Wall clock time and date at job start Tue Mar 31 2020 12:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47103 * 270.00390 * 3 2 1 5 5 H 1.48503 * 109.46876 * 30.00387 * 3 2 1 6 6 H 1.48495 * 109.46876 * 150.00244 * 3 2 1 7 7 C 1.37877 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00166 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99810 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99822 * 179.97438 * 11 10 9 14 14 O 1.42906 * 109.46847 * 180.02562 * 13 11 10 15 15 C 1.35904 * 116.99730 * 180.02562 * 14 13 11 16 16 C 1.38805 * 120.02123 * 0.02562 * 15 14 13 17 17 C 1.38167 * 120.08555 * 180.02562 * 16 15 14 18 18 C 1.38166 * 120.12314 * 359.67792 * 17 16 15 19 19 C 1.38894 * 120.03867 * 0.60516 * 18 17 16 20 20 N 1.39919 * 120.04349 * 179.69556 * 19 18 17 21 21 C 1.46766 * 124.35134 * 173.99944 * 20 19 18 22 22 C 1.54474 * 105.47197 * 162.98565 * 21 20 19 23 23 C 1.54618 * 101.76838 * 25.41322 * 22 21 20 24 24 C 1.34415 * 124.34759 * 353.99673 * 20 19 18 25 25 O 1.21290 * 124.94592 * 0.67819 * 24 20 19 26 26 C 1.38577 * 120.01730 * 179.97438 * 15 14 13 27 27 H 0.97003 * 120.00640 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47285 * 59.99609 * 9 7 2 29 29 H 1.09003 * 109.46725 * 300.00018 * 9 7 2 30 30 H 0.97001 * 119.99594 * 359.97438 * 10 9 7 31 31 H 1.08996 * 109.47211 * 59.99965 * 13 11 10 32 32 H 1.08997 * 109.46966 * 299.99277 * 13 11 10 33 33 H 1.08004 * 119.95781 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.94038 * 180.02562 * 17 16 15 35 35 H 1.07993 * 119.98226 * 180.29500 * 18 17 16 36 36 H 1.09000 * 110.24106 * 43.97923 * 21 20 19 37 37 H 1.09005 * 110.31606 * 282.02234 * 21 20 19 38 38 H 1.09006 * 110.96388 * 267.29180 * 22 21 20 39 39 H 1.08997 * 110.99926 * 143.54952 * 22 21 20 40 40 H 1.08999 * 110.48817 * 216.52208 * 23 22 21 41 41 H 1.09001 * 110.48871 * 93.88298 * 23 22 21 42 42 H 1.08006 * 120.06099 * 0.03633 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0029 12 8 0.5616 -5.1049 -0.0039 13 6 2.7334 -6.0287 -0.0032 14 8 2.0189 -7.2663 -0.0054 15 6 2.7591 -8.4060 -0.0055 16 6 4.1453 -8.3338 -0.0029 17 6 4.8992 -9.4917 -0.0035 18 6 4.2761 -10.7248 0.0001 19 6 2.8894 -10.8031 -0.0084 20 7 2.2583 -12.0519 -0.0112 21 6 0.8085 -12.2474 0.1067 22 6 0.5468 -13.6915 -0.3753 23 6 1.9093 -14.3681 -0.0985 24 6 2.9019 -13.2267 -0.1222 25 8 4.1041 -13.3536 -0.2216 26 6 2.1305 -9.6410 -0.0070 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8880 30 1 3.1568 -3.4353 -0.0010 31 1 3.3594 -5.9717 0.8872 32 1 3.3605 -5.9702 -0.8928 33 1 4.6352 -7.3713 -0.0013 34 1 5.9776 -9.4327 -0.0010 35 1 4.8676 -11.6284 0.0045 36 1 0.2793 -11.5362 -0.5275 37 1 0.4943 -12.1333 1.1442 38 1 0.3107 -13.7107 -1.4393 39 1 -0.2468 -14.1598 0.2068 40 1 2.1415 -15.0919 -0.8797 41 1 1.9046 -14.8493 0.8795 42 1 1.0520 -9.6991 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355360291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:49 Heat of formation + Delta-G solvation = -100.077666 kcal Electronic energy + Delta-G solvation = -25036.303544 eV Core-core repulsion = 21173.785125 eV Total energy + Delta-G solvation = -3862.518419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16704 -41.22863 -40.14172 -38.33933 -37.59077 -36.18941 -34.41520 -33.93516 -31.94643 -30.33821 -29.83592 -28.68662 -28.24315 -24.85876 -24.29253 -23.70703 -22.27312 -21.62960 -20.89008 -19.35313 -19.12297 -17.88777 -17.74029 -17.55291 -17.43369 -17.29588 -16.82279 -16.61841 -16.00416 -15.75061 -15.56294 -15.15428 -14.87411 -14.67772 -14.62499 -14.49565 -14.07912 -14.04030 -13.84676 -13.58958 -13.40462 -12.96487 -12.91249 -12.72128 -12.42284 -12.30964 -12.23471 -12.05173 -11.92167 -11.49903 -11.08503 -10.86865 -10.81813 -10.78414 -9.92607 -9.50953 -8.96257 -8.29541 -6.46362 0.13257 0.37098 1.42878 1.46563 1.46639 1.50252 1.58155 1.58845 1.86239 2.37556 2.75118 2.82733 3.05708 3.26284 3.52262 3.66252 3.86157 3.95497 4.00456 4.06100 4.12544 4.15109 4.21761 4.33135 4.43618 4.55309 4.59330 4.69142 4.83411 5.05430 5.08099 5.10998 5.15162 5.21387 5.25183 5.29898 5.42790 5.47098 5.62756 5.81634 5.82741 6.01662 6.31551 6.63373 6.80615 6.89834 7.21542 7.38804 8.82600 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035051 B = 0.001964 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.645173 B =14254.825482 C =15009.069059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.497 3.503 12 O -0.590 6.590 13 C 0.053 3.947 14 O -0.316 6.316 15 C 0.142 3.858 16 C -0.232 4.232 17 C -0.048 4.048 18 C -0.212 4.212 19 C 0.192 3.808 20 N -0.563 5.563 21 C 0.080 3.920 22 C -0.117 4.117 23 C -0.143 4.143 24 C 0.502 3.498 25 O -0.553 6.553 26 C -0.201 4.201 27 H 0.269 0.731 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.414 0.586 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.774 -27.992 0.313 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.283 3.717 12 O -0.471 6.471 13 C -0.025 4.025 14 O -0.229 6.229 15 C 0.096 3.904 16 C -0.251 4.251 17 C -0.066 4.066 18 C -0.232 4.232 19 C 0.097 3.903 20 N -0.285 5.285 21 C -0.041 4.041 22 C -0.155 4.155 23 C -0.182 4.182 24 C 0.293 3.707 25 O -0.432 6.432 26 C -0.222 4.222 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.250 0.750 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.162 -28.096 0.266 28.996 hybrid contribution 0.345 1.349 -0.018 1.393 sum 7.507 -26.747 0.247 27.782 Atomic orbital electron populations 1.70134 1.08305 1.28612 1.49886 1.26081 0.95782 1.03973 0.93877 0.85136 0.78507 0.76885 0.78556 1.19669 1.21135 1.17761 1.21619 0.94487 0.90306 1.52947 0.89381 1.18607 0.88654 0.83997 0.94397 1.46010 1.11680 1.04675 1.72592 1.20877 0.89409 0.84892 0.76551 1.90682 1.19409 1.85403 1.51626 1.22603 0.92997 0.80020 1.06875 1.86115 1.35656 1.12524 1.88618 1.18891 0.90705 0.85472 0.95290 1.21544 0.91669 1.01378 1.10516 1.21125 1.01161 0.90318 0.93993 1.21604 0.92882 1.00462 1.08290 1.17513 0.91707 0.83950 0.97092 1.46102 1.10405 1.03966 1.68045 1.22647 0.77192 1.00286 1.03964 1.22676 0.96989 0.91556 1.04249 1.22422 0.93224 0.95409 1.07194 1.22094 0.88941 0.85823 0.73795 1.90604 1.16389 1.85915 1.50267 1.19934 1.00614 0.88635 1.13062 0.92239 0.99228 0.99201 0.74968 0.85563 0.85616 0.82548 0.82590 0.83857 0.89142 0.88751 0.88883 0.85513 0.86191 0.85328 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.56 -29.46 9.28 25.60 0.24 -29.23 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.33 5.43 85.63 0.46 14.80 16 10 N -0.70 -28.23 5.55 -466.78 -2.59 -30.82 16 11 C 0.50 19.73 7.91 87.66 0.69 20.42 16 12 O -0.59 -30.36 16.50 16.01 0.26 -30.09 16 13 C 0.05 1.40 5.22 71.24 0.37 1.77 16 14 O -0.32 -9.98 9.67 -73.43 -0.71 -10.69 16 15 C 0.14 3.76 6.68 22.49 0.15 3.91 16 16 C -0.23 -4.86 9.04 22.39 0.20 -4.66 16 17 C -0.05 -0.96 10.03 22.24 0.22 -0.74 16 18 C -0.21 -5.14 9.29 22.41 0.21 -4.93 16 19 C 0.19 4.59 6.59 38.14 0.25 4.84 16 20 N -0.56 -10.61 3.14 -627.74 -1.97 -12.58 16 21 C 0.08 0.84 6.50 86.83 0.56 1.41 16 22 C -0.12 -0.47 7.18 31.65 0.23 -0.25 16 23 C -0.14 -1.09 6.86 30.58 0.21 -0.88 16 24 C 0.50 9.57 7.92 87.90 0.70 10.27 16 25 O -0.55 -14.85 14.81 -3.06 -0.05 -14.90 16 26 C -0.20 -5.06 9.35 22.48 0.21 -4.85 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.41 13.01 8.32 -92.71 -0.77 12.23 16 31 H 0.13 2.45 7.66 -2.39 -0.02 2.43 16 32 H 0.13 2.45 7.66 -2.39 -0.02 2.44 16 33 H 0.16 2.37 6.29 -2.91 -0.02 2.35 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.14 3.81 5.25 -2.91 -0.02 3.79 16 36 H 0.09 0.96 7.24 -2.39 -0.02 0.95 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.14 3.22 6.74 -2.91 -0.02 3.20 16 Total: -1.00 -83.17 356.66 2.72 -80.45 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.29 Total: 17.89 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.17 Total: 12.50 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -4.27 Total: -98.72 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -0.49 Total: -55.68 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -83.17 2.72 -80.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355360291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.630 kcal (2) G-P(sol) polarization free energy of solvation -83.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds