Wall clock time and date at job start Tue Mar 31 2020 13:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 120.00051 * 2 1 4 4 C 1.47173 * 120.00221 * 179.97438 * 2 1 3 5 5 C 1.40053 * 120.51711 * 353.91515 * 4 2 1 6 6 C 1.39659 * 118.13345 * 179.97438 * 5 4 2 7 7 C 1.47867 * 120.47411 * 180.02562 * 6 5 4 8 8 O 1.21550 * 119.99723 * 138.78434 * 7 6 5 9 9 N 1.34770 * 119.99959 * 318.77547 * 7 6 5 10 10 C 1.47070 * 136.05685 * 4.85702 * 9 7 6 11 11 C 1.53759 * 87.88724 * 152.95834 * 10 9 7 12 12 O 1.42897 * 114.39156 * 272.67086 * 11 10 9 13 13 C 1.50699 * 114.26901 * 139.79034 * 11 10 9 14 14 H 1.08000 * 120.00105 * 266.47966 * 13 11 10 15 15 C 1.37881 * 120.00016 * 86.46803 * 13 11 10 16 16 N 1.31517 * 120.00112 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99911 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46941 * 60.00622 * 17 15 13 19 19 H 1.48504 * 109.47153 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47420 * 300.00626 * 17 15 13 21 21 C 1.47067 * 136.05835 * 185.21449 * 9 7 6 22 22 C 1.39708 * 119.04624 * 359.97438 * 6 5 4 23 23 C 1.50707 * 119.52718 * 179.72469 * 22 6 5 24 24 N 1.31747 * 120.94496 * 0.02562 * 22 6 5 25 25 C 1.31710 * 122.07317 * 0.02562 * 24 22 6 26 26 C 1.50701 * 119.58231 * 179.97438 * 25 24 22 27 27 H 1.09002 * 109.47534 * 270.00582 * 1 2 3 28 28 H 1.09010 * 109.47159 * 30.00101 * 1 2 3 29 29 H 1.09003 * 109.47184 * 149.99769 * 1 2 3 30 30 H 1.08005 * 120.93110 * 359.95024 * 5 4 2 31 31 H 1.09005 * 113.46427 * 267.68875 * 10 9 7 32 32 H 1.08998 * 113.47206 * 38.12755 * 10 9 7 33 33 H 0.96695 * 114.00472 * 273.58858 * 12 11 10 34 34 H 0.96994 * 119.99820 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.46811 * 321.87277 * 21 9 7 36 36 H 1.09003 * 113.46416 * 92.25110 * 21 9 7 37 37 H 1.08996 * 109.47128 * 86.73766 * 23 22 6 38 38 H 1.08998 * 109.46926 * 206.73663 * 23 22 6 39 39 H 1.09006 * 109.47221 * 326.73515 * 23 22 6 40 40 H 1.09003 * 109.47064 * 262.57218 * 26 25 24 41 41 H 1.08995 * 109.47277 * 22.57767 * 26 25 24 42 42 H 1.08999 * 109.47372 * 142.57801 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5595 -2.4903 0.1290 6 6 2.3072 -3.6698 0.1228 7 6 1.6387 -4.9822 0.2545 8 8 2.0029 -5.9207 -0.4267 9 7 0.6258 -5.1376 1.1298 10 6 -0.1369 -4.2627 2.0330 11 6 -1.3135 -5.2431 1.8967 12 8 -2.1727 -4.9829 0.7850 13 6 -2.0609 -5.4961 3.1807 14 1 -1.7925 -6.3352 3.8054 15 6 -3.0871 -4.6561 3.5580 16 7 -3.4141 -3.6344 2.7972 17 14 -4.0140 -4.9701 5.1492 18 1 -3.0675 -4.9160 6.2923 19 1 -5.0622 -3.9329 5.3244 20 1 -4.6493 -6.3113 5.0957 21 6 -0.1990 -6.2579 1.6068 22 6 3.6958 -3.5921 -0.0106 23 6 4.5138 -4.8578 -0.0124 24 7 4.3008 -2.4278 -0.1290 25 6 3.6361 -1.2907 -0.1273 26 6 4.3854 0.0094 -0.2658 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 0.4845 -2.5148 0.2304 31 1 0.2743 -4.2157 3.0414 32 1 -0.3402 -3.2774 1.6138 33 1 -2.8737 -4.3433 0.9708 34 1 -4.1363 -3.0438 3.0624 35 1 -0.4551 -6.9723 0.8245 36 1 0.1964 -6.7375 2.5023 37 1 4.5675 -5.2543 -1.0262 38 1 5.5198 -4.6407 0.3466 39 1 4.0457 -5.5939 0.6413 40 1 4.5458 0.4433 0.7212 41 1 5.3481 -0.1751 -0.7425 42 1 3.8043 0.7005 -0.8763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356583799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:56 Heat of formation + Delta-G solvation = -63.007662 kcal Electronic energy + Delta-G solvation = -27122.717218 eV Core-core repulsion = 23261.806275 eV Total energy + Delta-G solvation = -3860.910943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26657 -41.13964 -40.02522 -38.96111 -35.95085 -34.66866 -34.64920 -34.10072 -31.53878 -30.35074 -30.16591 -28.39411 -27.05183 -26.81920 -24.40810 -23.72770 -22.40569 -21.24327 -20.03266 -19.34562 -18.37030 -18.13103 -17.44384 -17.05265 -16.80846 -16.56693 -16.37940 -16.12389 -15.93563 -15.46974 -15.40331 -14.99564 -14.61444 -14.52276 -14.19919 -13.94077 -13.79366 -13.50588 -13.38723 -13.35668 -13.20017 -13.08648 -12.96991 -12.93231 -12.75686 -12.74965 -12.22229 -12.15908 -11.75589 -11.28292 -11.12361 -10.91952 -10.64141 -10.47979 -10.23834 -10.12448 -9.62134 -8.26742 -6.42314 -0.80526 -0.35578 1.11909 1.49768 1.53152 1.55665 1.58842 1.82459 2.41505 2.46771 2.75965 2.95344 3.01932 3.21185 3.39110 3.42225 3.70974 3.82665 4.01924 4.11676 4.15947 4.33739 4.44574 4.50969 4.57180 4.58288 4.59611 4.62501 4.63575 4.68784 4.74861 4.81567 4.86486 4.94448 4.99994 5.07642 5.12377 5.24134 5.38479 5.74796 5.91600 6.34782 6.57340 6.62629 6.73060 6.97644 7.31158 7.51513 8.79300 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.004378 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.404008 B = 6393.366234 C = 7839.017478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.410 3.590 3 O -0.468 6.468 4 C -0.245 4.245 5 C 0.016 3.984 6 C -0.208 4.208 7 C 0.585 3.415 8 O -0.572 6.572 9 N -0.629 5.629 10 C 0.080 3.920 11 C 0.224 3.776 12 O -0.583 6.583 13 C -0.554 4.554 14 H 0.074 0.926 15 C 0.039 3.961 16 N -0.912 5.912 17 Si 0.964 3.036 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.276 1.276 21 C 0.108 3.892 22 C 0.208 3.792 23 C -0.100 4.100 24 N -0.503 5.503 25 C 0.199 3.801 26 C -0.105 4.105 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.391 0.609 34 H 0.277 0.723 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.701 6.692 -1.989 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.290 3.710 3 O -0.346 6.346 4 C -0.248 4.248 5 C -0.010 4.010 6 C -0.213 4.213 7 C 0.375 3.625 8 O -0.454 6.454 9 N -0.361 5.361 10 C -0.042 4.042 11 C 0.182 3.818 12 O -0.396 6.396 13 C -0.592 4.592 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.553 5.553 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.202 1.202 21 C -0.014 4.014 22 C 0.069 3.931 23 C -0.157 4.157 24 N -0.213 5.213 25 C 0.061 3.939 26 C -0.161 4.161 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.175 0.825 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.521 6.526 -2.882 12.711 hybrid contribution -1.991 -0.073 1.040 2.248 sum 8.529 6.452 -1.842 10.852 Atomic orbital electron populations 1.22281 0.91027 1.06112 1.06203 1.22459 0.92646 0.85976 0.69943 1.90479 1.72039 1.34375 1.37714 1.21419 0.95562 0.96088 1.11713 1.22338 1.01381 0.90038 0.87209 1.20664 0.95689 0.93824 1.11125 1.17678 0.77803 0.87555 0.79424 1.90717 1.65461 1.43000 1.46241 1.49671 1.32276 1.15297 1.38858 1.24258 0.90997 0.96553 0.92434 1.19770 0.86163 0.90461 0.85363 1.86044 1.47252 1.67812 1.38520 1.21612 1.18209 1.13701 1.05642 0.90797 1.25649 0.96675 0.93772 1.00120 1.69277 1.30633 1.16085 1.39300 0.85510 0.78180 0.77824 0.79553 1.19421 1.20830 1.20156 1.23409 0.88063 0.91564 0.98353 1.21883 0.89728 0.94921 0.86526 1.20849 0.99698 0.90831 1.04343 1.67602 1.39734 0.97356 1.16594 1.22326 0.90189 0.95140 0.86293 1.21101 1.00294 0.90219 1.04491 0.87047 0.87558 0.89164 0.82479 0.89069 0.91066 0.75313 0.91249 0.92299 0.87495 0.88836 0.88340 0.91000 0.88786 0.89622 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 9.66 71.24 0.69 -3.14 16 2 C 0.41 9.81 7.16 28.03 0.20 10.01 16 3 O -0.47 -12.38 14.12 -2.95 -0.04 -12.43 16 4 C -0.24 -6.56 5.88 -20.09 -0.12 -6.68 16 5 C 0.02 0.46 8.26 23.05 0.19 0.65 16 6 C -0.21 -6.88 5.71 -20.03 -0.11 -7.00 16 7 C 0.59 22.59 6.95 86.79 0.60 23.20 16 8 O -0.57 -24.59 15.97 -3.87 -0.06 -24.65 16 9 N -0.63 -24.51 3.68 -861.60 -3.17 -27.68 16 10 C 0.08 3.08 7.25 83.27 0.60 3.68 16 11 C 0.22 9.85 1.58 -11.12 -0.02 9.84 16 12 O -0.58 -27.95 13.55 -148.98 -2.02 -29.97 16 13 C -0.55 -25.55 8.70 25.60 0.22 -25.33 16 14 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 15 C 0.04 1.78 5.40 84.66 0.46 2.23 16 16 N -0.91 -42.14 11.01 21.45 0.24 -41.90 16 17 Si 0.96 36.90 29.54 68.60 2.03 38.92 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 19 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 20 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 21 C 0.11 4.36 8.02 83.18 0.67 5.03 16 22 C 0.21 6.35 6.82 42.93 0.29 6.64 16 23 C -0.10 -2.67 8.94 71.24 0.64 -2.03 16 24 N -0.50 -14.59 10.15 -169.84 -1.72 -16.31 16 25 C 0.20 5.37 6.83 42.98 0.29 5.66 16 26 C -0.10 -2.25 8.83 71.24 0.63 -1.63 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.09 1.71 6.78 -2.39 -0.02 1.69 16 30 H 0.16 4.48 4.60 -2.91 -0.01 4.47 16 31 H 0.09 3.35 8.10 -2.38 -0.02 3.33 16 32 H 0.07 2.60 5.90 -2.39 -0.01 2.59 16 33 H 0.39 18.87 6.32 -74.06 -0.47 18.40 16 34 H 0.28 12.21 8.31 -92.71 -0.77 11.44 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.11 3.85 8.10 -2.39 -0.02 3.83 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.08 6.72 -2.38 -0.02 2.06 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 2.17 5.90 -2.39 -0.01 2.15 16 Total: -1.00 -55.83 350.85 1.10 -54.73 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.61 Total: 38.14 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 5.23 Total: 21.14 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -4.65 Total: -85.89 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -2.12 Total: -67.05 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.92 kcal Total: -55.83 1.10 -54.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356583799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.273 kcal (2) G-P(sol) polarization free energy of solvation -55.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds