Wall clock time and date at job start Tue Mar 31 2020 13:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37650 * 119.97301 * 2 1 4 4 C 1.39758 * 119.94288 * 179.97438 * 3 2 1 5 5 C 1.47592 * 120.06428 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00503 * 44.88514 * 5 4 3 7 7 N 1.34779 * 119.99983 * 224.88805 * 5 4 3 8 8 C 1.47155 * 120.97999 * 355.49463 * 7 5 4 9 9 C 1.53717 * 108.15805 * 129.43251 * 8 7 5 10 10 O 1.42963 * 109.14687 * 52.54165 * 9 8 7 11 11 C 1.42966 * 114.16372 * 297.28635 * 10 9 8 12 12 C 1.47151 * 120.98313 * 175.78101 * 7 5 4 13 13 C 1.39796 * 119.86979 * 0.02562 * 4 3 2 14 14 C 1.37607 * 119.94034 * 359.69686 * 13 4 3 15 15 C 1.39234 * 119.96873 * 179.97438 * 2 1 3 16 16 N 1.39102 * 119.93826 * 0.02562 * 15 2 1 17 17 C 1.34776 * 119.99869 * 155.80276 * 16 15 2 18 18 O 1.21724 * 120.00322 * 354.51558 * 17 16 15 19 19 C 1.46203 * 119.99500 * 174.50978 * 17 16 15 20 20 H 1.07998 * 120.00335 * 0.27329 * 19 17 16 21 21 C 1.40126 * 119.99617 * 180.02562 * 19 17 16 22 22 N 1.30636 * 120.00089 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99873 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47103 * 60.00058 * 23 21 19 25 25 H 1.48497 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47321 * 300.00163 * 23 21 19 27 27 H 1.08995 * 109.47124 * 270.02820 * 1 2 3 28 28 H 1.09001 * 109.46529 * 30.01965 * 1 2 3 29 29 H 1.08997 * 109.47017 * 150.02451 * 1 2 3 30 30 H 1.08001 * 120.02936 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.68257 * 249.20881 * 8 7 5 32 32 H 1.08994 * 109.68263 * 9.77270 * 8 7 5 33 33 H 1.08995 * 109.66067 * 292.57337 * 9 8 7 34 34 H 1.09003 * 109.48457 * 172.39548 * 9 8 7 35 35 H 1.09000 * 109.51258 * 302.65390 * 11 10 9 36 36 H 1.09003 * 109.55029 * 182.53322 * 11 10 9 37 37 H 1.09001 * 109.68186 * 350.23500 * 12 7 5 38 38 H 1.09004 * 109.68192 * 110.79005 * 12 7 5 39 39 H 1.08004 * 120.02858 * 180.02562 * 13 4 3 40 40 H 1.08004 * 119.97106 * 180.31587 * 14 13 4 41 41 H 0.97003 * 119.99863 * 335.80981 * 16 15 2 42 42 H 0.97001 * 120.00143 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1924 0.0000 4 6 3.5923 1.1917 0.0005 5 6 4.3323 2.4686 0.0000 6 8 3.9915 3.3693 0.7423 7 7 5.3860 2.6365 -0.8235 8 6 5.8782 1.5297 -1.6591 9 6 6.0004 2.0383 -3.1045 10 8 6.7800 3.2367 -3.1155 11 6 6.1978 4.3202 -2.3868 12 6 6.0822 3.9301 -0.9089 13 6 4.2879 -0.0209 0.0005 14 6 3.5953 -1.2100 0.0063 15 6 2.2025 -1.2062 0.0005 16 7 1.5050 -2.4097 0.0005 17 6 2.0885 -3.5267 -0.4774 18 8 3.1861 -3.4642 -1.0000 19 6 1.4031 -4.8134 -0.3680 20 1 0.4274 -4.8682 0.0917 21 6 2.0099 -5.9748 -0.8644 22 7 3.1878 -5.9077 -1.4254 23 14 1.1346 -7.6191 -0.7241 24 1 -0.1606 -7.5537 -1.4477 25 1 1.9812 -8.6831 -1.3209 26 1 0.8869 -7.9274 0.7073 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6547 2.1278 0.0004 31 1 6.8534 1.2028 -1.2983 32 1 5.1741 0.6986 -1.6195 33 1 5.0083 2.2457 -3.5054 34 1 6.4894 1.2804 -3.7165 35 1 5.2064 4.5359 -2.7851 36 1 6.8285 5.2042 -2.4818 37 1 5.5132 4.6893 -0.3722 38 1 7.0776 3.8407 -0.4738 39 1 5.3679 -0.0245 0.0014 40 1 4.1322 -2.1471 0.0115 41 1 0.5987 -2.4450 0.3444 42 1 3.6078 -6.7116 -1.7694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357587135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:05 Heat of formation + Delta-G solvation = -80.388646 kcal Electronic energy + Delta-G solvation = -26549.594431 eV Core-core repulsion = 22687.929792 eV Total energy + Delta-G solvation = -3861.664639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58745 -39.40263 -38.24804 -36.91833 -34.87990 -33.81009 -32.83103 -32.06439 -31.48220 -29.64903 -27.89642 -26.94528 -26.24589 -24.29197 -23.44259 -22.12275 -21.15254 -20.07054 -19.27966 -17.86873 -17.09940 -16.68326 -16.45438 -16.02308 -15.70500 -15.64529 -15.21265 -15.06487 -14.53721 -14.19978 -14.12054 -13.75172 -13.44811 -13.12148 -13.08374 -12.78827 -12.62425 -12.42841 -12.31382 -12.00307 -11.73149 -11.54240 -11.44620 -11.33755 -11.14708 -10.94918 -10.81247 -10.64628 -10.46137 -10.32871 -9.78106 -9.49558 -9.02111 -8.65966 -8.40833 -7.84719 -7.16622 -6.48172 -4.96649 1.43278 1.82406 2.79250 2.95351 3.02324 3.06919 3.08357 3.62390 3.88084 4.04978 4.39714 4.42465 4.53269 4.62584 4.81885 4.88767 5.06693 5.11603 5.15338 5.28549 5.35925 5.41240 5.47324 5.49033 5.58449 5.60917 5.67444 5.75302 5.84604 5.91974 6.11135 6.22349 6.36446 6.46340 6.65649 6.83443 6.87981 6.93048 7.14008 7.23147 7.32259 7.55811 7.88072 7.99433 8.20795 8.70991 9.00912 10.19785 10.40809 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003154 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.564000 B = 8875.091050 C = 9883.968882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.162 4.162 3 C -0.038 4.038 4 C -0.192 4.192 5 C 0.576 3.424 6 O -0.546 6.546 7 N -0.615 5.615 8 C 0.058 3.942 9 C 0.047 3.953 10 O -0.382 6.382 11 C 0.049 3.951 12 C 0.078 3.922 13 C -0.075 4.075 14 C -0.147 4.147 15 C 0.224 3.776 16 N -0.687 5.687 17 C 0.538 3.462 18 O -0.554 6.554 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.087 3.913 22 N -0.756 5.756 23 Si 0.914 3.086 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 13.163 -1.078 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.166 4.166 3 C -0.058 4.058 4 C -0.196 4.196 5 C 0.367 3.633 6 O -0.425 6.425 7 N -0.350 5.350 8 C -0.064 4.064 9 C -0.030 4.030 10 O -0.300 6.300 11 C -0.029 4.029 12 C -0.045 4.045 13 C -0.094 4.094 14 C -0.168 4.168 15 C 0.122 3.878 16 N -0.327 5.327 17 C 0.346 3.654 18 O -0.437 6.437 19 C -0.571 4.571 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.383 5.383 23 Si 0.738 3.262 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.190 1.190 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.178 0.822 41 H 0.230 0.770 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.697 13.440 -1.253 13.765 hybrid contribution -1.043 -0.865 0.339 1.397 sum 1.654 12.576 -0.914 12.717 Atomic orbital electron populations 1.20615 0.91177 1.02634 1.01838 1.19485 0.95946 0.91681 1.09474 1.20530 0.91863 0.96975 0.96424 1.19383 0.94067 0.92057 1.14143 1.18487 0.78634 0.87541 0.78668 1.90729 1.67595 1.43982 1.40151 1.48041 1.31785 1.12295 1.42879 1.23008 1.01684 0.90944 0.90806 1.23114 0.96557 0.87403 0.95976 1.87950 1.47703 1.21279 1.73098 1.22970 0.99213 0.90180 0.90532 1.22250 0.98032 0.86602 0.97604 1.21136 0.99225 0.91161 0.97876 1.21644 0.93050 0.99592 1.02484 1.18076 0.91839 0.86071 0.91854 1.44250 1.17857 1.07227 1.63339 1.18424 0.86124 0.82533 0.78302 1.90571 1.21393 1.84974 1.46743 1.20849 1.05064 0.90225 1.40980 0.90892 1.25743 0.94393 1.00557 0.92841 1.69951 1.12619 1.29916 1.25836 0.86310 0.79869 0.80549 0.79449 1.19065 1.20297 1.19036 0.91699 0.91773 0.91562 0.86120 0.90323 0.86496 0.92396 0.87354 0.92682 0.87762 0.88211 0.90814 0.85949 0.82242 0.76968 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.44 36.01 0.34 -1.07 16 2 C -0.16 -2.69 5.89 -104.47 -0.62 -3.31 16 3 C -0.04 -0.62 9.32 -39.23 -0.37 -0.99 16 4 C -0.19 -3.18 5.22 -104.93 -0.55 -3.72 16 5 C 0.58 9.33 7.30 -12.44 -0.09 9.24 16 6 O -0.55 -10.23 16.47 5.29 0.09 -10.15 16 7 N -0.62 -8.22 3.01 -173.22 -0.52 -8.74 16 8 C 0.06 0.69 5.31 -3.31 -0.02 0.67 16 9 C 0.05 0.50 7.00 37.53 0.26 0.77 16 10 O -0.38 -4.36 10.74 -35.23 -0.38 -4.73 16 11 C 0.05 0.46 6.98 37.31 0.26 0.73 16 12 C 0.08 0.86 6.62 -3.54 -0.02 0.84 16 13 C -0.07 -1.25 7.32 -39.23 -0.29 -1.54 16 14 C -0.15 -2.92 8.69 -39.43 -0.34 -3.27 16 15 C 0.22 4.39 6.42 -83.81 -0.54 3.85 16 16 N -0.69 -14.30 4.95 -11.18 -0.06 -14.36 16 17 C 0.54 13.86 7.54 -13.06 -0.10 13.76 16 18 O -0.55 -15.89 12.12 5.17 0.06 -15.83 16 19 C -0.54 -13.73 9.54 -35.68 -0.34 -14.07 16 20 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 21 C 0.09 2.21 5.50 -17.35 -0.10 2.11 16 22 N -0.76 -20.67 11.82 55.55 0.66 -20.01 16 23 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.07 0.89 6.96 -51.93 -0.36 0.53 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 1.52 4.40 -51.93 -0.23 1.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.12 1.79 6.49 -52.48 -0.34 1.45 16 40 H 0.16 3.66 5.73 -52.48 -0.30 3.35 16 41 H 0.40 7.08 7.32 -40.82 -0.30 6.78 16 42 H 0.27 6.82 8.29 -40.82 -0.34 6.48 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -32.32 345.38 -7.72 -40.04 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.25 Total: 11.10 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.50 Total: 3.99 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.08 Total: -43.11 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.23 Total: -30.71 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.32 -7.72 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357587135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.349 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds