Wall clock time and date at job start Tue Mar 31 2020 12:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47103 * 270.00390 * 3 2 1 5 5 H 1.48503 * 109.46876 * 30.00387 * 3 2 1 6 6 H 1.48495 * 109.46876 * 150.00244 * 3 2 1 7 7 C 1.37877 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00166 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99810 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99822 * 179.97438 * 11 10 9 14 14 O 1.42906 * 109.46847 * 180.02562 * 13 11 10 15 15 C 1.35904 * 116.99730 * 180.02562 * 14 13 11 16 16 C 1.38805 * 120.02123 * 0.02562 * 15 14 13 17 17 C 1.38167 * 120.08555 * 180.02562 * 16 15 14 18 18 C 1.38166 * 120.12314 * 359.67792 * 17 16 15 19 19 C 1.38894 * 120.03867 * 0.60516 * 18 17 16 20 20 N 1.39919 * 120.04349 * 179.69556 * 19 18 17 21 21 C 1.46766 * 124.35134 * 173.99944 * 20 19 18 22 22 C 1.54474 * 105.47197 * 162.98565 * 21 20 19 23 23 C 1.54618 * 101.76838 * 25.41322 * 22 21 20 24 24 C 1.34415 * 124.34759 * 353.99673 * 20 19 18 25 25 O 1.21290 * 124.94592 * 0.67819 * 24 20 19 26 26 C 1.38577 * 120.01730 * 179.97438 * 15 14 13 27 27 H 0.97003 * 120.00640 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47285 * 59.99609 * 9 7 2 29 29 H 1.09003 * 109.46725 * 300.00018 * 9 7 2 30 30 H 0.97001 * 119.99594 * 359.97438 * 10 9 7 31 31 H 1.08996 * 109.47211 * 59.99965 * 13 11 10 32 32 H 1.08997 * 109.46966 * 299.99277 * 13 11 10 33 33 H 1.08004 * 119.95781 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94038 * 180.02562 * 17 16 15 35 35 H 1.07993 * 119.98226 * 180.29500 * 18 17 16 36 36 H 1.09000 * 110.24106 * 43.97923 * 21 20 19 37 37 H 1.09005 * 110.31606 * 282.02234 * 21 20 19 38 38 H 1.09006 * 110.96388 * 267.29180 * 22 21 20 39 39 H 1.08997 * 110.99926 * 143.54952 * 22 21 20 40 40 H 1.08999 * 110.48817 * 216.52208 * 23 22 21 41 41 H 1.09001 * 110.48871 * 93.88298 * 23 22 21 42 42 H 1.08006 * 120.06099 * 0.03633 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0029 12 8 0.5616 -5.1049 -0.0039 13 6 2.7334 -6.0287 -0.0032 14 8 2.0189 -7.2663 -0.0054 15 6 2.7591 -8.4060 -0.0055 16 6 4.1453 -8.3338 -0.0029 17 6 4.8992 -9.4917 -0.0035 18 6 4.2761 -10.7248 0.0001 19 6 2.8894 -10.8031 -0.0084 20 7 2.2583 -12.0519 -0.0112 21 6 0.8085 -12.2474 0.1067 22 6 0.5468 -13.6915 -0.3753 23 6 1.9093 -14.3681 -0.0985 24 6 2.9019 -13.2267 -0.1222 25 8 4.1041 -13.3536 -0.2216 26 6 2.1305 -9.6410 -0.0070 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8880 30 1 3.1568 -3.4353 -0.0010 31 1 3.3594 -5.9717 0.8872 32 1 3.3605 -5.9702 -0.8928 33 1 4.6352 -7.3713 -0.0013 34 1 5.9776 -9.4327 -0.0010 35 1 4.8676 -11.6284 0.0045 36 1 0.2793 -11.5362 -0.5275 37 1 0.4943 -12.1333 1.1442 38 1 0.3107 -13.7107 -1.4393 39 1 -0.2468 -14.1598 0.2068 40 1 2.1415 -15.0919 -0.8797 41 1 1.9046 -14.8493 0.8795 42 1 1.0520 -9.6991 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355360291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:50 Heat of formation + Delta-G solvation = -75.552229 kcal Electronic energy + Delta-G solvation = -25035.240041 eV Core-core repulsion = 21173.785125 eV Total energy + Delta-G solvation = -3861.454916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43474 -40.09495 -38.68954 -37.31443 -36.83560 -34.27147 -33.29683 -32.43152 -30.92575 -29.11113 -28.77988 -28.09408 -26.59195 -23.70906 -23.17736 -22.42230 -21.62925 -20.24327 -19.78255 -18.45974 -17.51922 -17.21661 -16.63423 -16.51751 -16.20357 -16.03293 -15.45008 -15.09713 -14.83548 -14.43479 -14.28937 -14.21032 -14.11366 -13.92593 -13.83930 -13.24080 -13.06914 -12.71094 -12.60200 -12.15935 -12.01998 -12.00506 -11.89910 -11.61134 -11.20018 -11.14531 -11.02015 -10.90984 -10.36015 -10.33677 -10.01504 -9.45905 -9.17243 -8.79995 -8.57695 -8.08489 -8.00083 -6.21208 -4.28835 1.00062 1.32206 2.20539 2.31988 2.92069 3.16939 3.21693 3.28094 3.30361 3.65142 3.76045 3.89935 4.14803 4.27189 4.34084 4.44313 4.65352 4.90778 4.92395 4.95344 5.01391 5.12955 5.14605 5.15569 5.18444 5.20101 5.28644 5.34202 5.36353 5.41559 5.45961 5.96498 6.06377 6.17504 6.36265 6.69793 6.74173 7.19106 7.26322 7.36377 7.44276 7.59767 7.63128 7.90334 8.48650 8.69875 8.95593 9.37642 10.88884 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035051 B = 0.001964 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.645173 B =14254.825482 C =15009.069059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.040 3.960 14 O -0.285 6.285 15 C 0.162 3.838 16 C -0.234 4.234 17 C -0.051 4.051 18 C -0.197 4.197 19 C 0.199 3.801 20 N -0.557 5.557 21 C 0.091 3.909 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.516 3.484 25 O -0.510 6.510 26 C -0.191 4.191 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -27.365 0.208 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.038 4.038 14 O -0.197 6.197 15 C 0.115 3.885 16 C -0.253 4.253 17 C -0.070 4.070 18 C -0.218 4.218 19 C 0.106 3.894 20 N -0.281 5.281 21 C -0.032 4.032 22 C -0.169 4.169 23 C -0.193 4.193 24 C 0.305 3.695 25 O -0.385 6.385 26 C -0.212 4.212 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.225 0.775 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.085 -27.431 0.159 27.899 hybrid contribution 1.015 1.263 0.011 1.621 sum 6.100 -26.168 0.170 26.870 Atomic orbital electron populations 1.69968 1.06123 1.27425 1.48626 1.24958 0.94939 0.99507 0.94614 0.86389 0.79593 0.82520 0.78248 1.20428 1.20967 1.19727 1.21203 0.93311 0.90304 1.53564 0.91773 1.19170 0.88181 0.81553 0.98011 1.46354 1.11433 1.05388 1.72576 1.19875 0.89132 0.83951 0.78732 1.90709 1.16417 1.84527 1.49400 1.22654 0.95058 0.82694 1.03440 1.86177 1.34115 1.11587 1.87816 1.18680 0.89781 0.86182 0.93880 1.21306 0.92614 1.00070 1.11354 1.20814 0.99778 0.91082 0.95303 1.21479 0.92572 1.00080 1.07620 1.17356 0.91536 0.82981 0.97561 1.45791 1.08843 1.04676 1.68742 1.22341 0.79301 0.98388 1.03122 1.22630 0.97155 0.93731 1.03381 1.22349 0.94158 0.97091 1.05670 1.21118 0.88723 0.84634 0.74991 1.90639 1.14331 1.85198 1.48374 1.19826 1.00300 0.88466 1.12641 0.92356 0.95290 0.95282 0.77508 0.89249 0.89260 0.85094 0.85267 0.82874 0.89041 0.89727 0.89478 0.88437 0.87435 0.87225 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.38 5.55 -61.47 -0.34 -14.73 16 11 C 0.50 9.94 7.91 -10.99 -0.09 9.85 16 12 O -0.53 -13.18 16.50 -14.35 -0.24 -13.42 16 13 C 0.04 0.58 5.22 36.01 0.19 0.77 16 14 O -0.29 -4.60 9.67 -39.35 -0.38 -4.98 16 15 C 0.16 2.21 6.68 -39.25 -0.26 1.95 16 16 C -0.23 -2.73 9.04 -39.40 -0.36 -3.08 16 17 C -0.05 -0.56 10.03 -39.63 -0.40 -0.96 16 18 C -0.20 -2.41 9.29 -39.37 -0.37 -2.78 16 19 C 0.20 2.38 6.59 -83.72 -0.55 1.83 16 20 N -0.56 -5.33 3.14 -112.28 -0.35 -5.69 16 21 C 0.09 0.53 6.50 -3.12 -0.02 0.51 16 22 C -0.13 -0.43 7.18 -25.11 -0.18 -0.61 16 23 C -0.15 -0.74 6.86 -26.75 -0.18 -0.92 16 24 C 0.52 5.01 7.92 -10.86 -0.09 4.92 16 25 O -0.51 -6.70 14.81 5.55 0.08 -6.62 16 26 C -0.19 -2.40 9.35 -39.25 -0.37 -2.76 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 31 H 0.09 1.03 7.66 -51.93 -0.40 0.64 16 32 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 33 H 0.13 1.26 6.29 -52.48 -0.33 0.93 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.99 5.25 -52.49 -0.28 1.71 16 36 H 0.09 0.51 7.24 -51.93 -0.38 0.13 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.14 1.54 6.74 -52.48 -0.35 1.19 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -35.77 356.66 -8.64 -44.41 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.39 Total: 3.09 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.11 Total: 2.04 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.04 Total: -45.41 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.53 Total: -25.02 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.77 -8.64 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355360291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.145 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds