Wall clock time and date at job start Tue Mar 31 2020 13:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 120.00051 * 2 1 4 4 C 1.47173 * 120.00221 * 179.97438 * 2 1 3 5 5 C 1.40053 * 120.51711 * 353.91515 * 4 2 1 6 6 C 1.39659 * 118.13345 * 179.97438 * 5 4 2 7 7 C 1.47867 * 120.47411 * 180.02562 * 6 5 4 8 8 O 1.21550 * 119.99723 * 138.78434 * 7 6 5 9 9 N 1.34770 * 119.99959 * 318.77547 * 7 6 5 10 10 C 1.47070 * 136.05685 * 4.85702 * 9 7 6 11 11 C 1.53759 * 87.88724 * 152.95834 * 10 9 7 12 12 O 1.42897 * 114.39156 * 272.67086 * 11 10 9 13 13 C 1.50699 * 114.26901 * 139.79034 * 11 10 9 14 14 H 1.08000 * 120.00105 * 266.47966 * 13 11 10 15 15 C 1.37881 * 120.00016 * 86.46803 * 13 11 10 16 16 N 1.31517 * 120.00112 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99911 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46941 * 60.00622 * 17 15 13 19 19 H 1.48504 * 109.47153 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47420 * 300.00626 * 17 15 13 21 21 C 1.47067 * 136.05835 * 185.21449 * 9 7 6 22 22 C 1.39708 * 119.04624 * 359.97438 * 6 5 4 23 23 C 1.50707 * 119.52718 * 179.72469 * 22 6 5 24 24 N 1.31747 * 120.94496 * 0.02562 * 22 6 5 25 25 C 1.31710 * 122.07317 * 0.02562 * 24 22 6 26 26 C 1.50701 * 119.58231 * 179.97438 * 25 24 22 27 27 H 1.09002 * 109.47534 * 270.00582 * 1 2 3 28 28 H 1.09010 * 109.47159 * 30.00101 * 1 2 3 29 29 H 1.09003 * 109.47184 * 149.99769 * 1 2 3 30 30 H 1.08005 * 120.93110 * 359.95024 * 5 4 2 31 31 H 1.09005 * 113.46427 * 267.68875 * 10 9 7 32 32 H 1.08998 * 113.47206 * 38.12755 * 10 9 7 33 33 H 0.96695 * 114.00472 * 273.58858 * 12 11 10 34 34 H 0.96994 * 119.99820 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.46811 * 321.87277 * 21 9 7 36 36 H 1.09003 * 113.46416 * 92.25110 * 21 9 7 37 37 H 1.08996 * 109.47128 * 86.73766 * 23 22 6 38 38 H 1.08998 * 109.46926 * 206.73663 * 23 22 6 39 39 H 1.09006 * 109.47221 * 326.73515 * 23 22 6 40 40 H 1.09003 * 109.47064 * 262.57218 * 26 25 24 41 41 H 1.08995 * 109.47277 * 22.57767 * 26 25 24 42 42 H 1.08999 * 109.47372 * 142.57801 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5595 -2.4903 0.1290 6 6 2.3072 -3.6698 0.1228 7 6 1.6387 -4.9822 0.2545 8 8 2.0029 -5.9207 -0.4267 9 7 0.6258 -5.1376 1.1298 10 6 -0.1369 -4.2627 2.0330 11 6 -1.3135 -5.2431 1.8967 12 8 -2.1727 -4.9829 0.7850 13 6 -2.0609 -5.4961 3.1807 14 1 -1.7925 -6.3352 3.8054 15 6 -3.0871 -4.6561 3.5580 16 7 -3.4141 -3.6344 2.7972 17 14 -4.0140 -4.9701 5.1492 18 1 -3.0675 -4.9160 6.2923 19 1 -5.0622 -3.9329 5.3244 20 1 -4.6493 -6.3113 5.0957 21 6 -0.1990 -6.2579 1.6068 22 6 3.6958 -3.5921 -0.0106 23 6 4.5138 -4.8578 -0.0124 24 7 4.3008 -2.4278 -0.1290 25 6 3.6361 -1.2907 -0.1273 26 6 4.3854 0.0094 -0.2658 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 0.4845 -2.5148 0.2304 31 1 0.2743 -4.2157 3.0414 32 1 -0.3402 -3.2774 1.6138 33 1 -2.8737 -4.3433 0.9708 34 1 -4.1363 -3.0438 3.0624 35 1 -0.4551 -6.9723 0.8245 36 1 0.1964 -6.7375 2.5023 37 1 4.5675 -5.2543 -1.0262 38 1 5.5198 -4.6407 0.3466 39 1 4.0457 -5.5939 0.6413 40 1 4.5458 0.4433 0.7212 41 1 5.3481 -0.1751 -0.7425 42 1 3.8043 0.7005 -0.8763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356583799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:57 Heat of formation + Delta-G solvation = -45.808347 kcal Electronic energy + Delta-G solvation = -27121.971400 eV Core-core repulsion = 23261.806275 eV Total energy + Delta-G solvation = -3860.165125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04122 -39.68965 -38.82520 -37.42133 -34.23785 -33.50742 -33.45610 -32.30810 -30.43492 -29.10115 -28.89940 -27.14951 -25.42358 -25.25416 -23.21954 -22.55392 -21.03096 -19.86297 -18.58013 -17.66832 -17.11973 -16.74376 -16.03086 -15.57277 -15.46697 -15.38219 -15.04958 -14.75624 -14.42781 -14.30149 -14.11014 -13.56677 -13.28311 -13.15622 -12.81835 -12.59470 -12.57797 -12.25713 -12.17528 -12.13434 -12.04759 -11.98659 -11.87739 -11.66355 -11.13991 -11.12823 -10.60586 -10.45950 -10.35818 -9.95014 -9.73213 -9.43047 -9.30172 -8.95306 -8.89094 -8.53025 -8.01862 -6.52077 -4.62158 0.33993 0.86461 2.20680 2.99249 3.09193 3.15741 3.17056 3.29473 3.68218 3.84457 4.09030 4.10262 4.49791 4.52452 4.63073 4.73381 4.94149 5.12578 5.18216 5.37690 5.42147 5.48131 5.49275 5.57314 5.62572 5.67101 5.71803 5.75880 5.87066 5.93740 6.03400 6.08087 6.10892 6.24486 6.34543 6.42031 6.48397 6.53323 6.96280 7.36518 7.51740 7.67295 7.75533 8.26305 8.41316 8.52131 9.09517 9.35147 10.54830 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.004378 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.404008 B = 6393.366234 C = 7839.017478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.406 3.594 3 O -0.456 6.456 4 C -0.243 4.243 5 C 0.011 3.989 6 C -0.188 4.188 7 C 0.585 3.415 8 O -0.547 6.547 9 N -0.628 5.628 10 C 0.067 3.933 11 C 0.243 3.757 12 O -0.570 6.570 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.108 3.892 22 C 0.212 3.788 23 C -0.105 4.105 24 N -0.498 5.498 25 C 0.203 3.797 26 C -0.110 4.110 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.275 0.725 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 5.578 -2.614 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.285 3.715 3 O -0.333 6.333 4 C -0.246 4.246 5 C -0.015 4.015 6 C -0.193 4.193 7 C 0.373 3.627 8 O -0.427 6.427 9 N -0.360 5.360 10 C -0.056 4.056 11 C 0.201 3.799 12 O -0.383 6.383 13 C -0.573 4.573 14 H 0.091 0.909 15 C -0.128 4.128 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.014 4.014 22 C 0.073 3.927 23 C -0.162 4.162 24 N -0.208 5.208 25 C 0.065 3.935 26 C -0.166 4.166 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.060 5.407 -3.508 11.948 hybrid contribution -1.866 0.254 1.275 2.274 sum 8.195 5.661 -2.233 10.207 Atomic orbital electron populations 1.22263 0.92913 1.05228 1.05550 1.22283 0.91790 0.86838 0.70615 1.90478 1.71578 1.34222 1.37024 1.21245 0.95415 0.95839 1.12148 1.22333 1.01334 0.90125 0.87698 1.20805 0.95076 0.94713 1.08698 1.17333 0.78226 0.86847 0.80257 1.90742 1.64750 1.41804 1.45431 1.49679 1.32030 1.15597 1.38689 1.24460 0.92340 0.96814 0.92005 1.19551 0.85702 0.88675 0.86004 1.86056 1.46952 1.67766 1.37547 1.21384 1.17438 1.13397 1.05090 0.90877 1.25057 0.96108 0.93885 0.97795 1.69227 1.30428 1.15788 1.38466 0.86362 0.79313 0.78389 0.82360 1.19840 1.20919 1.19756 1.23384 0.88270 0.91796 0.97919 1.21631 0.89944 0.94067 0.87040 1.20856 0.98977 0.91895 1.04436 1.67517 1.39791 0.97315 1.16189 1.21825 0.89740 0.94486 0.87459 1.21068 1.00012 0.91611 1.03934 0.87732 0.89082 0.89362 0.82687 0.89851 0.91790 0.74895 0.91420 0.91149 0.89350 0.88996 0.90446 0.89854 0.89624 0.90898 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.14 9.66 36.00 0.35 -1.79 16 2 C 0.41 5.22 7.16 -30.68 -0.22 5.00 16 3 O -0.46 -6.47 14.12 5.58 0.08 -6.39 16 4 C -0.24 -3.44 5.88 -104.96 -0.62 -4.05 16 5 C 0.01 0.16 8.26 -38.37 -0.32 -0.16 16 6 C -0.19 -3.16 5.71 -104.88 -0.60 -3.76 16 7 C 0.58 11.31 6.95 -12.32 -0.09 11.23 16 8 O -0.55 -11.68 15.97 5.32 0.09 -11.59 16 9 N -0.63 -12.31 3.68 -186.15 -0.68 -13.00 16 10 C 0.07 1.30 7.25 -8.36 -0.06 1.24 16 11 C 0.24 5.36 1.58 -91.12 -0.14 5.22 16 12 O -0.57 -13.57 13.55 -35.23 -0.48 -14.05 16 13 C -0.54 -12.48 8.70 -34.44 -0.30 -12.78 16 14 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.72 5.40 -17.82 -0.10 1.63 16 16 N -0.90 -21.05 11.01 55.43 0.61 -20.44 16 17 Si 0.91 18.37 29.54 -169.99 -5.02 13.35 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 C 0.11 2.18 8.02 -8.51 -0.07 2.11 16 22 C 0.21 3.33 6.82 -82.08 -0.56 2.77 16 23 C -0.10 -1.43 8.94 36.01 0.32 -1.11 16 24 N -0.50 -7.60 10.15 -5.03 -0.05 -7.65 16 25 C 0.20 2.91 6.83 -82.02 -0.56 2.35 16 26 C -0.11 -1.30 8.83 36.01 0.32 -0.98 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.09 0.91 6.78 -51.93 -0.35 0.55 16 30 H 0.16 2.28 4.60 -52.48 -0.24 2.04 16 31 H 0.08 1.58 8.10 -51.93 -0.42 1.15 16 32 H 0.06 1.20 5.90 -51.93 -0.31 0.89 16 33 H 0.39 9.45 6.32 45.56 0.29 9.74 16 34 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.18 5.90 -51.93 -0.31 0.87 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -27.06 350.85 -7.42 -34.49 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.61 Total: 13.09 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -2.64 Total: 6.92 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.12 Total: -41.09 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.31 Total: -32.04 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.06 -7.42 -34.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356583799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.321 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds