 16 18 N -0.65 -20.72 5.33 -311.34 -1.66 -22.38 16 19 C 0.54 17.06 7.69 86.55 0.67 17.72 16 20 O -0.52 -19.39 14.31 -4.10 -0.06 -19.45 16 21 C -0.19 -4.49 5.86 -18.62 -0.11 -4.59 16 22 C -0.09 -1.90 9.58 24.57 0.24 -1.67 16 23 C 0.08 1.19 7.04 71.10 0.50 1.69 16 24 O -0.39 -7.43 10.83 -148.98 -1.61 -9.05 16 25 C 0.06 1.02 6.88 72.02 0.50 1.52 16 26 C -0.12 -2.52 5.29 29.79 0.16 -2.36 16 27 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 31 H 0.06 2.35 7.70 -2.39 -0.02 2.34 16 32 H 0.16 3.84 6.44 -2.91 -0.02 3.82 16 33 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.43 12.56 6.35 -92.71 -0.59 11.97 16 36 H 0.13 2.76 7.29 -2.91 -0.02 2.74 16 37 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.79 7.31 -2.39 -0.02 1.77 16 Total: -1.00 -72.52 355.29 2.71 -69.82 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.46 Total: 22.97 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.66 Total: -1.24 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -2.89 Total: -93.56 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.55 Total: -41.75 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -72.52 2.71 -69.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342081129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.505 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds