Wall clock time and date at job start Tue Mar 31 2020 13:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32575 * 119.99879 * 2 1 4 4 C 1.47812 * 119.99829 * 7.31616 * 3 2 1 5 5 C 1.39548 * 120.14186 * 220.83612 * 4 3 2 6 6 C 1.37958 * 119.85371 * 179.79181 * 5 4 3 7 7 C 1.38361 * 120.14339 * 0.49654 * 6 5 4 8 8 C 1.38328 * 120.28365 * 359.73504 * 7 6 5 9 9 N 1.48014 * 119.92579 * 180.02562 * 8 7 6 10 10 O 1.21792 * 119.99727 * 180.02562 * 9 8 7 11 11 O 1.21796 * 119.99962 * 0.02562 * 9 8 7 12 12 C 1.37988 * 120.14217 * 0.02901 * 8 7 6 13 13 C 1.50702 * 120.00411 * 179.97438 * 2 1 3 14 14 N 1.46900 * 109.46876 * 275.00085 * 13 2 1 15 15 C 1.47480 * 110.99682 * 189.99846 * 14 13 2 16 16 C 1.53514 * 87.99767 * 138.67308 * 15 14 13 17 17 O 1.42900 * 114.16820 * 87.65095 * 16 15 14 18 18 C 1.50701 * 114.17001 * 220.35565 * 16 15 14 19 19 H 1.08001 * 119.99966 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99653 * 179.97438 * 18 16 15 21 21 N 1.31522 * 119.99637 * 180.02562 * 20 18 16 22 22 Si 1.86797 * 120.00188 * 0.02562 * 20 18 16 23 23 H 1.48501 * 109.47123 * 90.00009 * 22 20 18 24 24 H 1.48497 * 109.46955 * 209.99766 * 22 20 18 25 25 H 1.48490 * 109.47163 * 329.99833 * 22 20 18 26 26 C 1.47478 * 110.99989 * 285.96565 * 14 13 2 27 27 H 1.09004 * 109.47265 * 272.76739 * 1 2 3 28 28 H 1.08993 * 109.47623 * 32.77130 * 1 2 3 29 29 H 1.09002 * 109.46990 * 152.77463 * 1 2 3 30 30 H 1.08004 * 119.99964 * 187.32681 * 3 2 1 31 31 H 1.07994 * 120.07182 * 0.03182 * 5 4 3 32 32 H 1.08005 * 119.92427 * 180.21083 * 6 5 4 33 33 H 1.07996 * 119.85844 * 179.72007 * 7 6 5 34 34 H 1.08008 * 120.07060 * 179.97438 * 12 8 7 35 35 H 1.08996 * 109.47132 * 154.99974 * 13 2 1 36 36 H 1.09002 * 109.46840 * 34.99644 * 13 2 1 37 37 H 1.09000 * 113.47588 * 253.47034 * 15 14 13 38 38 H 1.09002 * 113.48100 * 23.87583 * 15 14 13 39 39 H 0.96703 * 114.00190 * 179.97438 * 17 16 15 40 40 H 0.96999 * 119.99556 * 180.02562 * 21 20 18 41 41 H 1.08994 * 113.47731 * 336.06946 * 26 14 13 42 42 H 1.09000 * 113.47180 * 106.47411 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 1.4397 2.4230 0.1630 5 6 1.7940 3.5360 -0.6005 6 6 1.1058 4.7217 -0.4466 7 6 0.0730 4.8117 0.4697 8 6 -0.2800 3.7134 1.2330 9 7 -1.3865 3.8183 2.2105 10 8 -1.6980 2.8523 2.8836 11 8 -1.9854 4.8707 2.3416 12 6 0.3973 2.5203 1.0852 13 6 2.2605 -1.3051 0.0006 14 7 2.4008 -1.7888 1.3805 15 6 3.3309 -2.9313 1.4480 16 6 3.9095 -2.3155 2.7297 17 8 3.2285 -2.7039 3.9244 18 6 5.4095 -2.4117 2.8379 19 1 5.9785 -2.8839 2.0507 20 6 6.0555 -1.8959 3.9413 21 7 7.3647 -1.9795 4.0355 22 14 5.0713 -1.0786 5.3025 23 1 4.6851 -2.0956 6.3132 24 1 5.8982 -0.0278 5.9486 25 1 3.8486 -0.4626 4.7278 26 6 3.4052 -0.9996 2.1177 27 1 -0.3634 0.0496 1.0265 28 1 -0.3634 0.8640 -0.5562 29 1 -0.3633 -0.9138 -0.4702 30 1 3.2432 1.1520 -0.1193 31 1 2.6027 3.4682 -1.3131 32 1 1.3768 5.5829 -1.0394 33 1 -0.4598 5.7434 0.5896 34 1 0.1210 1.6636 1.6821 35 1 3.2488 -1.1542 -0.4338 36 1 1.7132 -2.0409 -0.5885 37 1 2.8334 -3.8872 1.6118 38 1 4.0415 -2.9623 0.6220 39 1 3.5952 -2.3149 4.7303 40 1 7.8191 -1.6170 4.8120 41 1 4.1361 -0.5144 1.4710 42 1 2.9704 -0.3176 2.8484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354917006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:26 Heat of formation + Delta-G solvation = 44.554490 kcal Electronic energy + Delta-G solvation = -26441.303937 eV Core-core repulsion = 22585.057239 eV Total energy + Delta-G solvation = -3856.246698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31223 -40.06718 -39.52997 -36.72277 -36.34908 -34.61894 -32.49301 -32.38277 -31.45235 -28.73686 -27.63382 -26.64029 -26.00224 -25.24835 -23.24618 -22.72290 -21.77844 -19.53966 -19.20266 -18.80819 -18.00214 -17.65445 -17.36160 -16.86003 -16.28462 -15.78783 -15.44116 -15.30614 -14.80781 -14.53949 -14.20004 -13.60658 -13.37560 -13.18825 -12.97897 -12.87313 -12.59407 -12.38407 -12.14753 -12.10282 -11.87745 -11.68113 -11.55037 -11.30291 -11.26019 -11.06615 -10.79154 -10.56928 -10.48488 -10.15857 -10.02312 -9.83441 -9.36742 -8.99833 -8.65933 -8.51583 -8.20525 -6.39370 -4.43869 -0.35838 0.46323 1.12210 1.23732 2.00633 3.03533 3.08652 3.11638 3.18805 4.06986 4.07688 4.14352 4.41309 4.51485 4.57980 4.62777 4.75933 4.82647 4.90157 4.97278 5.23806 5.31333 5.38001 5.49028 5.56319 5.59221 5.60649 5.64889 5.75742 5.82927 5.87712 5.92326 5.95039 6.10268 6.28051 6.37470 6.41053 6.56644 6.62203 6.78976 6.84143 7.25584 7.49859 7.64367 8.06767 8.62387 8.63521 9.20126 10.73057 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.003585 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.807934 B = 7808.783483 C = 8276.543103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 C -0.155 4.155 4 C -0.030 4.030 5 C -0.063 4.063 6 C -0.117 4.117 7 C -0.066 4.066 8 C -0.043 4.043 9 N 0.029 4.971 10 O -0.156 6.156 11 O -0.165 6.165 12 C -0.052 4.052 13 C 0.047 3.953 14 N -0.463 5.463 15 C 0.018 3.982 16 C 0.203 3.797 17 O -0.548 6.548 18 C -0.535 4.535 19 H 0.087 0.913 20 C 0.079 3.921 21 N -0.881 5.881 22 Si 0.859 3.141 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.254 1.254 26 C -0.031 4.031 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.348 0.652 40 H 0.270 0.730 41 H 0.071 0.929 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 11.960 -11.646 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.063 4.063 3 C -0.174 4.174 4 C -0.030 4.030 5 C -0.081 4.081 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.125 4.125 9 N 0.548 4.452 10 O -0.373 6.373 11 O -0.380 6.380 12 C -0.071 4.071 13 C -0.081 4.081 14 N -0.185 5.185 15 C -0.111 4.111 16 C 0.162 3.838 17 O -0.358 6.358 18 C -0.573 4.573 19 H 0.105 0.895 20 C -0.126 4.126 21 N -0.517 5.517 22 Si 0.687 3.313 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.179 1.179 26 C -0.160 4.160 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.200 0.800 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.870 11.563 -12.214 20.586 hybrid contribution 0.555 1.019 1.008 1.536 sum -11.315 12.582 -11.206 20.296 Atomic orbital electron populations 1.21062 0.92035 1.02284 1.02657 1.22111 0.95900 0.94291 0.93981 1.21363 0.99276 0.89601 1.07210 1.18980 0.94268 0.94992 0.94802 1.21804 0.98107 0.91605 0.96628 1.21134 0.95226 0.98813 0.98332 1.21074 0.96548 0.97582 0.93295 1.21041 0.94925 0.98264 0.98303 1.43651 1.00967 1.00221 1.00370 1.94580 1.70206 1.29253 1.43268 1.94513 1.52955 1.17779 1.72776 1.21463 0.92870 0.96332 0.96409 1.21743 0.98574 0.93733 0.94022 1.69052 1.34971 1.05848 1.08666 1.23952 0.93473 0.95743 0.97882 1.20074 0.90982 0.89895 0.82814 1.86464 1.59922 1.73762 1.15695 1.21302 0.88791 1.39645 1.07576 0.89531 1.24996 0.94938 0.94780 0.97848 1.69869 1.07563 1.44442 1.29845 0.87318 0.80599 0.80273 0.83078 1.19275 1.21274 1.17935 1.24964 0.92960 0.99840 0.98286 0.90342 0.92162 0.91201 0.85147 0.83806 0.83555 0.83172 0.82372 0.93172 0.90237 0.90291 0.90798 0.79972 0.92025 0.91085 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.31 36.00 0.30 -1.09 16 2 C -0.06 -0.78 5.23 -101.26 -0.53 -1.31 16 3 C -0.16 -1.81 8.99 -37.57 -0.34 -2.15 16 4 C -0.03 -0.31 4.99 -105.02 -0.52 -0.84 16 5 C -0.06 -0.50 9.79 -39.20 -0.38 -0.89 16 6 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 7 C -0.07 -0.59 9.55 -39.50 -0.38 -0.96 16 8 C -0.04 -0.50 6.84 -80.01 -0.55 -1.05 16 9 N 0.03 0.40 4.45 33.93 0.15 0.55 16 10 O -0.16 -2.40 18.44 -29.46 -0.54 -2.95 16 11 O -0.17 -2.32 18.44 -29.46 -0.54 -2.86 16 12 C -0.05 -0.61 7.38 -39.20 -0.29 -0.90 16 13 C 0.05 0.67 5.00 -4.98 -0.02 0.65 16 14 N -0.46 -8.45 6.40 -245.91 -1.58 -10.02 16 15 C 0.02 0.35 7.12 -7.55 -0.05 0.30 16 16 C 0.20 4.73 1.10 -91.18 -0.10 4.63 16 17 O -0.55 -13.41 13.32 -35.23 -0.47 -13.87 16 18 C -0.54 -14.22 9.27 -34.44 -0.32 -14.54 16 19 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.88 -25.26 13.96 55.43 0.77 -24.48 16 22 Si 0.86 19.94 24.41 -169.99 -4.15 15.79 16 23 H -0.27 -6.01 7.06 56.52 0.40 -5.61 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.25 -5.70 5.47 56.52 0.31 -5.39 16 26 C -0.03 -0.63 5.83 -7.49 -0.04 -0.68 16 27 H 0.08 0.95 6.67 -51.93 -0.35 0.61 16 28 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 29 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.13 1.49 7.99 -52.48 -0.42 1.07 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.15 1.10 7.60 -52.49 -0.40 0.70 16 34 H 0.16 2.03 5.46 -52.48 -0.29 1.74 16 35 H 0.05 0.70 7.40 -51.93 -0.38 0.31 16 36 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.07 1.36 7.72 -51.93 -0.40 0.96 16 39 H 0.35 8.26 3.17 45.56 0.14 8.40 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 42 H 0.07 1.45 7.13 -51.93 -0.37 1.08 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.43 348.24 -9.80 -40.23 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.97 Total: 10.38 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.73 Total: -18.01 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.65 Total: -33.95 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.56 Total: -19.68 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.15 Total: 15.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.43 -9.80 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354917006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.783 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds