Wall clock time and date at job start Tue Mar 31 2020 13:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37650 * 119.97301 * 2 1 4 4 C 1.39758 * 119.94288 * 179.97438 * 3 2 1 5 5 C 1.47592 * 120.06428 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00503 * 44.88514 * 5 4 3 7 7 N 1.34779 * 119.99983 * 224.88805 * 5 4 3 8 8 C 1.47155 * 120.97999 * 355.49463 * 7 5 4 9 9 C 1.53717 * 108.15805 * 129.43251 * 8 7 5 10 10 O 1.42963 * 109.14687 * 52.54165 * 9 8 7 11 11 C 1.42966 * 114.16372 * 297.28635 * 10 9 8 12 12 C 1.47151 * 120.98313 * 175.78101 * 7 5 4 13 13 C 1.39796 * 119.86979 * 0.02562 * 4 3 2 14 14 C 1.37607 * 119.94034 * 359.69686 * 13 4 3 15 15 C 1.39234 * 119.96873 * 179.97438 * 2 1 3 16 16 N 1.39102 * 119.93826 * 0.02562 * 15 2 1 17 17 C 1.34776 * 119.99869 * 155.80276 * 16 15 2 18 18 O 1.21724 * 120.00322 * 354.51558 * 17 16 15 19 19 C 1.46203 * 119.99500 * 174.50978 * 17 16 15 20 20 H 1.07998 * 120.00335 * 0.27329 * 19 17 16 21 21 C 1.40126 * 119.99617 * 180.02562 * 19 17 16 22 22 N 1.30636 * 120.00089 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99873 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47103 * 60.00058 * 23 21 19 25 25 H 1.48497 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47321 * 300.00163 * 23 21 19 27 27 H 1.08995 * 109.47124 * 270.02820 * 1 2 3 28 28 H 1.09001 * 109.46529 * 30.01965 * 1 2 3 29 29 H 1.08997 * 109.47017 * 150.02451 * 1 2 3 30 30 H 1.08001 * 120.02936 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.68257 * 249.20881 * 8 7 5 32 32 H 1.08994 * 109.68263 * 9.77270 * 8 7 5 33 33 H 1.08995 * 109.66067 * 292.57337 * 9 8 7 34 34 H 1.09003 * 109.48457 * 172.39548 * 9 8 7 35 35 H 1.09000 * 109.51258 * 302.65390 * 11 10 9 36 36 H 1.09003 * 109.55029 * 182.53322 * 11 10 9 37 37 H 1.09001 * 109.68186 * 350.23500 * 12 7 5 38 38 H 1.09004 * 109.68192 * 110.79005 * 12 7 5 39 39 H 1.08004 * 120.02858 * 180.02562 * 13 4 3 40 40 H 1.08004 * 119.97106 * 180.31587 * 14 13 4 41 41 H 0.97003 * 119.99863 * 335.80981 * 16 15 2 42 42 H 0.97001 * 120.00143 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1924 0.0000 4 6 3.5923 1.1917 0.0005 5 6 4.3323 2.4686 0.0000 6 8 3.9915 3.3693 0.7423 7 7 5.3860 2.6365 -0.8235 8 6 5.8782 1.5297 -1.6591 9 6 6.0004 2.0383 -3.1045 10 8 6.7800 3.2367 -3.1155 11 6 6.1978 4.3202 -2.3868 12 6 6.0822 3.9301 -0.9089 13 6 4.2879 -0.0209 0.0005 14 6 3.5953 -1.2100 0.0063 15 6 2.2025 -1.2062 0.0005 16 7 1.5050 -2.4097 0.0005 17 6 2.0885 -3.5267 -0.4774 18 8 3.1861 -3.4642 -1.0000 19 6 1.4031 -4.8134 -0.3680 20 1 0.4274 -4.8682 0.0917 21 6 2.0099 -5.9748 -0.8644 22 7 3.1878 -5.9077 -1.4254 23 14 1.1346 -7.6191 -0.7241 24 1 -0.1606 -7.5537 -1.4477 25 1 1.9812 -8.6831 -1.3209 26 1 0.8869 -7.9274 0.7073 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6547 2.1278 0.0004 31 1 6.8534 1.2028 -1.2983 32 1 5.1741 0.6986 -1.6195 33 1 5.0083 2.2457 -3.5054 34 1 6.4894 1.2804 -3.7165 35 1 5.2064 4.5359 -2.7851 36 1 6.8285 5.2042 -2.4818 37 1 5.5132 4.6893 -0.3722 38 1 7.0776 3.8407 -0.4738 39 1 5.3679 -0.0245 0.0014 40 1 4.1322 -2.1471 0.0115 41 1 0.5987 -2.4450 0.3444 42 1 3.6078 -6.7116 -1.7694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357587135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:04 Heat of formation + Delta-G solvation = -102.332281 kcal Electronic energy + Delta-G solvation = -26550.545978 eV Core-core repulsion = 22687.929792 eV Total energy + Delta-G solvation = -3862.616186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81916 -40.81548 -39.42128 -38.55277 -36.04279 -35.39012 -34.66400 -33.49661 -32.45553 -31.11086 -29.03225 -28.48310 -27.68743 -25.33586 -24.70592 -23.43023 -22.45427 -21.69481 -20.44567 -19.59459 -18.31127 -18.10067 -17.75037 -17.49747 -16.96934 -16.76320 -16.34724 -16.12650 -15.91564 -15.63234 -15.37213 -15.15350 -14.85710 -14.61185 -14.36623 -14.26945 -14.02271 -13.65327 -13.44422 -13.23979 -13.07056 -12.83830 -12.75531 -12.71253 -12.63277 -12.38412 -12.13557 -12.06297 -11.77909 -11.31246 -11.22016 -10.97720 -10.85278 -9.95641 -9.71316 -9.62342 -8.74156 -8.37989 -6.95949 0.02039 0.42881 1.41362 1.41729 1.55310 1.57140 1.78707 2.20149 2.34771 2.77516 2.83102 2.84729 3.40340 3.55455 3.68559 3.83594 3.91765 3.96766 4.05269 4.18796 4.20343 4.23152 4.40096 4.47309 4.59658 4.61913 4.70290 4.74793 4.82469 4.82954 4.87235 4.98137 5.19915 5.23120 5.26105 5.33623 5.41629 5.49272 5.72618 5.78636 6.05214 6.12980 6.14347 6.29091 6.76648 6.96027 7.25581 8.29431 8.53579 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003154 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.564000 B = 8875.091050 C = 9883.968882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.148 4.148 3 C -0.041 4.041 4 C -0.187 4.187 5 C 0.575 3.425 6 O -0.574 6.574 7 N -0.610 5.610 8 C 0.056 3.944 9 C 0.049 3.951 10 O -0.391 6.391 11 C 0.051 3.949 12 C 0.074 3.926 13 C -0.063 4.063 14 C -0.168 4.168 15 C 0.194 3.806 16 N -0.680 5.680 17 C 0.527 3.473 18 O -0.595 6.595 19 C -0.563 4.563 20 H 0.093 0.907 21 C 0.033 3.967 22 N -0.807 5.807 23 Si 0.997 3.003 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.255 1.255 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.409 0.591 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 14.234 -1.146 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.152 4.152 3 C -0.060 4.060 4 C -0.191 4.191 5 C 0.365 3.635 6 O -0.455 6.455 7 N -0.343 5.343 8 C -0.066 4.066 9 C -0.028 4.028 10 O -0.309 6.309 11 C -0.026 4.026 12 C -0.048 4.048 13 C -0.083 4.083 14 C -0.189 4.189 15 C 0.093 3.907 16 N -0.322 5.322 17 C 0.335 3.665 18 O -0.481 6.481 19 C -0.598 4.598 20 H 0.111 0.889 21 C -0.184 4.184 22 N -0.436 5.436 23 Si 0.817 3.183 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.179 1.179 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.246 0.754 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.732 14.563 -1.322 14.726 hybrid contribution -0.662 -1.004 0.364 1.257 sum 1.070 13.559 -0.958 13.635 Atomic orbital electron populations 1.20713 0.88505 1.03614 1.03387 1.19774 0.97813 0.90382 1.07208 1.20821 0.91904 0.97591 0.95729 1.19590 0.94607 0.92203 1.12727 1.18365 0.79277 0.86871 0.78961 1.90717 1.68692 1.44575 1.41527 1.48125 1.30796 1.13602 1.41809 1.23087 1.01739 0.90162 0.91591 1.23136 0.96739 0.87806 0.95111 1.87949 1.48075 1.21634 1.73278 1.23106 0.99951 0.90552 0.89016 1.22465 0.98162 0.85207 0.98930 1.21163 0.99994 0.90239 0.96863 1.21390 0.93653 0.99167 1.04706 1.18289 0.91895 0.86576 0.93947 1.43769 1.18311 1.06744 1.63349 1.18717 0.85786 0.83974 0.78069 1.90545 1.23026 1.86017 1.48470 1.21387 1.06080 0.90804 1.41575 0.88910 1.26921 0.94907 1.04879 0.91694 1.70103 1.14729 1.31397 1.27332 0.85058 0.78638 0.74732 0.79911 1.17784 1.19915 1.17947 0.89751 0.89480 0.91881 0.84100 0.88995 0.87944 0.92641 0.85799 0.92750 0.84837 0.88601 0.89563 0.84242 0.85924 0.75434 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.44 71.24 0.67 -1.90 16 2 C -0.15 -4.79 5.89 -19.76 -0.12 -4.90 16 3 C -0.04 -1.28 9.32 22.50 0.21 -1.07 16 4 C -0.19 -6.06 5.22 -20.06 -0.10 -6.16 16 5 C 0.57 17.98 7.30 86.71 0.63 18.62 16 6 O -0.57 -20.86 16.47 -3.98 -0.07 -20.92 16 7 N -0.61 -15.43 3.01 -820.22 -2.47 -17.90 16 8 C 0.06 1.27 5.31 86.50 0.46 1.73 16 9 C 0.05 0.98 7.00 72.22 0.51 1.49 16 10 O -0.39 -8.02 10.74 -148.98 -1.60 -9.62 16 11 C 0.05 0.85 6.98 72.08 0.50 1.35 16 12 C 0.07 1.49 6.62 86.35 0.57 2.06 16 13 C -0.06 -2.16 7.32 22.50 0.16 -2.00 16 14 C -0.17 -7.01 8.69 22.37 0.19 -6.82 16 15 C 0.19 7.75 6.42 38.48 0.25 7.99 16 16 N -0.68 -29.06 4.95 -307.50 -1.52 -30.59 16 17 C 0.53 28.23 7.54 86.31 0.65 28.88 16 18 O -0.60 -36.09 12.12 -4.43 -0.05 -36.15 16 19 C -0.56 -29.41 9.54 24.80 0.24 -29.17 16 20 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 21 C 0.03 1.71 5.50 85.33 0.47 2.18 16 22 N -0.81 -45.75 11.82 21.85 0.26 -45.49 16 23 Si 1.00 37.90 29.56 68.60 2.03 39.93 16 24 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 25 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 29 H 0.06 1.60 6.96 -2.39 -0.02 1.58 16 30 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.64 4.40 -2.39 -0.01 2.63 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 2.04 7.11 -2.39 -0.02 2.03 16 38 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.14 4.13 6.49 -2.91 -0.02 4.11 16 40 H 0.12 6.09 5.73 -2.91 -0.02 6.08 16 41 H 0.41 14.69 7.32 -92.71 -0.68 14.01 16 42 H 0.28 14.35 8.29 -92.71 -0.77 13.58 16 Total: -1.00 -72.60 345.38 2.26 -70.35 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.39 Total: 38.12 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.30 Total: 12.28 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -3.74 Total: -93.98 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -1.72 Total: -66.69 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -72.60 2.26 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357587135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.987 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds