Wall clock time and date at job start Tue Mar 31 2020 12:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00383 * 2 1 4 4 H 1.48492 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.47055 * 60.00019 * 3 2 1 7 7 C 1.37883 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99378 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00169 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.34769 * 119.99862 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99828 * 180.02562 * 11 10 9 14 14 O 1.42902 * 109.46889 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99756 * 180.02562 * 14 13 11 16 16 C 1.38803 * 120.02022 * 359.97438 * 15 14 13 17 17 C 1.38167 * 120.08265 * 179.97438 * 16 15 14 18 18 C 1.38164 * 120.12835 * 0.02562 * 17 16 15 19 19 C 1.38886 * 120.03876 * 359.95775 * 18 17 16 20 20 N 1.39923 * 120.04410 * 180.02562 * 19 18 17 21 21 C 1.34772 * 119.99727 * 33.32395 * 20 19 18 22 22 O 1.21284 * 120.00701 * 5.28356 * 21 20 19 23 23 C 1.50707 * 119.99659 * 185.27602 * 21 20 19 24 24 C 1.52997 * 117.49812 * 248.62316 * 23 21 20 25 25 C 1.52992 * 60.00231 * 252.51614 * 24 23 21 26 26 C 1.38584 * 120.01793 * 179.72893 * 15 14 13 27 27 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46942 * 59.99360 * 9 7 2 29 29 H 1.09000 * 109.46716 * 299.99700 * 9 7 2 30 30 H 0.97004 * 119.99676 * 0.02562 * 10 9 7 31 31 H 1.09006 * 109.47247 * 60.00328 * 13 11 10 32 32 H 1.08992 * 109.47542 * 299.99848 * 13 11 10 33 33 H 1.07997 * 119.96152 * 359.96072 * 16 15 14 34 34 H 1.08003 * 119.93847 * 180.02562 * 17 16 15 35 35 H 1.08007 * 119.97989 * 179.97438 * 18 17 16 36 36 H 0.96997 * 119.99656 * 213.33279 * 20 19 18 37 37 H 1.08995 * 115.55086 * 34.33619 * 23 21 20 38 38 H 1.09001 * 117.50345 * 0.02562 * 24 23 21 39 39 H 1.09002 * 117.49910 * 145.01870 * 24 23 21 40 40 H 1.09006 * 117.49676 * 252.51459 * 25 24 23 41 41 H 1.08999 * 117.52124 * 107.48522 * 25 24 23 42 42 H 1.08005 * 120.06368 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1050 0.0000 13 6 2.7328 -6.0289 0.0006 14 8 2.0182 -7.2664 0.0005 15 6 2.7583 -8.4062 0.0015 16 6 4.1445 -8.3341 0.0021 17 6 4.8982 -9.4921 0.0036 18 6 4.2750 -10.7252 0.0041 19 6 2.8883 -10.8034 0.0039 20 7 2.2571 -12.0521 0.0050 21 6 2.8234 -13.0928 0.6473 22 8 3.8293 -12.9257 1.3040 23 6 2.2066 -14.4644 0.5496 24 6 1.5684 -15.0436 1.8138 25 6 2.8965 -15.6043 1.3016 26 6 2.1295 -9.6412 0.0071 27 1 -0.4849 0.8400 0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0009 31 1 3.3588 -5.9713 0.8911 32 1 3.3601 -5.9711 -0.8888 33 1 4.6345 -7.3717 0.0010 34 1 5.9766 -9.4332 0.0045 35 1 4.8665 -11.6288 0.0049 36 1 1.4120 -12.1687 -0.4567 37 1 1.7382 -14.7024 -0.4053 38 1 1.5942 -14.4325 2.7160 39 1 0.6797 -15.6626 1.6907 40 1 2.8816 -16.5924 0.8414 41 1 3.7967 -15.3624 1.8666 42 1 1.0510 -9.6992 0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353344556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:55 Heat of formation + Delta-G solvation = -56.122253 kcal Electronic energy + Delta-G solvation = -24557.214427 eV Core-core repulsion = 20696.602057 eV Total energy + Delta-G solvation = -3860.612369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03871 -40.04895 -38.75097 -37.56865 -36.40643 -34.85550 -34.25425 -32.42594 -30.97547 -29.65973 -28.71969 -26.62306 -25.32556 -22.97077 -22.95163 -22.83236 -21.86519 -20.43568 -19.88666 -18.59378 -18.09345 -17.42480 -16.41344 -16.23342 -16.20156 -15.97292 -15.73449 -15.24772 -15.16671 -14.96388 -14.40654 -14.11958 -14.09823 -13.80734 -13.20332 -13.07305 -12.82482 -12.64683 -12.16212 -12.05737 -12.02037 -11.88098 -11.34788 -11.16794 -11.13331 -11.03507 -10.99271 -10.92536 -10.52642 -10.35714 -10.19880 -9.43632 -9.16526 -8.79960 -8.66005 -8.17567 -7.99461 -6.20993 -4.28446 0.99849 1.32224 2.07530 2.45031 2.97765 3.17689 3.21296 3.28660 3.31167 3.31582 3.64410 4.10389 4.16346 4.25563 4.34656 4.35221 4.56074 4.67269 4.91779 4.97955 5.08454 5.10119 5.15022 5.16972 5.19007 5.26239 5.34090 5.36082 5.42079 5.51672 5.62072 5.99539 6.07016 6.16427 6.33238 6.63433 6.99457 7.19534 7.26823 7.36810 7.44893 7.60481 7.70203 7.90761 8.49334 8.70589 8.96371 9.38089 10.89214 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.001773 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.296750 B =15790.096748 C =16278.696332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.040 3.960 14 O -0.285 6.285 15 C 0.155 3.845 16 C -0.224 4.224 17 C -0.060 4.060 18 C -0.162 4.162 19 C 0.181 3.819 20 N -0.668 5.668 21 C 0.544 3.456 22 O -0.517 6.517 23 C -0.198 4.198 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.178 4.178 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.414 0.586 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -28.987 -0.673 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.039 4.039 14 O -0.197 6.197 15 C 0.108 3.892 16 C -0.244 4.244 17 C -0.079 4.079 18 C -0.182 4.182 19 C 0.087 3.913 20 N -0.312 5.312 21 C 0.332 3.668 22 O -0.392 6.392 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.183 4.183 26 C -0.199 4.199 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.250 0.750 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.500 -28.911 -0.203 29.869 hybrid contribution 0.594 1.149 -0.337 1.337 sum 8.094 -27.762 -0.539 28.923 Atomic orbital electron populations 1.69984 1.06130 1.27305 1.48727 1.24960 0.94931 0.99513 0.94610 0.86333 0.79789 0.82833 0.77784 1.19616 1.20766 1.20768 1.21245 0.93349 0.90298 1.53444 0.91718 1.19177 0.88199 0.81575 0.98029 1.46350 1.11420 1.05380 1.72585 1.19877 0.89136 0.83957 0.78740 1.90711 1.16422 1.84527 1.49382 1.22653 0.95058 0.82725 1.03420 1.86184 1.34080 1.11573 1.87875 1.18712 0.89800 0.86275 0.94433 1.21315 0.92624 1.00050 1.10366 1.20795 0.99799 0.91182 0.96093 1.20976 0.92684 0.98775 1.05800 1.17301 0.91653 0.83738 0.98563 1.43427 1.25835 1.08068 1.53914 1.19832 0.83943 0.85115 0.77943 1.90733 1.24658 1.84531 1.39244 1.22179 1.07911 0.92195 0.99594 1.22992 0.97568 1.02716 0.95595 1.22987 0.97302 0.96087 1.01890 1.19988 1.00456 0.88630 1.10849 0.92420 0.95276 0.95270 0.77511 0.89267 0.89254 0.85054 0.85333 0.84898 0.75027 0.85398 0.88024 0.87469 0.87656 0.87248 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.41 5.55 -61.47 -0.34 -14.75 16 11 C 0.50 9.97 7.91 -10.99 -0.09 9.88 16 12 O -0.53 -13.26 16.50 -14.35 -0.24 -13.49 16 13 C 0.04 0.58 5.22 36.01 0.19 0.77 16 14 O -0.29 -4.61 9.67 -39.35 -0.38 -4.99 16 15 C 0.15 2.09 6.68 -39.24 -0.26 1.83 16 16 C -0.22 -2.57 9.03 -39.40 -0.36 -2.92 16 17 C -0.06 -0.64 10.03 -39.63 -0.40 -1.04 16 18 C -0.16 -1.87 8.65 -39.37 -0.34 -2.21 16 19 C 0.18 2.04 6.28 -83.72 -0.53 1.51 16 20 N -0.67 -5.66 5.34 -9.88 -0.05 -5.72 16 21 C 0.54 5.04 7.35 -10.98 -0.08 4.96 16 22 O -0.52 -6.65 13.94 5.55 0.08 -6.57 16 23 C -0.20 -1.14 6.19 -91.77 -0.57 -1.71 16 24 C -0.15 -0.76 10.23 -26.74 -0.27 -1.03 16 25 C -0.15 -0.79 10.04 -26.73 -0.27 -1.06 16 26 C -0.18 -2.19 9.90 -39.25 -0.39 -2.58 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.39 6.58 8.32 -40.82 -0.34 6.24 16 31 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 33 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.13 1.56 6.41 -52.48 -0.34 1.22 16 36 H 0.41 2.20 8.82 -40.82 -0.36 1.84 16 37 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.77 7.67 -51.93 -0.40 0.37 16 42 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -35.70 366.53 -8.98 -44.68 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.48 Total: 5.10 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -3.81 Total: -0.27 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.34 Total: -45.51 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.54 Total: -25.06 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.70 -8.98 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353344556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.446 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds