Wall clock time and date at job start Tue Mar 31 2020 13:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35806 * 117.00002 * 2 1 4 4 C 1.38938 * 119.90640 * 359.72204 * 3 2 1 5 5 C 1.37768 * 120.09619 * 179.76646 * 4 3 2 6 6 C 1.39717 * 119.89869 * 0.50887 * 5 4 3 7 7 C 1.47530 * 120.09209 * 179.76415 * 6 5 4 8 8 N 1.29148 * 125.87364 * 180.02562 * 7 6 5 9 9 O 1.41384 * 112.86014 * 180.30090 * 8 7 6 10 10 C 1.44203 * 107.60024 * 342.50150 * 9 8 7 11 11 H 1.09007 * 110.96870 * 267.30348 * 10 9 8 12 12 C 1.52997 * 110.97293 * 143.57463 * 10 9 8 13 13 N 1.46498 * 109.47512 * 66.45180 * 12 10 9 14 14 C 1.34779 * 120.00200 * 180.02562 * 13 12 10 15 15 O 1.21690 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.46370 * 120.00107 * 179.97438 * 14 13 12 17 17 H 1.08001 * 119.99912 * 359.97438 * 16 14 13 18 18 C 1.40047 * 120.00166 * 180.02562 * 16 14 13 19 19 N 1.30666 * 120.00058 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99975 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46987 * 120.00346 * 20 18 16 23 23 H 1.48505 * 109.47244 * 239.99803 * 20 18 16 24 24 C 1.51691 * 125.86507 * 359.69742 * 7 6 5 25 25 C 1.39680 * 119.82108 * 359.74495 * 6 5 4 26 26 C 1.37811 * 119.90099 * 0.02562 * 25 6 5 27 27 C 1.50699 * 119.95014 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.47382 * 300.00228 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00336 * 1 2 3 31 31 H 1.08001 * 119.95154 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.04881 * 180.27514 * 5 4 3 33 33 H 1.09005 * 109.47149 * 186.45537 * 12 10 9 34 34 H 1.09003 * 109.47091 * 306.44648 * 12 10 9 35 35 H 0.97000 * 119.99764 * 359.97438 * 13 12 10 36 36 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 37 37 H 1.08994 * 110.79289 * 313.67688 * 24 7 6 38 38 H 1.09001 * 110.79109 * 77.15358 * 24 7 6 39 39 H 1.07998 * 120.04991 * 179.97438 * 25 6 5 40 40 H 1.09006 * 109.46865 * 270.01838 * 27 26 25 41 41 H 1.08998 * 109.47549 * 30.02054 * 27 26 25 42 42 H 1.09002 * 109.46973 * 150.02035 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2870 2.3740 -0.0058 5 6 1.9083 3.6036 -0.0010 6 6 3.3035 3.6789 -0.0010 7 6 3.9733 4.9934 -0.0011 8 7 5.2493 5.1926 -0.0015 9 8 5.5911 6.5645 0.0054 10 6 4.4240 7.3066 -0.4026 11 1 4.4282 7.4796 -1.4789 12 6 4.3209 8.6283 0.3611 13 7 5.4318 9.5025 -0.0233 14 6 5.5467 10.7277 0.5265 15 8 4.7279 11.1076 1.3427 16 6 6.6570 11.6009 0.1428 17 1 7.3843 11.2633 -0.5806 18 6 6.7767 12.8737 0.7145 19 7 5.8969 13.2820 1.5902 20 14 8.1940 13.9878 0.2253 21 1 9.0451 13.2956 -0.7755 22 1 7.6579 15.2417 -0.3625 23 1 9.0062 14.3117 1.4257 24 6 3.2815 6.3434 -0.0077 25 6 4.0624 2.5063 -0.0004 26 6 3.4327 1.2804 -0.0005 27 6 4.2504 0.0146 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 0.2086 2.3148 -0.0100 32 1 1.3179 4.5079 -0.0011 33 1 3.3756 9.1146 0.1199 34 1 4.3660 8.4333 1.4326 35 1 6.0851 9.1993 -0.6731 36 1 5.9800 14.1635 1.9865 37 1 2.4823 6.3650 -0.7485 38 1 2.8987 6.5868 0.9834 39 1 5.1410 2.5602 -0.0008 40 1 4.4479 -0.2904 -1.0283 41 1 5.1950 0.1921 0.5136 42 1 3.6998 -0.7736 0.5130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374867749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:27 Heat of formation + Delta-G solvation = -36.349386 kcal Electronic energy + Delta-G solvation = -25017.350112 eV Core-core repulsion = 21157.595158 eV Total energy + Delta-G solvation = -3859.754953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79395 -40.01320 -37.91425 -37.14563 -34.06955 -33.51972 -32.70406 -32.30240 -30.69506 -29.88755 -28.06183 -27.33578 -26.72319 -24.97402 -23.33776 -22.28931 -21.40158 -19.94701 -19.46253 -18.44424 -17.29831 -16.96515 -16.70313 -16.25106 -15.84328 -15.38873 -15.28973 -14.70184 -14.43808 -14.09712 -14.06600 -13.95317 -13.72671 -13.54729 -13.16838 -13.04980 -12.64699 -12.59082 -12.42125 -12.28863 -11.96685 -11.85171 -11.74852 -11.46029 -11.28029 -11.16490 -11.03530 -10.90385 -10.57554 -10.42545 -10.16790 -9.65045 -9.21106 -8.83867 -8.28176 -7.61870 -7.52132 -6.16948 -4.61455 0.49883 0.93384 2.06821 2.79603 3.06188 3.15494 3.23607 3.28704 3.40873 3.85006 4.12853 4.26680 4.34599 4.42824 4.48066 4.60887 4.64810 4.68366 4.82797 4.85882 4.89694 5.00698 5.14484 5.16614 5.19384 5.30201 5.38099 5.39301 5.52389 5.59213 5.61602 5.81280 5.83753 5.87993 6.07451 6.09171 6.27824 6.31036 6.41301 6.90010 7.39867 7.46467 7.94383 8.07911 8.35433 9.05043 9.53756 10.61389 10.79592 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.001979 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.841261 B =14143.942756 C =14679.032266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.142 3.858 4 C -0.207 4.207 5 C -0.051 4.051 6 C -0.070 4.070 7 C 0.120 3.880 8 N -0.289 5.289 9 O -0.179 6.179 10 C 0.035 3.965 11 H 0.090 0.910 12 C 0.142 3.858 13 N -0.764 5.764 14 C 0.555 3.445 15 O -0.583 6.583 16 C -0.543 4.543 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.908 3.092 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.142 4.142 25 C -0.043 4.043 26 C -0.120 4.120 27 C -0.105 4.105 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.384 0.616 36 H 0.267 0.733 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 -26.849 -5.419 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.095 3.905 4 C -0.226 4.226 5 C -0.071 4.071 6 C -0.071 4.071 7 C -0.069 4.069 8 N -0.029 5.029 9 O -0.200 6.200 10 C -0.023 4.023 11 H 0.108 0.892 12 C 0.016 3.984 13 N -0.421 5.421 14 C 0.359 3.641 15 O -0.466 6.466 16 C -0.580 4.580 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.398 5.398 20 Si 0.733 3.267 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.182 4.182 25 C -0.063 4.063 26 C -0.121 4.121 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.216 0.784 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.926 -26.927 -4.625 29.425 hybrid contribution -0.178 1.115 -0.592 1.275 sum -11.103 -25.812 -5.217 28.579 Atomic orbital electron populations 1.23118 0.78127 1.04169 1.01616 1.86055 1.21538 1.26759 1.88134 1.19027 0.91794 0.84303 0.95332 1.21128 1.00278 0.91798 1.09408 1.21011 0.92812 0.97743 0.95542 1.17684 0.92615 0.88921 1.07891 1.24123 0.92395 0.94475 0.95907 1.78357 1.14734 0.97598 1.12171 1.91337 1.31924 1.09459 1.87297 1.23995 0.84420 0.93560 1.00370 0.89197 1.20942 0.92917 0.86451 0.98108 1.46067 1.29060 1.17503 1.49427 1.18234 0.86334 0.78913 0.80585 1.90593 1.45243 1.74216 1.36545 1.20920 1.10704 0.99694 1.26688 0.91274 1.25718 0.96131 0.98006 0.93427 1.70032 1.31463 1.17485 1.20785 0.86304 0.81395 0.79924 0.79067 1.18725 1.20184 1.20155 1.22967 1.00577 0.89295 1.05366 1.21104 1.00516 0.89813 0.94875 1.19190 0.90565 0.96168 1.06154 1.20626 0.98963 0.94073 1.02541 0.92395 0.88085 0.92404 0.84732 0.84794 0.91498 0.92365 0.78395 0.92185 0.87848 0.87446 0.84183 0.91187 0.91309 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.43 9.52 -19.13 -0.18 -2.61 16 3 C 0.14 1.24 6.67 -39.08 -0.26 0.98 16 4 C -0.21 -1.58 9.02 -39.49 -0.36 -1.93 16 5 C -0.05 -0.43 9.60 -39.20 -0.38 -0.80 16 6 C -0.07 -0.74 5.87 -105.02 -0.62 -1.36 16 7 C 0.12 1.54 7.16 -79.45 -0.57 0.97 16 8 N -0.29 -4.59 12.11 35.28 0.43 -4.16 16 9 O -0.18 -3.23 12.22 -11.37 -0.14 -3.37 16 10 C 0.04 0.54 3.83 -25.91 -0.10 0.44 16 11 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 12 C 0.14 2.75 5.37 -4.04 -0.02 2.73 16 13 N -0.76 -17.83 5.54 -61.72 -0.34 -18.17 16 14 C 0.56 16.23 7.75 -12.99 -0.10 16.13 16 15 O -0.58 -19.19 15.02 5.20 0.08 -19.11 16 16 C -0.54 -15.76 9.54 -35.63 -0.34 -16.10 16 17 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 18 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 19 N -0.77 -23.43 11.83 55.55 0.66 -22.78 16 20 Si 0.91 20.56 29.56 -169.99 -5.02 15.54 16 21 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.14 -1.66 5.81 -26.57 -0.15 -1.82 16 25 C -0.04 -0.45 9.33 -39.20 -0.37 -0.81 16 26 C -0.12 -1.11 5.89 -104.54 -0.62 -1.73 16 27 C -0.11 -0.79 9.78 36.01 0.35 -0.43 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 7.64 -51.93 -0.40 -0.21 16 31 H 0.13 0.68 6.28 -52.49 -0.33 0.35 16 32 H 0.13 0.85 7.37 -52.49 -0.39 0.46 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.38 8.16 8.45 -40.82 -0.35 7.82 16 36 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 37 H 0.10 0.89 7.96 -51.93 -0.41 0.48 16 38 H 0.11 1.20 7.91 -51.93 -0.41 0.78 16 39 H 0.14 1.45 7.83 -52.49 -0.41 1.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.07 0.52 7.52 -51.93 -0.39 0.12 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -37.53 361.59 -7.26 -44.80 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.56 Total: 4.70 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.63 Total: -0.28 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.74 Total: -45.11 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.24 Total: -25.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.53 -7.26 -44.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374867749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.446 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds