Wall clock time and date at job start Tue Mar 31 2020 13:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35807 * 117.00348 * 2 1 4 4 C 1.38938 * 119.90281 * 0.25436 * 3 2 1 5 5 C 1.37774 * 120.09235 * 180.29447 * 4 3 2 6 6 C 1.39713 * 119.90285 * 359.73161 * 5 4 3 7 7 C 1.47528 * 120.09247 * 179.97438 * 6 5 4 8 8 N 1.29141 * 125.87422 * 180.02562 * 7 6 5 9 9 O 1.41389 * 112.86230 * 179.67959 * 8 7 6 10 10 C 1.44199 * 107.60079 * 17.49551 * 9 8 7 11 11 H 1.09002 * 110.96618 * 92.73854 * 10 9 8 12 12 C 1.52999 * 110.97574 * 216.46512 * 10 9 8 13 13 N 1.46492 * 109.47151 * 298.55099 * 12 10 9 14 14 C 1.34783 * 120.00112 * 179.97438 * 13 12 10 15 15 O 1.21690 * 119.99286 * 359.97438 * 14 13 12 16 16 C 1.46371 * 120.00144 * 179.97438 * 14 13 12 17 17 H 1.07997 * 119.99887 * 0.02562 * 16 14 13 18 18 C 1.40051 * 119.99662 * 180.02562 * 16 14 13 19 19 N 1.30665 * 120.00115 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99650 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47093 * 90.00134 * 20 18 16 22 22 H 1.48498 * 109.46916 * 209.99949 * 20 18 16 23 23 H 1.48493 * 109.47371 * 330.00174 * 20 18 16 24 24 C 1.51696 * 125.86800 * 359.73313 * 7 6 5 25 25 C 1.39676 * 119.81513 * 359.97438 * 6 5 4 26 26 C 1.37803 * 119.90841 * 0.02562 * 25 6 5 27 27 C 1.50706 * 119.95387 * 179.97438 * 26 25 6 28 28 H 1.08991 * 109.47140 * 59.99916 * 1 2 3 29 29 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46778 * 299.99634 * 1 2 3 31 31 H 1.08001 * 119.95846 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.04328 * 179.70351 * 5 4 3 33 33 H 1.09007 * 109.46416 * 58.55020 * 12 10 9 34 34 H 1.09000 * 109.47323 * 178.54589 * 12 10 9 35 35 H 0.97003 * 120.00102 * 359.97438 * 13 12 10 36 36 H 0.97000 * 119.99951 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.79057 * 282.87227 * 24 7 6 38 38 H 1.08998 * 110.78866 * 46.33821 * 24 7 6 39 39 H 1.08011 * 120.04719 * 180.02562 * 25 6 5 40 40 H 1.09001 * 109.46953 * 90.00088 * 27 26 25 41 41 H 1.09000 * 109.47318 * 209.99686 * 27 26 25 42 42 H 1.09000 * 109.47161 * 330.00316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2870 2.3740 0.0053 5 6 1.9085 3.6036 -0.0008 6 6 3.3036 3.6789 -0.0067 7 6 3.9734 4.9934 -0.0138 8 7 5.2493 5.1925 -0.0201 9 8 5.5911 6.5644 -0.0332 10 6 4.4260 7.3080 0.3777 11 1 4.4357 7.4852 1.4532 12 6 4.3187 8.6267 -0.3906 13 7 5.4936 9.4543 -0.1066 14 6 5.6165 10.6688 -0.6781 15 8 4.7518 11.0775 -1.4304 16 6 6.7902 11.4960 -0.3938 17 1 7.5578 11.1330 0.2735 18 6 6.9176 12.7581 -0.9873 19 7 5.9886 13.1974 -1.7943 20 14 8.4158 13.8135 -0.6251 21 1 9.4822 13.5153 -1.6144 22 1 8.0440 15.2484 -0.7154 23 1 8.9120 13.5159 0.7425 24 6 3.2816 6.3434 -0.0212 25 6 4.0624 2.5062 -0.0058 26 6 3.4328 1.2805 0.0003 27 6 4.2505 0.0145 0.0006 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2086 2.3149 0.0091 32 1 1.3180 4.5078 -0.0014 33 1 4.2690 8.4210 -1.4600 34 1 3.4178 9.1559 -0.0802 35 1 6.1831 9.1283 0.4928 36 1 6.0767 14.0717 -2.2050 37 1 2.9032 6.5788 -1.0160 38 1 2.4790 6.3709 0.7157 39 1 5.1411 2.5601 -0.0100 40 1 4.4518 -0.2877 1.0284 41 1 3.6980 -0.7751 -0.5086 42 1 5.1931 0.1907 -0.5175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374867748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:22 Heat of formation + Delta-G solvation = -63.233859 kcal Electronic energy + Delta-G solvation = -25033.728589 eV Core-core repulsion = 21172.807837 eV Total energy + Delta-G solvation = -3860.920751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56887 -40.96578 -39.32246 -38.50429 -35.61478 -34.69989 -34.43860 -33.50740 -32.11581 -30.69560 -28.90503 -28.46890 -27.80129 -26.55018 -24.11801 -23.18943 -22.46446 -21.82141 -20.55278 -19.30069 -18.99848 -18.02126 -17.54312 -17.42382 -16.97007 -16.72729 -16.41493 -15.94156 -15.68642 -15.43430 -15.32138 -14.94393 -14.56493 -14.52504 -14.26610 -14.17729 -14.09459 -13.49981 -13.37084 -13.21250 -13.16321 -12.93040 -12.77391 -12.72704 -12.67738 -12.59732 -12.49604 -12.02502 -12.01343 -11.91995 -11.55556 -10.94881 -10.68465 -9.92595 -9.89942 -9.55011 -9.02905 -8.31661 -6.88047 -0.30078 0.28446 1.19669 1.39325 1.41017 1.56440 1.93373 2.23902 2.31134 2.44285 2.69963 2.78398 3.12624 3.33554 3.59316 3.61356 3.75291 3.76732 3.83365 3.98024 4.17987 4.22449 4.38199 4.41237 4.44880 4.49857 4.52858 4.57830 4.73178 4.76312 4.79558 4.81693 4.88687 4.92689 5.22348 5.23600 5.30277 5.35095 5.39657 5.66358 5.84302 6.13966 6.22470 6.33575 6.36240 6.84416 7.47214 8.44387 8.64211 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.001991 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.999201 B =14059.477696 C =14609.531127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.143 3.857 4 C -0.205 4.205 5 C -0.041 4.041 6 C -0.096 4.096 7 C 0.144 3.856 8 N -0.329 5.329 9 O -0.221 6.221 10 C 0.040 3.960 11 H 0.106 0.894 12 C 0.143 3.857 13 N -0.755 5.755 14 C 0.538 3.462 15 O -0.631 6.631 16 C -0.574 4.574 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.820 5.820 20 Si 1.000 3.000 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.250 1.250 24 C -0.135 4.135 25 C -0.052 4.052 26 C -0.135 4.135 27 C -0.104 4.104 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.276 0.724 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -27.758 7.017 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.096 3.904 4 C -0.224 4.224 5 C -0.061 4.061 6 C -0.098 4.098 7 C -0.045 4.045 8 N -0.072 5.072 9 O -0.239 6.239 10 C -0.019 4.019 11 H 0.123 0.877 12 C 0.018 3.982 13 N -0.410 5.410 14 C 0.343 3.657 15 O -0.519 6.519 16 C -0.611 4.611 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.449 5.449 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.173 1.173 24 C -0.174 4.174 25 C -0.072 4.072 26 C -0.136 4.136 27 C -0.160 4.160 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.252 -27.852 6.300 31.073 hybrid contribution 0.051 1.160 0.124 1.168 sum -12.201 -26.692 6.425 30.043 Atomic orbital electron populations 1.23434 0.76084 1.05826 1.02682 1.86050 1.23665 1.26365 1.87704 1.19213 0.91765 0.85220 0.94175 1.21460 1.01746 0.90930 1.08232 1.21303 0.91775 0.99197 0.93823 1.17772 0.93723 0.87747 1.10513 1.24555 0.91727 0.95774 0.92409 1.78411 1.16542 0.95859 1.16384 1.91289 1.33531 1.11107 1.87990 1.23983 0.85748 0.91952 1.00185 0.87667 1.21057 0.90419 0.88775 0.97969 1.45761 1.24147 1.18395 1.52664 1.18592 0.87370 0.80279 0.79500 1.90540 1.45648 1.73919 1.41755 1.21427 1.06273 1.02406 1.30991 0.89711 1.26990 1.00347 0.99003 0.92367 1.70174 1.33784 1.18002 1.22982 0.84996 0.76508 0.76554 0.80083 1.18759 1.19365 1.17291 1.23085 1.00111 0.87264 1.06988 1.21098 1.00221 0.90498 0.95394 1.19367 0.91468 0.96221 1.06553 1.20634 0.98928 0.93513 1.02959 0.91350 0.86366 0.91187 0.81751 0.82212 0.94551 0.91063 0.77225 0.91438 0.86651 0.83731 0.85295 0.90649 0.90801 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.29 9.52 -91.38 -0.87 -5.16 16 3 C 0.14 2.20 6.67 22.59 0.15 2.35 16 4 C -0.21 -2.45 9.02 22.33 0.20 -2.25 16 5 C -0.04 -0.56 9.60 22.52 0.22 -0.35 16 6 C -0.10 -1.92 5.87 -20.12 -0.12 -2.03 16 7 C 0.14 3.55 7.15 45.72 0.33 3.87 16 8 N -0.33 -10.63 12.11 -42.28 -0.51 -11.14 16 9 O -0.22 -8.20 12.11 -38.31 -0.46 -8.66 16 10 C 0.04 1.21 3.89 31.24 0.12 1.33 16 11 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 12 C 0.14 5.66 5.40 86.38 0.47 6.13 16 13 N -0.76 -36.31 5.49 -467.41 -2.56 -38.87 16 14 C 0.54 32.55 7.75 86.36 0.67 33.22 16 15 O -0.63 -43.27 15.02 -4.32 -0.06 -43.34 16 16 C -0.57 -33.95 9.54 24.83 0.24 -33.71 16 17 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 18 C 0.03 1.61 5.50 85.31 0.47 2.08 16 19 N -0.82 -51.18 11.83 21.84 0.26 -50.92 16 20 Si 1.00 42.18 29.56 68.60 2.03 44.21 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 24 C -0.14 -2.91 5.82 30.81 0.18 -2.73 16 25 C -0.05 -1.07 9.32 22.51 0.21 -0.86 16 26 C -0.14 -2.40 5.89 -19.81 -0.12 -2.52 16 27 C -0.10 -1.50 9.79 71.24 0.70 -0.80 16 28 H 0.07 0.22 7.66 -2.39 -0.02 0.20 16 29 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.20 7.64 -2.39 -0.02 0.18 16 31 H 0.17 0.93 6.28 -2.91 -0.02 0.91 16 32 H 0.16 1.31 7.35 -2.91 -0.02 1.29 16 33 H 0.04 1.58 8.09 -2.38 -0.02 1.56 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.39 17.28 8.41 -92.71 -0.78 16.50 16 36 H 0.28 15.49 8.29 -92.71 -0.77 14.72 16 37 H 0.12 2.38 7.88 -2.39 -0.02 2.36 16 38 H 0.14 1.92 7.94 -2.39 -0.02 1.90 16 39 H 0.13 2.82 7.83 -2.90 -0.02 2.80 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.01 7.51 -2.39 -0.02 0.99 16 42 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 Total: -1.00 -85.50 361.35 2.91 -82.59 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.28 Total: 26.39 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.82 Total: 4.92 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -2.82 Total: -100.94 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -1.40 Total: -57.17 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -85.50 2.91 -82.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374867748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.357 kcal (2) G-P(sol) polarization free energy of solvation -85.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds