Wall clock time and date at job start Tue Mar 31 2020 13:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32575 * 119.99879 * 2 1 4 4 C 1.47812 * 119.99829 * 7.31616 * 3 2 1 5 5 C 1.39548 * 120.14186 * 220.83612 * 4 3 2 6 6 C 1.37958 * 119.85371 * 179.79181 * 5 4 3 7 7 C 1.38361 * 120.14339 * 0.49654 * 6 5 4 8 8 C 1.38328 * 120.28365 * 359.73504 * 7 6 5 9 9 N 1.48014 * 119.92579 * 180.02562 * 8 7 6 10 10 O 1.21792 * 119.99727 * 180.02562 * 9 8 7 11 11 O 1.21796 * 119.99962 * 0.02562 * 9 8 7 12 12 C 1.37988 * 120.14217 * 0.02901 * 8 7 6 13 13 C 1.50702 * 120.00411 * 179.97438 * 2 1 3 14 14 N 1.46900 * 109.46876 * 275.00085 * 13 2 1 15 15 C 1.47480 * 110.99682 * 189.99846 * 14 13 2 16 16 C 1.53514 * 87.99767 * 138.67308 * 15 14 13 17 17 O 1.42900 * 114.16820 * 87.65095 * 16 15 14 18 18 C 1.50701 * 114.17001 * 220.35565 * 16 15 14 19 19 H 1.08001 * 119.99966 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99653 * 179.97438 * 18 16 15 21 21 N 1.31522 * 119.99637 * 180.02562 * 20 18 16 22 22 Si 1.86797 * 120.00188 * 0.02562 * 20 18 16 23 23 H 1.48501 * 109.47123 * 90.00009 * 22 20 18 24 24 H 1.48497 * 109.46955 * 209.99766 * 22 20 18 25 25 H 1.48490 * 109.47163 * 329.99833 * 22 20 18 26 26 C 1.47478 * 110.99989 * 285.96565 * 14 13 2 27 27 H 1.09004 * 109.47265 * 272.76739 * 1 2 3 28 28 H 1.08993 * 109.47623 * 32.77130 * 1 2 3 29 29 H 1.09002 * 109.46990 * 152.77463 * 1 2 3 30 30 H 1.08004 * 119.99964 * 187.32681 * 3 2 1 31 31 H 1.07994 * 120.07182 * 0.03182 * 5 4 3 32 32 H 1.08005 * 119.92427 * 180.21083 * 6 5 4 33 33 H 1.07996 * 119.85844 * 179.72007 * 7 6 5 34 34 H 1.08008 * 120.07060 * 179.97438 * 12 8 7 35 35 H 1.08996 * 109.47132 * 154.99974 * 13 2 1 36 36 H 1.09002 * 109.46840 * 34.99644 * 13 2 1 37 37 H 1.09000 * 113.47588 * 253.47034 * 15 14 13 38 38 H 1.09002 * 113.48100 * 23.87583 * 15 14 13 39 39 H 0.96703 * 114.00190 * 179.97438 * 17 16 15 40 40 H 0.96999 * 119.99556 * 180.02562 * 21 20 18 41 41 H 1.08994 * 113.47731 * 336.06946 * 26 14 13 42 42 H 1.09000 * 113.47180 * 106.47411 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 1.4397 2.4230 0.1630 5 6 1.7940 3.5360 -0.6005 6 6 1.1058 4.7217 -0.4466 7 6 0.0730 4.8117 0.4697 8 6 -0.2800 3.7134 1.2330 9 7 -1.3865 3.8183 2.2105 10 8 -1.6980 2.8523 2.8836 11 8 -1.9854 4.8707 2.3416 12 6 0.3973 2.5203 1.0852 13 6 2.2605 -1.3051 0.0006 14 7 2.4008 -1.7888 1.3805 15 6 3.3309 -2.9313 1.4480 16 6 3.9095 -2.3155 2.7297 17 8 3.2285 -2.7039 3.9244 18 6 5.4095 -2.4117 2.8379 19 1 5.9785 -2.8839 2.0507 20 6 6.0555 -1.8959 3.9413 21 7 7.3647 -1.9795 4.0355 22 14 5.0713 -1.0786 5.3025 23 1 4.6851 -2.0956 6.3132 24 1 5.8982 -0.0278 5.9486 25 1 3.8486 -0.4626 4.7278 26 6 3.4052 -0.9996 2.1177 27 1 -0.3634 0.0496 1.0265 28 1 -0.3634 0.8640 -0.5562 29 1 -0.3633 -0.9138 -0.4702 30 1 3.2432 1.1520 -0.1193 31 1 2.6027 3.4682 -1.3131 32 1 1.3768 5.5829 -1.0394 33 1 -0.4598 5.7434 0.5896 34 1 0.1210 1.6636 1.6821 35 1 3.2488 -1.1542 -0.4338 36 1 1.7132 -2.0409 -0.5885 37 1 2.8334 -3.8872 1.6118 38 1 4.0415 -2.9623 0.6220 39 1 3.5952 -2.3149 4.7303 40 1 7.8191 -1.6170 4.8120 41 1 4.1361 -0.5144 1.4710 42 1 2.9704 -0.3176 2.8484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354917006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:25 Heat of formation + Delta-G solvation = 23.388165 kcal Electronic energy + Delta-G solvation = -26442.221777 eV Core-core repulsion = 22585.057239 eV Total energy + Delta-G solvation = -3857.164539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31049 -41.38004 -40.58371 -37.77651 -37.57098 -36.12121 -34.56369 -33.18022 -32.37183 -30.15866 -28.61929 -27.63812 -27.54216 -26.84568 -24.44491 -23.62364 -22.88100 -20.92856 -20.50316 -19.81657 -19.41270 -18.87606 -18.66825 -18.18037 -17.53970 -16.99060 -16.65307 -16.39992 -15.83475 -15.71127 -15.35465 -15.09613 -14.91043 -14.56066 -14.30168 -14.06320 -13.78605 -13.64515 -13.32949 -13.14157 -12.88045 -12.83373 -12.80393 -12.64932 -12.44976 -12.37218 -12.31115 -12.14381 -11.93302 -11.80770 -11.21125 -11.04743 -10.88372 -10.52592 -10.42853 -9.81247 -9.41430 -8.47969 -6.56597 -1.28001 -0.30810 0.25366 0.33308 1.11139 1.17799 1.24629 1.31975 2.11593 2.35209 2.75644 3.09538 3.26372 3.43736 3.54571 3.67700 3.78710 3.82451 3.93046 3.99395 4.07718 4.15999 4.17585 4.39409 4.49276 4.58154 4.65638 4.67747 4.70124 4.78875 4.80679 4.90278 4.93696 5.02609 5.07707 5.08483 5.12308 5.26136 5.29769 5.45035 5.55191 5.72544 5.99220 6.18269 6.41275 6.48393 6.73499 7.11105 8.67766 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.003585 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.807934 B = 7808.783483 C = 8276.543103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.046 4.046 5 C -0.047 4.047 6 C -0.101 4.101 7 C -0.059 4.059 8 C -0.063 4.063 9 N 0.031 4.969 10 O -0.211 6.211 11 O -0.156 6.156 12 C -0.064 4.064 13 C 0.048 3.952 14 N -0.464 5.464 15 C 0.025 3.975 16 C 0.180 3.820 17 O -0.556 6.556 18 C -0.541 4.541 19 H 0.056 0.944 20 C 0.030 3.970 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.255 1.255 24 H -0.283 1.283 25 H -0.244 1.244 26 C -0.015 4.015 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.175 0.825 32 H 0.191 0.809 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.349 0.651 40 H 0.272 0.728 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 14.405 -13.536 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.162 4.162 4 C -0.047 4.047 5 C -0.065 4.065 6 C -0.119 4.119 7 C -0.078 4.078 8 C -0.146 4.146 9 N 0.545 4.455 10 O -0.416 6.416 11 O -0.376 6.376 12 C -0.083 4.083 13 C -0.079 4.079 14 N -0.186 5.186 15 C -0.103 4.103 16 C 0.139 3.861 17 O -0.367 6.367 18 C -0.579 4.579 19 H 0.074 0.926 20 C -0.170 4.170 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.181 1.181 24 H -0.209 1.209 25 H -0.168 1.168 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.193 0.807 32 H 0.208 0.792 33 H 0.186 0.814 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.201 0.799 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.514 13.914 -14.076 23.417 hybrid contribution 0.821 0.360 1.420 1.680 sum -11.693 14.274 -12.656 22.375 Atomic orbital electron populations 1.20985 0.91428 1.03031 1.01852 1.22031 0.96311 0.93783 0.96122 1.21516 0.99484 0.89999 1.05153 1.18990 0.94350 0.95615 0.95730 1.22222 0.98036 0.90667 0.95557 1.21629 0.93354 0.99701 0.97181 1.21488 0.96725 0.97131 0.92438 1.21219 0.94860 0.99529 0.98996 1.44016 1.01312 0.99742 1.00464 1.94581 1.71886 1.29785 1.45363 1.94464 1.53091 1.17642 1.72451 1.21352 0.93824 0.96010 0.97145 1.21778 0.99467 0.95142 0.91561 1.68966 1.33541 1.04676 1.11460 1.23877 0.93821 0.96380 0.96261 1.20294 0.89195 0.92877 0.83716 1.86460 1.59892 1.74245 1.16135 1.21497 0.90725 1.38882 1.06808 0.92590 1.25716 0.95709 0.95422 1.00194 1.69990 1.09232 1.46129 1.30946 0.86395 0.79547 0.79640 0.80438 1.18073 1.20926 1.16815 1.24674 0.93365 0.98189 0.98241 0.91992 0.91255 0.90571 0.84776 0.80730 0.79214 0.81374 0.84422 0.92622 0.88589 0.89988 0.89767 0.79911 0.91810 0.90615 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.31 71.23 0.59 -1.94 16 2 C -0.08 -1.93 5.23 -17.60 -0.09 -2.02 16 3 C -0.14 -3.03 8.99 23.65 0.21 -2.82 16 4 C -0.05 -0.86 4.99 -20.12 -0.10 -0.96 16 5 C -0.05 -0.54 9.79 22.52 0.22 -0.32 16 6 C -0.10 -0.88 10.03 22.23 0.22 -0.66 16 7 C -0.06 -0.85 9.55 22.32 0.21 -0.63 16 8 C -0.06 -1.41 6.84 36.34 0.25 -1.16 16 9 N 0.03 0.86 4.45 -46.56 -0.21 0.65 16 10 O -0.21 -6.86 18.44 18.90 0.35 -6.51 16 11 O -0.16 -4.26 18.44 18.89 0.35 -3.91 16 12 C -0.06 -1.48 7.38 22.52 0.17 -1.31 16 13 C 0.05 1.28 5.00 85.56 0.43 1.71 16 14 N -0.46 -16.43 6.40 -932.25 -5.97 -22.40 16 15 C 0.03 0.97 7.12 83.57 0.59 1.57 16 16 C 0.18 8.33 1.10 -11.16 -0.01 8.32 16 17 O -0.56 -26.96 13.32 -148.98 -1.98 -28.94 16 18 C -0.54 -29.26 9.27 25.60 0.24 -29.03 16 19 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 20 C 0.03 1.66 5.47 84.65 0.46 2.13 16 21 N -0.92 -54.14 13.96 21.45 0.30 -53.84 16 22 Si 0.91 41.22 24.41 68.60 1.67 42.90 16 23 H -0.25 -10.98 7.06 99.48 0.70 -10.28 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.24 -10.49 5.47 99.48 0.54 -9.95 16 26 C -0.02 -0.60 5.83 83.61 0.49 -0.12 16 27 H 0.06 1.55 6.67 -2.38 -0.02 1.53 16 28 H 0.07 1.34 6.70 -2.39 -0.02 1.33 16 29 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 30 H 0.13 2.72 7.99 -2.91 -0.02 2.70 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 33 H 0.17 1.81 7.60 -2.91 -0.02 1.79 16 34 H 0.14 3.70 5.46 -2.91 -0.02 3.69 16 35 H 0.06 1.44 7.40 -2.39 -0.02 1.42 16 36 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.08 3.04 7.72 -2.39 -0.02 3.03 16 39 H 0.35 16.25 3.17 -74.05 -0.24 16.01 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.08 2.92 7.66 -2.39 -0.02 2.90 16 42 H 0.06 2.48 7.13 -2.39 -0.02 2.47 16 Total: -1.00 -68.33 348.24 -0.96 -69.29 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.66 Total: 30.02 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.88 Total: -27.24 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -5.88 Total: -75.59 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.29 Total: -39.36 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.67 Total: 42.90 kcal Total: -68.33 -0.96 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354917006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.675 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds