Wall clock time and date at job start Tue Mar 31 2020 12:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00518 * 2 1 4 4 H 1.48494 * 109.47190 * 239.99848 * 3 2 1 5 5 H 1.48496 * 109.46711 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47117 * 119.99899 * 3 2 1 7 7 C 1.37880 * 119.99413 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00344 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47530 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00274 * 180.02562 * 10 9 7 12 12 O 1.21547 * 120.00068 * 359.97438 * 11 10 9 13 13 C 1.47870 * 120.00168 * 179.97438 * 11 10 9 14 14 C 1.39613 * 120.10662 * 359.97438 * 13 11 10 15 15 C 1.37982 * 119.99328 * 180.02562 * 14 13 11 16 16 C 1.38256 * 120.22325 * 0.02562 * 15 14 13 17 17 C 1.38949 * 120.22046 * 359.97438 * 16 15 14 18 18 N 1.39964 * 119.99840 * 179.97438 * 17 16 15 19 19 C 1.34771 * 119.99774 * 146.76104 * 18 17 16 20 20 O 1.21284 * 120.00236 * 354.73195 * 19 18 17 21 21 C 1.50699 * 119.99759 * 174.72877 * 19 18 17 22 22 H 1.09003 * 110.35723 * 305.69815 * 21 19 18 23 23 C 1.54956 * 110.30988 * 67.83575 * 21 19 18 24 24 C 1.55304 * 100.94409 * 155.35855 * 23 21 19 25 25 C 1.54387 * 102.25084 * 325.86934 * 24 23 21 26 26 O 1.43232 * 107.59168 * 21.35753 * 25 24 23 27 27 C 1.38637 * 120.00271 * 0.25677 * 17 16 15 28 28 H 0.97005 * 119.99327 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46732 * 59.99732 * 9 7 2 30 30 H 1.09000 * 109.46771 * 300.00416 * 9 7 2 31 31 H 0.97009 * 119.99890 * 359.97438 * 10 9 7 32 32 H 1.07996 * 120.01029 * 0.04271 * 14 13 11 33 33 H 1.08002 * 119.89141 * 179.97438 * 15 14 13 34 34 H 1.08002 * 119.89185 * 179.97438 * 16 15 14 35 35 H 0.97002 * 119.99593 * 326.76272 * 18 17 16 36 36 H 1.08997 * 111.12308 * 37.43953 * 23 21 19 37 37 H 1.08998 * 111.12207 * 273.28192 * 23 21 19 38 38 H 1.08992 * 110.85003 * 207.67686 * 24 23 21 39 39 H 1.08999 * 110.84630 * 84.05454 * 24 23 21 40 40 H 1.08998 * 109.82737 * 261.83865 * 25 24 23 41 41 H 1.08999 * 109.90595 * 140.91226 * 25 24 23 42 42 H 1.07995 * 120.10609 * 179.73989 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0018 11 6 1.7534 -4.8834 0.0015 12 8 0.5584 -5.1054 0.0006 13 6 2.7142 -6.0074 0.0021 14 6 4.0873 -5.7550 0.0026 15 6 4.9818 -6.8056 0.0026 16 6 4.5233 -8.1099 0.0018 17 6 3.1586 -8.3716 0.0014 18 7 2.6996 -9.6938 0.0000 19 6 1.5564 -10.0108 0.6393 20 8 0.9757 -9.1721 1.2953 21 6 0.9994 -11.4075 0.5391 22 1 0.8799 -11.6940 -0.5058 23 6 1.9283 -12.4106 1.2686 24 6 0.9264 -13.5482 1.6064 25 6 -0.3791 -12.7674 1.8699 26 8 -0.2589 -11.4932 1.2267 27 6 2.2517 -7.3230 -0.0036 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5570 -0.8897 30 1 0.6238 -2.5566 0.8903 31 1 3.1565 -3.4356 0.0021 32 1 4.4494 -4.7375 0.0031 33 1 6.0436 -6.6084 0.0025 34 1 5.2282 -8.9282 0.0015 35 1 3.2044 -10.3819 -0.4611 36 1 2.3450 -11.9720 2.1753 37 1 2.7185 -12.7664 0.6076 38 1 1.2410 -14.0901 2.4982 39 1 0.8092 -14.2256 0.7606 40 1 -0.5170 -12.6288 2.9422 41 1 -1.2274 -13.3121 1.4555 42 1 1.1907 -7.5244 -0.0081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357414725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:52 Heat of formation + Delta-G solvation = -88.085545 kcal Electronic energy + Delta-G solvation = -25457.456147 eV Core-core repulsion = 21595.457745 eV Total energy + Delta-G solvation = -3861.998401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01583 -39.77111 -38.77886 -37.58534 -34.95288 -34.19361 -32.69171 -32.33185 -31.01331 -30.86646 -29.07738 -27.20371 -24.51173 -24.02687 -22.47692 -22.20922 -22.11683 -20.52662 -19.86318 -18.41326 -17.96930 -17.10945 -16.40154 -16.21165 -15.93348 -15.51094 -15.39873 -15.10934 -15.02193 -14.50093 -14.30490 -14.06117 -13.87033 -13.72688 -13.53342 -12.85074 -12.77459 -12.45782 -12.26540 -12.00860 -11.88815 -11.84931 -11.73053 -11.48717 -11.43231 -10.96951 -10.85099 -10.53219 -10.29777 -10.28726 -9.69937 -9.37762 -9.11738 -8.88667 -8.69690 -8.25994 -7.83063 -6.12571 -4.19709 0.96079 1.31512 2.29361 2.48661 3.28151 3.32258 3.32615 3.34321 3.48565 3.83446 4.03232 4.16235 4.23153 4.31093 4.39832 4.58004 4.59247 4.74919 4.84402 4.91142 5.07658 5.15711 5.20468 5.23224 5.29117 5.30648 5.33599 5.47867 5.54392 5.55719 5.89683 6.14144 6.25189 6.38215 6.46223 6.52510 6.92827 7.10195 7.35967 7.45886 7.56533 7.70029 7.87684 8.00624 8.64645 8.81156 9.11763 9.46370 10.97632 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002372 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.171132 B =11801.955493 C =12791.018747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.537 3.463 12 O -0.545 6.545 13 C -0.099 4.099 14 C -0.102 4.102 15 C -0.108 4.108 16 C -0.130 4.130 17 C 0.133 3.867 18 N -0.671 5.671 19 C 0.505 3.495 20 O -0.484 6.484 21 C 0.068 3.932 22 H 0.102 0.898 23 C -0.148 4.148 24 C -0.153 4.153 25 C 0.047 3.953 26 O -0.351 6.351 27 C -0.067 4.067 28 H 0.266 0.734 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.390 0.610 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.409 0.591 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.146 -29.265 -0.259 31.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.353 5.353 11 C 0.322 3.678 12 O -0.424 6.424 13 C -0.103 4.103 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.151 4.151 17 C 0.040 3.960 18 N -0.319 5.319 19 C 0.291 3.709 20 O -0.355 6.355 21 C 0.006 3.994 22 H 0.119 0.881 23 C -0.186 4.186 24 C -0.191 4.191 25 C -0.030 4.030 26 O -0.269 6.269 27 C -0.088 4.088 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.224 0.776 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.419 -28.519 0.249 30.035 hybrid contribution 1.310 0.460 -0.223 1.406 sum 10.730 -28.059 0.026 30.040 Atomic orbital electron populations 1.69972 1.06103 1.27403 1.48706 1.24959 0.94930 0.99442 0.94719 0.86458 0.79393 0.82289 0.78659 1.20068 1.21084 1.20064 1.21174 0.93209 0.90406 1.53429 0.91926 1.19154 0.88299 0.81742 0.97973 1.46405 1.11210 1.05877 1.71785 1.18218 0.87992 0.83269 0.78322 1.90752 1.16168 1.84817 1.50704 1.20183 0.93788 0.94053 1.02314 1.21416 0.92133 0.99885 0.98726 1.20852 0.99758 0.91609 1.00429 1.20938 0.93061 0.97653 1.03450 1.17545 0.92539 0.83504 1.02427 1.43349 1.25420 1.08516 1.54635 1.20675 0.80645 0.90305 0.79308 1.90851 1.57459 1.49819 1.37321 1.22804 0.85833 0.92146 0.98585 0.88062 1.23292 0.98276 0.95209 1.01781 1.23131 0.94614 0.98039 1.03302 1.23249 0.97661 0.83739 0.98328 1.88591 1.33944 1.35182 1.69180 1.21263 1.01133 0.90144 0.96261 0.92380 0.95298 0.95287 0.77622 0.85077 0.85089 0.85586 0.75523 0.89515 0.88810 0.89403 0.89959 0.90799 0.90710 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.88 5.43 -5.20 -0.03 6.85 16 10 N -0.70 -15.92 5.50 -62.43 -0.34 -16.26 16 11 C 0.54 12.16 7.77 -12.32 -0.10 12.06 16 12 O -0.54 -14.68 16.34 5.32 0.09 -14.59 16 13 C -0.10 -1.78 5.87 -104.99 -0.62 -2.39 16 14 C -0.10 -1.41 9.54 -39.16 -0.37 -1.78 16 15 C -0.11 -1.15 10.02 -39.67 -0.40 -1.55 16 16 C -0.13 -1.31 9.95 -39.31 -0.39 -1.70 16 17 C 0.13 1.70 6.27 -83.73 -0.53 1.17 16 18 N -0.67 -6.44 5.34 -9.89 -0.05 -6.50 16 19 C 0.51 6.24 6.91 -10.99 -0.08 6.16 16 20 O -0.48 -8.85 14.25 -13.77 -0.20 -9.04 16 21 C 0.07 0.59 3.87 -26.85 -0.10 0.48 16 22 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 23 C -0.15 -0.75 6.56 -24.48 -0.16 -0.91 16 24 C -0.15 -0.66 7.02 -24.78 -0.17 -0.84 16 25 C 0.05 0.34 7.79 37.88 0.30 0.64 16 26 O -0.35 -4.15 10.61 -54.55 -0.58 -4.73 16 27 C -0.07 -1.16 8.20 -38.98 -0.32 -1.48 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.39 7.45 6.35 -40.82 -0.26 7.19 16 32 H 0.13 1.61 6.40 -52.49 -0.34 1.28 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.41 2.02 8.82 -40.82 -0.36 1.66 16 36 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.15 2.97 6.02 -52.49 -0.32 2.65 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -38.74 358.91 -8.79 -47.53 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.45 Total: 4.93 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.38 Total: 2.99 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.34 Total: -48.64 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.69 Total: -28.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.74 -8.79 -47.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357414725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.555 kcal (2) G-P(sol) polarization free energy of solvation -38.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds