Wall clock time and date at job start Tue Mar 31 2020 13:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35806 * 117.00002 * 2 1 4 4 C 1.38938 * 119.90640 * 359.72204 * 3 2 1 5 5 C 1.37768 * 120.09619 * 179.76646 * 4 3 2 6 6 C 1.39717 * 119.89869 * 0.50887 * 5 4 3 7 7 C 1.47530 * 120.09209 * 179.76415 * 6 5 4 8 8 N 1.29148 * 125.87364 * 180.02562 * 7 6 5 9 9 O 1.41384 * 112.86014 * 180.30090 * 8 7 6 10 10 C 1.44203 * 107.60024 * 342.50150 * 9 8 7 11 11 H 1.09007 * 110.96870 * 267.30348 * 10 9 8 12 12 C 1.52997 * 110.97293 * 143.57463 * 10 9 8 13 13 N 1.46498 * 109.47512 * 66.45180 * 12 10 9 14 14 C 1.34779 * 120.00200 * 180.02562 * 13 12 10 15 15 O 1.21690 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.46370 * 120.00107 * 179.97438 * 14 13 12 17 17 H 1.08001 * 119.99912 * 359.97438 * 16 14 13 18 18 C 1.40047 * 120.00166 * 180.02562 * 16 14 13 19 19 N 1.30666 * 120.00058 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99975 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46987 * 120.00346 * 20 18 16 23 23 H 1.48505 * 109.47244 * 239.99803 * 20 18 16 24 24 C 1.51691 * 125.86507 * 359.69742 * 7 6 5 25 25 C 1.39680 * 119.82108 * 359.74495 * 6 5 4 26 26 C 1.37811 * 119.90099 * 0.02562 * 25 6 5 27 27 C 1.50699 * 119.95014 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.47382 * 300.00228 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00336 * 1 2 3 31 31 H 1.08001 * 119.95154 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.04881 * 180.27514 * 5 4 3 33 33 H 1.09005 * 109.47149 * 186.45537 * 12 10 9 34 34 H 1.09003 * 109.47091 * 306.44648 * 12 10 9 35 35 H 0.97000 * 119.99764 * 359.97438 * 13 12 10 36 36 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 37 37 H 1.08994 * 110.79289 * 313.67688 * 24 7 6 38 38 H 1.09001 * 110.79109 * 77.15358 * 24 7 6 39 39 H 1.07998 * 120.04991 * 179.97438 * 25 6 5 40 40 H 1.09006 * 109.46865 * 270.01838 * 27 26 25 41 41 H 1.08998 * 109.47549 * 30.02054 * 27 26 25 42 42 H 1.09002 * 109.46973 * 150.02035 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2870 2.3740 -0.0058 5 6 1.9083 3.6036 -0.0010 6 6 3.3035 3.6789 -0.0010 7 6 3.9733 4.9934 -0.0011 8 7 5.2493 5.1926 -0.0015 9 8 5.5911 6.5645 0.0054 10 6 4.4240 7.3066 -0.4026 11 1 4.4282 7.4796 -1.4789 12 6 4.3209 8.6283 0.3611 13 7 5.4318 9.5025 -0.0233 14 6 5.5467 10.7277 0.5265 15 8 4.7279 11.1076 1.3427 16 6 6.6570 11.6009 0.1428 17 1 7.3843 11.2633 -0.5806 18 6 6.7767 12.8737 0.7145 19 7 5.8969 13.2820 1.5902 20 14 8.1940 13.9878 0.2253 21 1 9.0451 13.2956 -0.7755 22 1 7.6579 15.2417 -0.3625 23 1 9.0062 14.3117 1.4257 24 6 3.2815 6.3434 -0.0077 25 6 4.0624 2.5063 -0.0004 26 6 3.4327 1.2804 -0.0005 27 6 4.2504 0.0146 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 0.2086 2.3148 -0.0100 32 1 1.3179 4.5079 -0.0011 33 1 3.3756 9.1146 0.1199 34 1 4.3660 8.4333 1.4326 35 1 6.0851 9.1993 -0.6731 36 1 5.9800 14.1635 1.9865 37 1 2.4823 6.3650 -0.7485 38 1 2.8987 6.5868 0.9834 39 1 5.1410 2.5602 -0.0008 40 1 4.4479 -0.2904 -1.0283 41 1 5.1950 0.1921 0.5136 42 1 3.6998 -0.7736 0.5130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374867749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:27 Heat of formation + Delta-G solvation = -63.558785 kcal Electronic energy + Delta-G solvation = -25018.530000 eV Core-core repulsion = 21157.595158 eV Total energy + Delta-G solvation = -3860.934841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57376 -40.97009 -39.32812 -38.50540 -35.61974 -34.70297 -34.44597 -33.51137 -32.12674 -30.69769 -28.91197 -28.46876 -27.80036 -26.55295 -24.12258 -23.18831 -22.46266 -21.82715 -20.58026 -19.30379 -18.99812 -18.00927 -17.54570 -17.42477 -16.97525 -16.72711 -16.42056 -15.93799 -15.66579 -15.44955 -15.32233 -14.94876 -14.56227 -14.52491 -14.27594 -14.17820 -14.08438 -13.51546 -13.37699 -13.22790 -13.15496 -12.93061 -12.78774 -12.73463 -12.68963 -12.60190 -12.49871 -12.02012 -11.98826 -11.92103 -11.55562 -10.96248 -10.68450 -9.92510 -9.89955 -9.55625 -9.02969 -8.31981 -6.88277 -0.30211 0.28430 1.19545 1.39173 1.39735 1.57929 1.93787 2.23692 2.31152 2.44037 2.69789 2.77916 3.11740 3.33220 3.59265 3.62337 3.74489 3.76256 3.83263 3.98577 4.17969 4.22508 4.38130 4.41118 4.44863 4.49664 4.52345 4.56875 4.73264 4.76629 4.79577 4.81697 4.88693 4.92607 5.22322 5.23593 5.30417 5.35060 5.39619 5.66341 5.84062 6.13780 6.22342 6.33129 6.36142 6.84368 7.46920 8.44190 8.64117 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.001979 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.841261 B =14143.942756 C =14679.032266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.143 3.857 4 C -0.205 4.205 5 C -0.041 4.041 6 C -0.096 4.096 7 C 0.144 3.856 8 N -0.329 5.329 9 O -0.222 6.222 10 C 0.040 3.960 11 H 0.104 0.896 12 C 0.144 3.856 13 N -0.755 5.755 14 C 0.538 3.462 15 O -0.631 6.631 16 C -0.574 4.574 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.820 5.820 20 Si 1.000 3.000 21 H -0.249 1.249 22 H -0.265 1.265 23 H -0.268 1.268 24 C -0.136 4.136 25 C -0.052 4.052 26 C -0.135 4.135 27 C -0.104 4.104 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.395 0.605 36 H 0.276 0.724 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -27.896 -6.708 31.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.096 3.904 4 C -0.224 4.224 5 C -0.061 4.061 6 C -0.098 4.098 7 C -0.044 4.044 8 N -0.072 5.072 9 O -0.240 6.240 10 C -0.018 4.018 11 H 0.122 0.878 12 C 0.018 3.982 13 N -0.410 5.410 14 C 0.343 3.657 15 O -0.519 6.519 16 C -0.610 4.610 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.450 5.450 20 Si 0.819 3.181 21 H -0.172 1.172 22 H -0.189 1.189 23 H -0.193 1.193 24 C -0.175 4.175 25 C -0.072 4.072 26 C -0.136 4.136 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.143 -28.017 -5.946 31.109 hybrid contribution 0.018 1.196 -0.171 1.208 sum -12.125 -26.822 -6.117 30.064 Atomic orbital electron populations 1.23437 0.76083 1.05826 1.02684 1.86051 1.23665 1.26361 1.87701 1.19213 0.91766 0.85221 0.94168 1.21458 1.01748 0.90929 1.08231 1.21303 0.91773 0.99198 0.93814 1.17773 0.93721 0.87737 1.10533 1.24555 0.91710 0.95760 0.92374 1.78410 1.16543 0.95842 1.16439 1.91295 1.33403 1.11159 1.88106 1.23899 0.85724 0.91972 1.00248 0.87791 1.21028 0.91619 0.88058 0.97462 1.45772 1.30133 1.16483 1.48600 1.18599 0.86192 0.80566 0.80392 1.90541 1.46844 1.75785 1.38684 1.21458 1.11270 1.00771 1.27544 0.89670 1.26993 0.99395 0.99602 0.92737 1.70181 1.34089 1.18546 1.22166 0.84944 0.76834 0.77240 0.79084 1.17222 1.18919 1.19316 1.23018 1.00100 0.87313 1.07066 1.21100 1.00219 0.90494 0.95386 1.19367 0.91467 0.96221 1.06555 1.20633 0.98929 0.93513 1.02957 0.91349 0.86366 0.91184 0.81753 0.82212 0.90985 0.94622 0.77214 0.91440 0.83708 0.86622 0.85289 0.90655 0.91099 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.28 9.52 -91.37 -0.87 -5.15 16 3 C 0.14 2.19 6.67 22.59 0.15 2.34 16 4 C -0.21 -2.44 9.02 22.33 0.20 -2.24 16 5 C -0.04 -0.56 9.60 22.52 0.22 -0.35 16 6 C -0.10 -1.91 5.87 -20.12 -0.12 -2.03 16 7 C 0.14 3.56 7.16 45.72 0.33 3.89 16 8 N -0.33 -10.64 12.11 -42.28 -0.51 -11.15 16 9 O -0.22 -8.23 12.22 -38.30 -0.47 -8.70 16 10 C 0.04 1.22 3.83 31.13 0.12 1.34 16 11 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 12 C 0.14 5.69 5.37 86.38 0.46 6.15 16 13 N -0.76 -36.17 5.54 -467.41 -2.59 -38.76 16 14 C 0.54 32.48 7.75 86.36 0.67 33.15 16 15 O -0.63 -43.25 15.02 -4.32 -0.06 -43.32 16 16 C -0.57 -33.83 9.54 24.83 0.24 -33.60 16 17 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 18 C 0.03 1.59 5.50 85.31 0.47 2.06 16 19 N -0.82 -51.16 11.83 21.83 0.26 -50.90 16 20 Si 1.00 42.11 29.56 68.60 2.03 44.14 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 C -0.14 -2.92 5.81 30.70 0.18 -2.74 16 25 C -0.05 -1.06 9.33 22.52 0.21 -0.85 16 26 C -0.14 -2.39 5.89 -19.81 -0.12 -2.51 16 27 C -0.10 -1.49 9.78 71.24 0.70 -0.79 16 28 H 0.07 0.22 7.66 -2.39 -0.02 0.20 16 29 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.20 7.64 -2.38 -0.02 0.18 16 31 H 0.17 0.93 6.28 -2.91 -0.02 0.91 16 32 H 0.16 1.30 7.37 -2.91 -0.02 1.28 16 33 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.39 17.11 8.45 -92.71 -0.78 16.32 16 36 H 0.28 15.44 8.29 -92.71 -0.77 14.67 16 37 H 0.14 1.93 7.96 -2.39 -0.02 1.91 16 38 H 0.12 2.37 7.91 -2.39 -0.02 2.35 16 39 H 0.13 2.82 7.83 -2.91 -0.02 2.79 16 40 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 42 H 0.07 1.00 7.52 -2.39 -0.02 0.99 16 Total: -1.00 -85.55 361.59 2.87 -82.68 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.27 Total: 26.16 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 4.82 Total: 5.00 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -2.84 Total: -100.81 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.40 Total: -57.17 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -85.55 2.87 -82.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374867749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.124 kcal (2) G-P(sol) polarization free energy of solvation -85.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds