Wall clock time and date at job start Tue Mar 31 2020 11:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47254 * 269.99824 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00050 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99818 * 3 2 1 7 7 C 1.37885 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99740 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99423 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00377 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99510 * 179.97438 * 11 10 9 14 14 O 1.42910 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.35965 * 116.99928 * 180.02562 * 14 13 11 16 16 C 1.38726 * 119.98334 * 180.02562 * 15 14 13 17 17 C 1.38086 * 120.01365 * 180.02562 * 16 15 14 18 18 C 1.38844 * 119.98585 * 359.97438 * 17 16 15 19 19 N 1.40115 * 120.01379 * 180.02562 * 18 17 16 20 20 C 1.46763 * 124.34925 * 354.19505 * 19 18 17 21 21 C 1.54474 * 105.47359 * 197.01610 * 20 19 18 22 22 C 1.54627 * 101.76694 * 334.58429 * 21 20 19 23 23 C 1.34413 * 124.34862 * 173.89307 * 19 18 17 24 24 O 1.21297 * 124.94653 * 359.58049 * 23 19 18 25 25 C 1.38844 * 119.97411 * 0.27374 * 18 17 16 26 26 C 1.38093 * 119.97932 * 359.47314 * 25 18 17 27 27 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47506 * 60.00006 * 9 7 2 29 29 H 1.08999 * 109.47080 * 299.99852 * 9 7 2 30 30 H 0.96995 * 120.00529 * 359.97438 * 10 9 7 31 31 H 1.09003 * 109.47539 * 59.99858 * 13 11 10 32 32 H 1.08999 * 109.47353 * 299.99767 * 13 11 10 33 33 H 1.07999 * 119.99305 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.00766 * 179.97438 * 17 16 15 35 35 H 1.08996 * 110.24896 * 316.01822 * 20 19 18 36 36 H 1.09008 * 110.24564 * 77.92562 * 20 19 18 37 37 H 1.09005 * 110.97191 * 92.70371 * 21 20 19 38 38 H 1.09007 * 110.96913 * 216.46671 * 21 20 19 39 39 H 1.09000 * 110.48590 * 143.47269 * 22 21 20 40 40 H 1.08998 * 110.48595 * 265.98574 * 22 21 20 41 41 H 1.07992 * 120.00938 * 179.72193 * 25 18 17 42 42 H 1.08001 * 119.99137 * 180.22707 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7535 -4.8834 0.0015 12 8 0.5612 -5.1050 0.0006 13 6 2.7328 -6.0288 0.0022 14 8 2.0183 -7.2664 0.0023 15 6 2.7588 -8.4067 0.0034 16 6 2.1287 -9.6426 0.0031 17 6 2.8802 -10.8011 0.0048 18 6 4.2667 -10.7288 0.0063 19 7 5.0298 -11.9039 0.0075 20 6 4.4696 -13.2549 0.1298 21 6 5.6592 -14.1607 0.5179 22 6 6.8580 -13.3695 -0.0547 23 6 6.3684 -11.9391 -0.1091 24 8 7.0805 -10.9654 -0.2365 25 6 4.8968 -9.4916 0.0118 26 6 4.1441 -8.3338 0.0049 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5572 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 3.1565 -3.4355 0.0021 31 1 3.3590 -5.9711 0.8926 32 1 3.3601 -5.9711 -0.8874 33 1 1.0502 -9.6987 0.0015 34 1 2.3895 -11.7632 0.0049 35 1 3.7078 -13.2783 0.9089 36 1 4.0450 -13.5748 -0.8219 37 1 5.7379 -14.2587 1.6007 38 1 5.5754 -15.1389 0.0443 39 1 7.7216 -13.4553 0.6048 40 1 7.1063 -13.7242 -1.0550 41 1 5.9752 -9.4347 0.0176 42 1 4.6341 -7.3714 0.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356298353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:13 Heat of formation + Delta-G solvation = -100.535240 kcal Electronic energy + Delta-G solvation = -24915.713428 eV Core-core repulsion = 21053.175167 eV Total energy + Delta-G solvation = -3862.538261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09041 -41.20629 -40.14801 -38.35801 -37.47900 -36.20269 -34.42864 -33.69017 -32.17983 -30.84623 -29.39227 -28.60900 -28.15031 -24.87300 -24.20969 -23.78074 -22.26079 -21.46956 -20.81946 -19.44015 -19.05267 -18.56252 -17.80880 -17.60293 -17.40735 -17.08256 -16.86695 -16.23144 -15.74846 -15.71525 -15.51352 -15.00523 -14.81082 -14.72934 -14.52077 -14.36276 -14.24563 -14.05544 -14.02831 -13.57986 -13.41568 -13.12511 -12.95313 -12.73135 -12.39973 -12.30822 -12.24999 -12.12667 -11.82417 -11.51193 -10.90171 -10.82972 -10.74193 -10.69039 -10.09501 -9.93892 -8.62064 -8.30623 -6.47550 0.20127 0.27245 1.42890 1.45574 1.51313 1.56157 1.56722 1.65048 1.83951 2.36648 2.74264 2.82894 3.04488 3.29586 3.57346 3.66049 3.83960 3.92063 4.00512 4.03687 4.08977 4.11453 4.18219 4.36883 4.52055 4.60313 4.63855 4.84040 4.87154 5.01914 5.06908 5.10105 5.15184 5.19986 5.20669 5.32427 5.41114 5.42155 5.61429 5.80675 5.82933 6.08091 6.33024 6.61791 6.78726 6.98192 7.19949 7.36534 8.81593 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033150 B = 0.001915 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.432314 B =14618.295054 C =15410.725867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.498 3.502 12 O -0.589 6.589 13 C 0.053 3.947 14 O -0.317 6.317 15 C 0.089 3.911 16 C -0.130 4.130 17 C -0.103 4.103 18 C 0.115 3.885 19 N -0.559 5.559 20 C 0.083 3.917 21 C -0.118 4.118 22 C -0.146 4.146 23 C 0.495 3.505 24 O -0.564 6.564 25 C -0.132 4.132 26 C -0.182 4.182 27 H 0.269 0.731 28 H -0.010 1.010 29 H -0.009 1.009 30 H 0.413 0.587 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.899 -32.937 0.727 36.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.470 6.470 13 C -0.025 4.025 14 O -0.230 6.230 15 C 0.043 3.957 16 C -0.149 4.149 17 C -0.123 4.123 18 C 0.021 3.979 19 N -0.283 5.283 20 C -0.038 4.038 21 C -0.155 4.155 22 C -0.186 4.186 23 C 0.287 3.713 24 O -0.443 6.443 25 C -0.152 4.152 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.249 0.751 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.062 -32.469 0.671 35.390 hybrid contribution 0.319 1.595 -0.062 1.628 sum 14.381 -30.874 0.608 34.065 Atomic orbital electron populations 1.70138 1.08294 1.28632 1.49805 1.26082 0.95795 1.03957 0.93812 0.85127 0.78469 0.76851 0.78580 1.19628 1.20990 1.17867 1.21616 0.94449 0.90349 1.53091 0.89499 1.18618 0.88643 0.83959 0.94446 1.46026 1.11659 1.04718 1.72613 1.20843 0.89382 0.84852 0.76551 1.90676 1.19306 1.85392 1.51585 1.22535 0.93047 0.80587 1.06356 1.86139 1.35340 1.12390 1.89180 1.19327 0.90434 0.86469 0.99466 1.20503 1.01309 0.88924 1.04182 1.20795 0.90450 0.99228 1.01820 1.17861 0.91232 0.85592 1.03189 1.46057 1.07227 1.06788 1.68226 1.22671 0.98539 0.78113 1.04431 1.22677 0.90378 0.99274 1.03194 1.22404 1.01117 0.88956 1.06073 1.22100 0.81595 0.93424 0.74195 1.90614 1.60689 1.42304 1.50715 1.21399 1.01814 0.90794 1.01226 1.21331 0.92009 1.00288 1.06527 0.92203 0.99164 0.99134 0.75067 0.86120 0.86177 0.83871 0.81540 0.88095 0.88370 0.88938 0.85553 0.86761 0.85771 0.83921 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.35 29.54 68.60 2.03 44.37 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.56 -30.24 9.28 25.60 0.24 -30.01 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 14.68 5.43 85.63 0.46 15.15 16 10 N -0.70 -29.52 5.55 -466.78 -2.59 -32.11 16 11 C 0.50 20.73 7.91 87.66 0.69 21.42 16 12 O -0.59 -31.19 16.50 16.01 0.26 -30.92 16 13 C 0.05 1.53 5.22 71.24 0.37 1.91 16 14 O -0.32 -10.54 9.67 -74.12 -0.72 -11.25 16 15 C 0.09 2.42 6.69 22.50 0.15 2.57 16 16 C -0.13 -2.98 9.98 22.35 0.22 -2.76 16 17 C -0.10 -1.81 9.40 22.38 0.21 -1.60 16 18 C 0.11 2.38 6.60 38.11 0.25 2.63 16 19 N -0.56 -8.60 3.14 -627.55 -1.97 -10.57 16 20 C 0.08 0.39 6.26 86.83 0.54 0.94 16 21 C -0.12 -0.06 7.18 31.65 0.23 0.17 16 22 C -0.15 -0.91 6.86 30.59 0.21 -0.70 16 23 C 0.50 8.84 7.92 87.90 0.70 9.53 16 24 O -0.56 -15.31 14.83 -3.08 -0.05 -15.36 16 25 C -0.13 -3.29 9.28 22.38 0.21 -3.08 16 26 C -0.18 -4.48 9.03 22.35 0.20 -4.27 16 27 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.41 13.86 8.32 -92.71 -0.77 13.08 16 31 H 0.12 2.73 7.66 -2.39 -0.02 2.71 16 32 H 0.12 2.73 7.66 -2.39 -0.02 2.71 16 33 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.17 1.62 7.01 -2.91 -0.02 1.60 16 35 H 0.10 0.24 7.70 -2.39 -0.02 0.23 16 36 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.13 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.14 3.96 5.27 -2.91 -0.02 3.94 16 42 H 0.15 3.02 6.29 -2.91 -0.02 3.00 16 Total: -1.00 -85.32 357.19 2.69 -82.63 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.29 Total: 16.71 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.15 Total: 12.54 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -4.28 Total: -98.71 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.50 Total: -57.53 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -85.32 2.69 -82.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356298353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.905 kcal (2) G-P(sol) polarization free energy of solvation -85.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds