Wall clock time and date at job start Tue Mar 31 2020 12:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00383 * 2 1 4 4 H 1.48492 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.47055 * 60.00019 * 3 2 1 7 7 C 1.37883 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99378 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00169 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47053 * 179.97438 * 9 7 2 11 11 C 1.34769 * 119.99862 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99828 * 180.02562 * 11 10 9 14 14 O 1.42902 * 109.46889 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99756 * 180.02562 * 14 13 11 16 16 C 1.38803 * 120.02022 * 359.97438 * 15 14 13 17 17 C 1.38167 * 120.08265 * 179.97438 * 16 15 14 18 18 C 1.38164 * 120.12835 * 0.02562 * 17 16 15 19 19 C 1.38886 * 120.03876 * 359.95775 * 18 17 16 20 20 N 1.39923 * 120.04410 * 180.02562 * 19 18 17 21 21 C 1.34772 * 119.99727 * 33.32395 * 20 19 18 22 22 O 1.21284 * 120.00701 * 5.28356 * 21 20 19 23 23 C 1.50707 * 119.99659 * 185.27602 * 21 20 19 24 24 C 1.52997 * 117.49812 * 248.62316 * 23 21 20 25 25 C 1.52992 * 60.00231 * 252.51614 * 24 23 21 26 26 C 1.38584 * 120.01793 * 179.72893 * 15 14 13 27 27 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46942 * 59.99360 * 9 7 2 29 29 H 1.09000 * 109.46716 * 299.99700 * 9 7 2 30 30 H 0.97004 * 119.99676 * 0.02562 * 10 9 7 31 31 H 1.09006 * 109.47247 * 60.00328 * 13 11 10 32 32 H 1.08992 * 109.47542 * 299.99848 * 13 11 10 33 33 H 1.07997 * 119.96152 * 359.96072 * 16 15 14 34 34 H 1.08003 * 119.93847 * 180.02562 * 17 16 15 35 35 H 1.08007 * 119.97989 * 179.97438 * 18 17 16 36 36 H 0.96997 * 119.99656 * 213.33279 * 20 19 18 37 37 H 1.08995 * 115.55086 * 34.33619 * 23 21 20 38 38 H 1.09001 * 117.50345 * 0.02562 * 24 23 21 39 39 H 1.09002 * 117.49910 * 145.01870 * 24 23 21 40 40 H 1.09006 * 117.49676 * 252.51459 * 25 24 23 41 41 H 1.08999 * 117.52124 * 107.48522 * 25 24 23 42 42 H 1.08005 * 120.06368 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1050 0.0000 13 6 2.7328 -6.0289 0.0006 14 8 2.0182 -7.2664 0.0005 15 6 2.7583 -8.4062 0.0015 16 6 4.1445 -8.3341 0.0021 17 6 4.8982 -9.4921 0.0036 18 6 4.2750 -10.7252 0.0041 19 6 2.8883 -10.8034 0.0039 20 7 2.2571 -12.0521 0.0050 21 6 2.8234 -13.0928 0.6473 22 8 3.8293 -12.9257 1.3040 23 6 2.2066 -14.4644 0.5496 24 6 1.5684 -15.0436 1.8138 25 6 2.8965 -15.6043 1.3016 26 6 2.1295 -9.6412 0.0071 27 1 -0.4849 0.8400 0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0009 31 1 3.3588 -5.9713 0.8911 32 1 3.3601 -5.9711 -0.8888 33 1 4.6345 -7.3717 0.0010 34 1 5.9766 -9.4332 0.0045 35 1 4.8665 -11.6288 0.0049 36 1 1.4120 -12.1687 -0.4567 37 1 1.7382 -14.7024 -0.4053 38 1 1.5942 -14.4325 2.7160 39 1 0.6797 -15.6626 1.6907 40 1 2.8816 -16.5924 0.8414 41 1 3.7967 -15.3624 1.8666 42 1 1.0510 -9.6992 0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353344556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:54 Heat of formation + Delta-G solvation = -81.107886 kcal Electronic energy + Delta-G solvation = -24558.297885 eV Core-core repulsion = 20696.602057 eV Total energy + Delta-G solvation = -3861.695827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85299 -41.13788 -40.14905 -38.54195 -37.03041 -36.19485 -35.65622 -34.41348 -31.96443 -30.63633 -30.14359 -28.29960 -26.02173 -24.68341 -23.83676 -23.34894 -22.86570 -21.53594 -21.15947 -19.51944 -19.19683 -18.64617 -17.72608 -17.41091 -17.37431 -17.13932 -16.76603 -16.49730 -16.26608 -15.96730 -15.73124 -15.65943 -15.02033 -14.63083 -14.59403 -14.16797 -14.09699 -13.87401 -13.65391 -13.54189 -12.98394 -12.89421 -12.76151 -12.46368 -12.33822 -12.22161 -12.09280 -11.56283 -11.51192 -11.46671 -11.34326 -10.97555 -10.86150 -10.83076 -9.92397 -9.54733 -9.07659 -8.29683 -6.46405 0.15122 0.40156 1.37403 1.44067 1.45540 1.53845 1.59230 1.59955 1.99075 2.37985 2.72177 2.85654 2.90536 3.05870 3.55918 3.67322 3.81298 3.89818 3.94878 4.01463 4.13506 4.15094 4.16385 4.20953 4.35227 4.49650 4.66651 4.74356 4.89030 5.02015 5.08434 5.18791 5.20833 5.21398 5.23805 5.29722 5.43111 5.46601 5.62706 5.78323 5.82306 6.31674 6.34269 6.63707 6.80999 7.01532 7.21738 7.39209 8.82792 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.001773 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.296750 B =15790.096748 C =16278.696332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.496 3.504 12 O -0.591 6.591 13 C 0.053 3.947 14 O -0.318 6.318 15 C 0.133 3.867 16 C -0.222 4.222 17 C -0.058 4.058 18 C -0.172 4.172 19 C 0.178 3.822 20 N -0.659 5.659 21 C 0.538 3.462 22 O -0.559 6.559 23 C -0.198 4.198 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.190 4.190 27 H 0.269 0.731 28 H -0.010 1.010 29 H -0.011 1.011 30 H 0.414 0.586 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.428 0.572 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.513 -29.731 -1.129 31.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.282 3.718 12 O -0.472 6.472 13 C -0.025 4.025 14 O -0.231 6.231 15 C 0.087 3.913 16 C -0.241 4.241 17 C -0.076 4.076 18 C -0.192 4.192 19 C 0.083 3.917 20 N -0.305 5.305 21 C 0.328 3.672 22 O -0.437 6.437 23 C -0.219 4.219 24 C -0.182 4.182 25 C -0.186 4.186 26 C -0.211 4.211 27 H 0.077 0.923 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.250 0.750 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.267 0.733 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.105 0.895 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.000 -29.694 -0.675 31.339 hybrid contribution -0.194 1.260 -0.180 1.288 sum 9.805 -28.433 -0.854 30.089 Atomic orbital electron populations 1.70148 1.08338 1.28538 1.49980 1.26081 0.95762 1.03971 0.93850 0.85082 0.79164 0.77220 0.77562 1.17415 1.20572 1.20639 1.21656 0.94506 0.90291 1.52842 0.89345 1.18618 0.88688 0.84048 0.94405 1.46002 1.11662 1.04656 1.72579 1.20902 0.89422 0.84928 0.76535 1.90684 1.19466 1.85419 1.51658 1.22599 0.92961 0.80037 1.06881 1.86119 1.35691 1.12552 1.88734 1.18933 0.90766 0.85535 0.96041 1.21560 0.91641 1.01432 1.09470 1.21122 1.01215 0.90454 0.94810 1.21138 0.92885 0.99248 1.05963 1.17401 0.91811 0.84431 0.98085 1.43440 1.26265 1.07147 1.53625 1.20514 0.83409 0.86301 0.76928 1.90708 1.26601 1.85277 1.41070 1.22275 1.08270 0.89981 1.01345 1.23075 0.98365 1.02341 0.94441 1.23052 0.96657 0.97028 1.01837 1.20110 1.00752 0.88912 1.11343 0.92257 0.99177 0.99255 0.74957 0.85713 0.85412 0.82581 0.82601 0.85345 0.73293 0.82389 0.89658 0.84856 0.85214 0.89480 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 41.61 29.54 68.60 2.03 43.63 16 4 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.56 -29.49 9.28 25.60 0.24 -29.25 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.26 14.33 5.43 85.63 0.46 14.79 16 10 N -0.70 -28.28 5.55 -466.79 -2.59 -30.87 16 11 C 0.50 19.81 7.91 87.66 0.69 20.50 16 12 O -0.59 -30.64 16.50 16.01 0.26 -30.37 16 13 C 0.05 1.40 5.22 71.24 0.37 1.78 16 14 O -0.32 -10.04 9.67 -73.44 -0.71 -10.75 16 15 C 0.13 3.46 6.68 22.49 0.15 3.61 16 16 C -0.22 -4.50 9.03 22.39 0.20 -4.30 16 17 C -0.06 -1.09 10.03 22.24 0.22 -0.87 16 18 C -0.17 -3.81 8.65 22.41 0.19 -3.61 16 19 C 0.18 3.90 6.28 38.14 0.24 4.14 16 20 N -0.66 -10.76 5.34 -303.55 -1.62 -12.38 16 21 C 0.54 9.72 7.35 87.66 0.64 10.37 16 22 O -0.56 -14.57 13.94 -3.04 -0.04 -14.62 16 23 C -0.20 -1.96 6.19 -11.54 -0.07 -2.03 16 24 C -0.14 -1.22 10.23 30.59 0.31 -0.91 16 25 C -0.15 -1.42 10.04 30.59 0.31 -1.11 16 26 C -0.19 -4.63 9.90 22.49 0.22 -4.40 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.41 13.03 8.32 -92.71 -0.77 12.26 16 31 H 0.13 2.45 7.66 -2.38 -0.02 2.43 16 32 H 0.13 2.43 7.66 -2.39 -0.02 2.42 16 33 H 0.16 2.28 6.29 -2.91 -0.02 2.27 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.13 2.97 6.41 -2.91 -0.02 2.95 16 36 H 0.43 4.13 8.82 -92.71 -0.82 3.31 16 37 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.09 1.25 7.67 -2.39 -0.02 1.23 16 42 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -82.56 366.53 1.75 -80.81 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.52 Total: 20.73 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.65 Total: 9.31 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -3.93 Total: -98.75 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.49 Total: -55.74 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -82.56 1.75 -80.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353344556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.294 kcal (2) G-P(sol) polarization free energy of solvation -82.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds