Wall clock time and date at job start Tue Mar 31 2020 13:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35807 * 117.00348 * 2 1 4 4 C 1.38938 * 119.90281 * 0.25436 * 3 2 1 5 5 C 1.37774 * 120.09235 * 180.29447 * 4 3 2 6 6 C 1.39713 * 119.90285 * 359.73161 * 5 4 3 7 7 C 1.47528 * 120.09247 * 179.97438 * 6 5 4 8 8 N 1.29141 * 125.87422 * 180.02562 * 7 6 5 9 9 O 1.41389 * 112.86230 * 179.67959 * 8 7 6 10 10 C 1.44199 * 107.60079 * 17.49551 * 9 8 7 11 11 H 1.09002 * 110.96618 * 92.73854 * 10 9 8 12 12 C 1.52999 * 110.97574 * 216.46512 * 10 9 8 13 13 N 1.46492 * 109.47151 * 298.55099 * 12 10 9 14 14 C 1.34783 * 120.00112 * 179.97438 * 13 12 10 15 15 O 1.21690 * 119.99286 * 359.97438 * 14 13 12 16 16 C 1.46371 * 120.00144 * 179.97438 * 14 13 12 17 17 H 1.07997 * 119.99887 * 0.02562 * 16 14 13 18 18 C 1.40051 * 119.99662 * 180.02562 * 16 14 13 19 19 N 1.30665 * 120.00115 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99650 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47093 * 90.00134 * 20 18 16 22 22 H 1.48498 * 109.46916 * 209.99949 * 20 18 16 23 23 H 1.48493 * 109.47371 * 330.00174 * 20 18 16 24 24 C 1.51696 * 125.86800 * 359.73313 * 7 6 5 25 25 C 1.39676 * 119.81513 * 359.97438 * 6 5 4 26 26 C 1.37803 * 119.90841 * 0.02562 * 25 6 5 27 27 C 1.50706 * 119.95387 * 179.97438 * 26 25 6 28 28 H 1.08991 * 109.47140 * 59.99916 * 1 2 3 29 29 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46778 * 299.99634 * 1 2 3 31 31 H 1.08001 * 119.95846 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.04328 * 179.70351 * 5 4 3 33 33 H 1.09007 * 109.46416 * 58.55020 * 12 10 9 34 34 H 1.09000 * 109.47323 * 178.54589 * 12 10 9 35 35 H 0.97003 * 120.00102 * 359.97438 * 13 12 10 36 36 H 0.97000 * 119.99951 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.79057 * 282.87227 * 24 7 6 38 38 H 1.08998 * 110.78866 * 46.33821 * 24 7 6 39 39 H 1.08011 * 120.04719 * 180.02562 * 25 6 5 40 40 H 1.09001 * 109.46953 * 90.00088 * 27 26 25 41 41 H 1.09000 * 109.47318 * 209.99686 * 27 26 25 42 42 H 1.09000 * 109.47161 * 330.00316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2870 2.3740 0.0053 5 6 1.9085 3.6036 -0.0008 6 6 3.3036 3.6789 -0.0067 7 6 3.9734 4.9934 -0.0138 8 7 5.2493 5.1925 -0.0201 9 8 5.5911 6.5644 -0.0332 10 6 4.4260 7.3080 0.3777 11 1 4.4357 7.4852 1.4532 12 6 4.3187 8.6267 -0.3906 13 7 5.4936 9.4543 -0.1066 14 6 5.6165 10.6688 -0.6781 15 8 4.7518 11.0775 -1.4304 16 6 6.7902 11.4960 -0.3938 17 1 7.5578 11.1330 0.2735 18 6 6.9176 12.7581 -0.9873 19 7 5.9886 13.1974 -1.7943 20 14 8.4158 13.8135 -0.6251 21 1 9.4822 13.5153 -1.6144 22 1 8.0440 15.2484 -0.7154 23 1 8.9120 13.5159 0.7425 24 6 3.2816 6.3434 -0.0212 25 6 4.0624 2.5062 -0.0058 26 6 3.4328 1.2805 0.0003 27 6 4.2505 0.0145 0.0006 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2086 2.3149 0.0091 32 1 1.3180 4.5078 -0.0014 33 1 4.2690 8.4210 -1.4600 34 1 3.4178 9.1559 -0.0802 35 1 6.1831 9.1283 0.4928 36 1 6.0767 14.0717 -2.2050 37 1 2.9032 6.5788 -1.0160 38 1 2.4790 6.3709 0.7157 39 1 5.1411 2.5601 -0.0100 40 1 4.4518 -0.2877 1.0284 41 1 3.6980 -0.7751 -0.5086 42 1 5.1931 0.1907 -0.5175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374867748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:23 Heat of formation + Delta-G solvation = -36.069391 kcal Electronic energy + Delta-G solvation = -25032.550649 eV Core-core repulsion = 21172.807837 eV Total energy + Delta-G solvation = -3859.742812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79109 -40.00505 -37.91301 -37.13640 -34.06906 -33.50959 -32.69801 -32.29448 -30.68305 -29.88276 -28.06074 -27.33469 -26.71492 -24.97456 -23.33155 -22.28834 -21.40212 -19.95835 -19.41571 -18.44298 -17.28649 -16.98705 -16.70020 -16.25005 -15.83997 -15.37981 -15.27994 -14.69991 -14.44521 -14.09404 -14.07682 -13.95465 -13.71583 -13.54696 -13.17080 -13.04344 -12.64173 -12.58702 -12.41961 -12.27915 -11.96593 -11.83222 -11.73491 -11.46264 -11.27613 -11.15610 -11.04644 -10.87703 -10.57654 -10.41465 -10.19245 -9.65072 -9.20966 -8.82535 -8.27982 -7.61609 -7.51269 -6.16316 -4.60887 0.50123 0.93549 2.07090 2.79704 3.05909 3.17360 3.23785 3.27533 3.41072 3.85492 4.13292 4.26828 4.34668 4.42858 4.48454 4.61398 4.64889 4.68483 4.82863 4.86084 4.89796 5.00810 5.14628 5.17031 5.19636 5.30164 5.38268 5.39465 5.52578 5.59667 5.61842 5.81888 5.83993 5.88164 6.07732 6.09466 6.28153 6.31199 6.40766 6.90156 7.39841 7.46882 7.95444 8.08731 8.35859 9.05446 9.54612 10.61994 10.80166 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.001991 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.999201 B =14059.477696 C =14609.531127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.142 3.858 4 C -0.207 4.207 5 C -0.051 4.051 6 C -0.070 4.070 7 C 0.120 3.880 8 N -0.289 5.289 9 O -0.179 6.179 10 C 0.035 3.965 11 H 0.091 0.909 12 C 0.142 3.858 13 N -0.764 5.764 14 C 0.555 3.445 15 O -0.583 6.583 16 C -0.543 4.543 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.142 4.142 25 C -0.043 4.043 26 C -0.120 4.120 27 C -0.105 4.105 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.268 0.732 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 -26.673 5.825 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.095 3.905 4 C -0.226 4.226 5 C -0.071 4.071 6 C -0.071 4.071 7 C -0.070 4.070 8 N -0.028 5.028 9 O -0.200 6.200 10 C -0.024 4.024 11 H 0.109 0.891 12 C 0.016 3.984 13 N -0.420 5.420 14 C 0.360 3.640 15 O -0.466 6.466 16 C -0.580 4.580 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.398 5.398 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.182 4.182 25 C -0.063 4.063 26 C -0.121 4.121 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.217 0.783 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.111 -26.724 5.077 29.384 hybrid contribution -0.117 1.067 0.509 1.188 sum -11.228 -25.657 5.586 28.558 Atomic orbital electron populations 1.23115 0.78129 1.04168 1.01614 1.86054 1.21536 1.26763 1.88137 1.19027 0.91795 0.84301 0.95336 1.21130 1.00274 0.91799 1.09413 1.21011 0.92814 0.97740 0.95552 1.17682 0.92614 0.88928 1.07875 1.24124 0.92412 0.94492 0.95933 1.78359 1.14732 0.97593 1.12131 1.91331 1.32058 1.09426 1.87180 1.24069 0.84449 0.93549 1.00303 0.89112 1.20960 0.91950 0.87085 0.98439 1.46053 1.22762 1.19489 1.53713 1.18227 0.87498 0.78696 0.79626 1.90591 1.44143 1.72307 1.39595 1.20883 1.05696 1.01314 1.30127 0.91322 1.25716 0.96532 0.97692 0.93324 1.70022 1.30953 1.17029 1.21774 0.86357 0.81815 0.78905 0.79587 1.19718 1.20482 1.18889 1.23037 1.00546 0.89250 1.05329 1.21103 1.00521 0.89814 0.94876 1.19189 0.90564 0.96169 1.06151 1.20627 0.98967 0.94073 1.02540 0.92391 0.88086 0.92413 0.84734 0.84800 0.92460 0.91521 0.78343 0.92140 0.87407 0.87899 0.84182 0.91189 0.91040 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.43 9.52 -19.14 -0.18 -2.61 16 3 C 0.14 1.24 6.67 -39.08 -0.26 0.98 16 4 C -0.21 -1.58 9.02 -39.49 -0.36 -1.94 16 5 C -0.05 -0.43 9.60 -39.20 -0.38 -0.81 16 6 C -0.07 -0.74 5.87 -105.02 -0.62 -1.36 16 7 C 0.12 1.53 7.15 -79.45 -0.57 0.96 16 8 N -0.29 -4.58 12.11 35.28 0.43 -4.16 16 9 O -0.18 -3.23 12.11 -11.37 -0.14 -3.37 16 10 C 0.04 0.54 3.89 -25.73 -0.10 0.44 16 11 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 12 C 0.14 2.75 5.40 -4.05 -0.02 2.72 16 13 N -0.76 -17.88 5.49 -61.72 -0.34 -18.22 16 14 C 0.56 16.27 7.75 -12.99 -0.10 16.16 16 15 O -0.58 -19.21 15.02 5.20 0.08 -19.14 16 16 C -0.54 -15.80 9.54 -35.63 -0.34 -16.14 16 17 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 18 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 19 N -0.77 -23.46 11.83 55.55 0.66 -22.80 16 20 Si 0.91 20.60 29.56 -169.99 -5.02 15.58 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 24 C -0.14 -1.66 5.82 -26.39 -0.15 -1.81 16 25 C -0.04 -0.45 9.32 -39.20 -0.37 -0.81 16 26 C -0.12 -1.12 5.89 -104.54 -0.62 -1.73 16 27 C -0.11 -0.79 9.79 36.01 0.35 -0.44 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 7.64 -51.93 -0.40 -0.21 16 31 H 0.13 0.69 6.28 -52.49 -0.33 0.36 16 32 H 0.13 0.85 7.35 -52.49 -0.39 0.46 16 33 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.38 8.24 8.41 -40.82 -0.34 7.90 16 36 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 37 H 0.11 1.21 7.88 -51.93 -0.41 0.80 16 38 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 39 H 0.14 1.45 7.83 -52.48 -0.41 1.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 42 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -37.52 361.35 -7.25 -44.78 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.55 Total: 4.78 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.63 Total: -0.29 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.75 Total: -45.18 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.24 Total: -25.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.52 -7.25 -44.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374867748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.707 kcal (2) G-P(sol) polarization free energy of solvation -37.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds