Wall clock time and date at job start Tue Mar 31 2020 12:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00518 * 2 1 4 4 H 1.48494 * 109.47190 * 239.99848 * 3 2 1 5 5 H 1.48496 * 109.46711 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47117 * 119.99899 * 3 2 1 7 7 C 1.37880 * 119.99413 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00344 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47530 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00274 * 180.02562 * 10 9 7 12 12 O 1.21547 * 120.00068 * 359.97438 * 11 10 9 13 13 C 1.47870 * 120.00168 * 179.97438 * 11 10 9 14 14 C 1.39613 * 120.10662 * 359.97438 * 13 11 10 15 15 C 1.37982 * 119.99328 * 180.02562 * 14 13 11 16 16 C 1.38256 * 120.22325 * 0.02562 * 15 14 13 17 17 C 1.38949 * 120.22046 * 359.97438 * 16 15 14 18 18 N 1.39964 * 119.99840 * 179.97438 * 17 16 15 19 19 C 1.34771 * 119.99774 * 146.76104 * 18 17 16 20 20 O 1.21284 * 120.00236 * 354.73195 * 19 18 17 21 21 C 1.50699 * 119.99759 * 174.72877 * 19 18 17 22 22 H 1.09003 * 110.35723 * 305.69815 * 21 19 18 23 23 C 1.54956 * 110.30988 * 67.83575 * 21 19 18 24 24 C 1.55304 * 100.94409 * 155.35855 * 23 21 19 25 25 C 1.54387 * 102.25084 * 325.86934 * 24 23 21 26 26 O 1.43232 * 107.59168 * 21.35753 * 25 24 23 27 27 C 1.38637 * 120.00271 * 0.25677 * 17 16 15 28 28 H 0.97005 * 119.99327 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46732 * 59.99732 * 9 7 2 30 30 H 1.09000 * 109.46771 * 300.00416 * 9 7 2 31 31 H 0.97009 * 119.99890 * 359.97438 * 10 9 7 32 32 H 1.07996 * 120.01029 * 0.04271 * 14 13 11 33 33 H 1.08002 * 119.89141 * 179.97438 * 15 14 13 34 34 H 1.08002 * 119.89185 * 179.97438 * 16 15 14 35 35 H 0.97002 * 119.99593 * 326.76272 * 18 17 16 36 36 H 1.08997 * 111.12308 * 37.43953 * 23 21 19 37 37 H 1.08998 * 111.12207 * 273.28192 * 23 21 19 38 38 H 1.08992 * 110.85003 * 207.67686 * 24 23 21 39 39 H 1.08999 * 110.84630 * 84.05454 * 24 23 21 40 40 H 1.08998 * 109.82737 * 261.83865 * 25 24 23 41 41 H 1.08999 * 109.90595 * 140.91226 * 25 24 23 42 42 H 1.07995 * 120.10609 * 179.73989 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0018 11 6 1.7534 -4.8834 0.0015 12 8 0.5584 -5.1054 0.0006 13 6 2.7142 -6.0074 0.0021 14 6 4.0873 -5.7550 0.0026 15 6 4.9818 -6.8056 0.0026 16 6 4.5233 -8.1099 0.0018 17 6 3.1586 -8.3716 0.0014 18 7 2.6996 -9.6938 0.0000 19 6 1.5564 -10.0108 0.6393 20 8 0.9757 -9.1721 1.2953 21 6 0.9994 -11.4075 0.5391 22 1 0.8799 -11.6940 -0.5058 23 6 1.9283 -12.4106 1.2686 24 6 0.9264 -13.5482 1.6064 25 6 -0.3791 -12.7674 1.8699 26 8 -0.2589 -11.4932 1.2267 27 6 2.2517 -7.3230 -0.0036 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5570 -0.8897 30 1 0.6238 -2.5566 0.8903 31 1 3.1565 -3.4356 0.0021 32 1 4.4494 -4.7375 0.0031 33 1 6.0436 -6.6084 0.0025 34 1 5.2282 -8.9282 0.0015 35 1 3.2044 -10.3819 -0.4611 36 1 2.3450 -11.9720 2.1753 37 1 2.7185 -12.7664 0.6076 38 1 1.2410 -14.0901 2.4982 39 1 0.8092 -14.2256 0.7606 40 1 -0.5170 -12.6288 2.9422 41 1 -1.2274 -13.3121 1.4555 42 1 1.1907 -7.5244 -0.0081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357414725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:51 Heat of formation + Delta-G solvation = -118.823704 kcal Electronic energy + Delta-G solvation = -25458.789053 eV Core-core repulsion = 21595.457745 eV Total energy + Delta-G solvation = -3863.331308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95884 -40.98928 -39.96359 -38.82557 -36.30238 -35.99380 -34.44122 -33.23503 -32.22602 -31.69322 -30.03864 -29.15591 -25.72003 -25.24414 -23.95701 -23.36957 -22.63776 -21.58953 -21.38643 -19.84688 -18.80845 -18.29936 -17.77910 -17.30221 -17.09117 -16.95585 -16.58230 -16.28929 -16.22350 -16.07002 -15.82544 -15.32905 -14.75279 -14.62638 -14.56079 -14.24314 -14.18343 -14.07296 -13.63571 -13.12532 -12.96928 -12.85337 -12.75842 -12.68610 -12.57118 -12.30900 -12.24618 -11.86546 -11.60436 -11.55502 -11.11481 -10.99278 -10.82674 -10.53571 -10.12981 -9.83621 -9.25998 -8.30912 -6.49201 -0.19475 0.23513 1.36508 1.42099 1.47769 1.55899 1.69157 1.89370 2.26352 2.47760 2.84449 2.90902 3.03654 3.32625 3.55303 3.74842 3.88656 3.90581 4.06168 4.10362 4.12666 4.19992 4.32266 4.42418 4.48560 4.74427 4.77744 4.83777 4.86619 4.96417 5.03187 5.15560 5.18073 5.18765 5.25996 5.36405 5.37694 5.40619 5.63274 5.78753 5.85303 5.92628 6.34992 6.59449 6.78383 7.04901 7.18125 7.35387 8.81591 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002372 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.171132 B =11801.955493 C =12791.018747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.531 3.469 12 O -0.606 6.606 13 C -0.133 4.133 14 C -0.100 4.100 15 C -0.091 4.091 16 C -0.098 4.098 17 C 0.129 3.871 18 N -0.648 5.648 19 C 0.499 3.501 20 O -0.558 6.558 21 C 0.064 3.936 22 H 0.132 0.868 23 C -0.138 4.138 24 C -0.142 4.142 25 C 0.033 3.967 26 O -0.401 6.401 27 C -0.096 4.096 28 H 0.270 0.730 29 H -0.012 1.012 30 H -0.015 1.015 31 H 0.410 0.590 32 H 0.145 0.855 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.436 0.564 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 -31.476 -0.988 35.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.814 3.186 4 H -0.183 1.183 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.345 5.345 11 C 0.320 3.680 12 O -0.489 6.489 13 C -0.136 4.136 14 C -0.119 4.119 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.035 3.965 18 N -0.298 5.298 19 C 0.287 3.713 20 O -0.434 6.434 21 C 0.004 3.996 22 H 0.149 0.851 23 C -0.175 4.175 24 C -0.179 4.179 25 C -0.043 4.043 26 O -0.320 6.320 27 C -0.117 4.117 28 H 0.078 0.922 29 H 0.006 0.994 30 H 0.003 0.997 31 H 0.247 0.753 32 H 0.163 0.837 33 H 0.200 0.800 34 H 0.201 0.799 35 H 0.277 0.723 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.351 -30.803 -0.513 34.420 hybrid contribution -0.514 1.005 0.006 1.129 sum 14.836 -29.798 -0.507 33.291 Atomic orbital electron populations 1.70161 1.08490 1.28766 1.49664 1.26184 0.95850 1.04237 0.93641 0.85102 0.77812 0.75962 0.79686 1.18261 1.21113 1.18459 1.21559 0.94425 0.90126 1.53392 0.89337 1.18624 0.88736 0.84315 0.94092 1.46078 1.11419 1.04982 1.72006 1.19145 0.88285 0.84316 0.76255 1.90702 1.19229 1.85726 1.53268 1.19758 0.94607 0.91997 1.07285 1.21634 0.90250 1.02026 0.97978 1.21430 1.01467 0.90574 0.97474 1.21562 0.91984 0.99322 0.98884 1.17674 0.93256 0.83581 1.01959 1.43178 1.24848 1.08028 1.53732 1.21594 0.80455 0.91298 0.77971 1.90834 1.59569 1.52200 1.40787 1.23113 0.85754 0.90325 1.00418 0.85106 1.23356 0.98614 0.93947 1.01626 1.23143 0.92135 0.97658 1.04965 1.23485 1.00230 0.82923 0.97613 1.88551 1.35830 1.37668 1.69968 1.21034 0.99894 0.91724 0.99086 0.92171 0.99376 0.99719 0.75275 0.83721 0.80047 0.79879 0.72265 0.90842 0.84488 0.87846 0.87635 0.91832 0.89755 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.59 13.29 21.45 0.28 -58.30 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.99 43.36 29.54 68.60 2.03 45.38 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -31.70 9.28 25.60 0.24 -31.46 16 8 H 0.09 4.46 7.60 -2.91 -0.02 4.44 16 9 C 0.26 15.80 5.43 85.63 0.46 16.26 16 10 N -0.70 -33.42 5.50 -469.71 -2.58 -36.01 16 11 C 0.53 26.29 7.77 86.79 0.67 26.96 16 12 O -0.61 -36.64 16.34 -3.86 -0.06 -36.70 16 13 C -0.13 -4.98 5.87 -20.10 -0.12 -5.09 16 14 C -0.10 -2.54 9.54 22.54 0.21 -2.33 16 15 C -0.09 -1.45 10.02 22.21 0.22 -1.23 16 16 C -0.10 -1.43 9.95 22.44 0.22 -1.21 16 17 C 0.13 3.10 6.27 38.11 0.24 3.33 16 18 N -0.65 -11.22 5.34 -303.60 -1.62 -12.84 16 19 C 0.50 12.64 6.91 87.66 0.61 13.25 16 20 O -0.56 -22.48 14.25 15.43 0.22 -22.26 16 21 C 0.06 1.06 3.87 30.52 0.12 1.18 16 22 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 23 C -0.14 -0.98 6.56 32.05 0.21 -0.77 16 24 C -0.14 -0.83 7.02 31.86 0.22 -0.60 16 25 C 0.03 0.49 7.79 72.45 0.56 1.05 16 26 O -0.40 -10.03 10.61 -130.51 -1.38 -11.41 16 27 C -0.10 -3.53 8.20 22.66 0.19 -3.34 16 28 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.41 15.93 6.35 -92.70 -0.59 15.34 16 32 H 0.15 3.20 6.40 -2.91 -0.02 3.18 16 33 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 35 H 0.44 2.42 8.82 -92.71 -0.82 1.60 16 36 H 0.07 0.75 8.05 -2.39 -0.02 0.73 16 37 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 4.55 6.02 -2.91 -0.02 4.53 16 Total: -1.00 -99.82 358.91 1.07 -98.75 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.34 Total: 16.90 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 4.53 Total: 16.49 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -3.92 Total: -107.15 kcal Atomic # 8 Polarization: -69.15 SS G_CDS: -1.23 Total: -70.37 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -99.82 1.07 -98.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357414725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.073 kcal (2) G-P(sol) polarization free energy of solvation -99.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds