Wall clock time and date at job start Tue Mar 31 2020 12:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47169 * 240.00423 * 3 2 1 5 5 H 1.48500 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47365 * 120.00481 * 3 2 1 7 7 C 1.37886 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99721 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.46492 * 120.00199 * 264.29814 * 10 9 7 12 12 C 1.50701 * 109.46916 * 270.00153 * 11 10 9 13 13 C 1.38672 * 120.42011 * 90.00149 * 12 11 10 14 14 C 1.38636 * 118.42250 * 179.97438 * 13 12 11 15 15 C 1.38224 * 119.15887 * 0.02562 * 14 13 12 16 16 N 1.31861 * 120.76359 * 359.97438 * 15 14 13 17 17 C 1.31880 * 121.72619 * 359.70776 * 16 15 14 18 18 C 1.34776 * 120.00014 * 84.29988 * 10 9 7 19 19 O 1.21276 * 120.00523 * 184.92509 * 18 10 9 20 20 C 1.50707 * 119.99944 * 4.92171 * 18 10 9 21 21 H 1.09002 * 112.90636 * 357.09651 * 20 18 10 22 22 C 1.53774 * 113.61434 * 128.34473 * 20 18 10 23 23 C 1.53781 * 87.08397 * 89.11736 * 22 20 18 24 24 C 1.53775 * 87.07776 * 25.43319 * 23 22 20 25 25 H 1.09000 * 113.61617 * 89.20460 * 24 23 22 26 26 C 1.50705 * 113.61608 * 220.01883 * 24 23 22 27 27 O 1.20823 * 120.00100 * 130.25553 * 26 24 23 28 28 O 1.34228 * 119.99762 * 310.26671 * 26 24 23 29 29 H 0.97004 * 119.99246 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47480 * 60.00808 * 9 7 2 31 31 H 1.09001 * 109.47635 * 300.00106 * 9 7 2 32 32 H 1.09002 * 109.47360 * 29.99519 * 11 10 9 33 33 H 1.08997 * 109.47415 * 149.99923 * 11 10 9 34 34 H 1.07991 * 120.78877 * 359.97438 * 13 12 11 35 35 H 1.07998 * 120.42191 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.61910 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.62030 * 180.30478 * 17 16 15 38 38 H 1.09004 * 113.61868 * 334.56452 * 22 20 18 39 39 H 1.09007 * 113.61656 * 203.66500 * 22 20 18 40 40 H 1.08998 * 113.61278 * 270.88407 * 23 22 20 41 41 H 1.08995 * 113.69032 * 139.99345 * 23 22 20 42 42 H 0.96698 * 116.99823 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.5830 -4.2515 -1.2629 12 6 1.6387 -5.3891 -1.5546 13 6 0.4806 -5.1706 -2.2855 14 6 -0.3583 -6.2468 -2.5301 15 6 -0.0152 -7.4930 -2.0403 16 7 1.0944 -7.6639 -1.3488 17 6 1.9188 -6.6645 -1.1023 18 6 2.7288 -4.0497 1.1609 19 8 3.5830 -4.9105 1.1540 20 6 2.2556 -3.4684 2.4683 21 1 1.5247 -2.6703 2.3380 22 6 1.8316 -4.5300 3.4969 23 6 3.2945 -4.5419 3.9706 24 6 3.3986 -3.1058 3.4310 25 1 3.1300 -2.3438 4.1627 26 6 4.7039 -2.8151 2.7360 27 8 4.7046 -2.3041 1.6411 28 8 5.8656 -3.1242 3.3332 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.5315 -3.5206 -2.0699 33 1 3.6003 -4.6348 -1.1843 34 1 0.2381 -4.1854 -2.6554 35 1 -1.2687 -6.1131 -3.0954 36 1 -0.6632 -8.3367 -2.2268 37 1 2.8210 -6.8438 -0.5364 38 1 1.5104 -5.4697 3.0475 39 1 1.1330 -4.1575 4.2462 40 1 3.9208 -5.2559 3.4358 41 1 3.4038 -4.6107 5.0529 42 1 6.6766 -2.9192 2.8483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397013423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:51 Heat of formation + Delta-G solvation = -64.375406 kcal Electronic energy + Delta-G solvation = -27790.467053 eV Core-core repulsion = 23929.496800 eV Total energy + Delta-G solvation = -3860.970253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81464 -39.92860 -38.84271 -36.95896 -35.57104 -35.09519 -32.99741 -32.07856 -31.34997 -27.70796 -27.18111 -26.82739 -25.01910 -23.41198 -22.80481 -22.05322 -21.70630 -20.23529 -17.89755 -17.58255 -16.97911 -16.84909 -16.41825 -16.12423 -16.00852 -15.29971 -15.05027 -14.93409 -14.43130 -14.22584 -14.02923 -13.51001 -13.41521 -12.90178 -12.81099 -12.49955 -12.44647 -12.31834 -11.83281 -11.69473 -11.46257 -11.38150 -11.20584 -11.05615 -10.91281 -10.80050 -10.63227 -10.20557 -9.94023 -9.83244 -9.70546 -9.55359 -9.25448 -9.07668 -8.71746 -8.48842 -7.75682 -6.14209 -4.18489 1.30040 1.51122 2.71638 3.24540 3.28219 3.31770 3.37847 3.45194 3.76861 4.18336 4.38138 4.63575 4.65578 4.80755 5.01101 5.05960 5.08152 5.19202 5.21886 5.24498 5.31412 5.53095 5.68414 5.69275 5.79947 5.91476 5.97744 6.07046 6.08975 6.18371 6.19248 6.24176 6.33762 6.54515 6.59776 6.70633 6.91573 6.93545 7.16085 7.50088 7.85978 8.10806 8.17408 8.28731 8.37481 8.88535 9.02622 9.48970 10.92937 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.006325 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.671620 B = 4425.721357 C = 6409.932958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.239 3.761 10 N -0.581 5.581 11 C 0.161 3.839 12 C -0.144 4.144 13 C -0.059 4.059 14 C -0.178 4.178 15 C 0.088 3.912 16 N -0.492 5.492 17 C 0.115 3.885 18 C 0.551 3.449 19 O -0.573 6.573 20 C -0.117 4.117 21 H 0.122 0.878 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.083 4.083 25 H 0.130 0.870 26 C 0.484 3.516 27 O -0.485 6.485 28 O -0.522 6.522 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -8.860 2.932 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.120 3.880 10 N -0.309 5.309 11 C 0.037 3.963 12 C -0.147 4.147 13 C -0.086 4.086 14 C -0.197 4.197 15 C -0.069 4.069 16 N -0.200 5.200 17 C -0.042 4.042 18 C 0.339 3.661 19 O -0.455 6.455 20 C -0.138 4.138 21 H 0.140 0.860 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.103 4.103 25 H 0.148 0.852 26 C 0.325 3.675 27 O -0.370 6.370 28 O -0.334 6.334 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.881 -9.920 3.115 10.566 hybrid contribution 0.528 2.339 -0.745 2.511 sum 2.409 -7.581 2.370 8.300 Atomic orbital electron populations 1.69925 1.05930 1.27194 1.50639 1.24918 0.94765 0.99163 0.95079 0.86579 0.79457 0.82651 0.78897 1.20249 1.21400 1.20229 1.21634 0.94427 0.89905 1.50625 0.90860 1.19473 0.87429 0.82797 0.98337 1.48051 1.45063 1.33669 1.04163 1.20098 0.96499 0.91968 0.87746 1.21476 0.97619 0.97008 0.98631 1.21641 0.92611 0.99461 0.94839 1.22103 1.01022 0.94115 1.02498 1.22695 0.93791 0.96458 0.93994 1.67704 1.04124 1.34843 1.13346 1.22814 0.98034 0.87969 0.95413 1.19529 0.80621 0.80898 0.85008 1.90541 1.32878 1.34447 1.87636 1.22490 0.98309 1.00693 0.92306 0.86023 1.22761 0.96939 0.98846 0.97574 1.22968 0.97186 0.94602 1.00906 1.22303 0.88771 1.00402 0.98802 0.85207 1.23183 0.85377 0.74384 0.84594 1.90820 1.87296 1.38713 1.20163 1.84506 1.17071 1.79025 1.52812 0.92685 0.94745 0.94659 0.89368 0.89658 0.84542 0.85074 0.83294 0.82560 0.90703 0.89058 0.88089 0.90880 0.74070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.29 55.43 0.74 -23.70 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -13.72 9.25 -34.44 -0.32 -14.04 16 8 H 0.07 2.03 7.13 -52.49 -0.37 1.66 16 9 C 0.24 5.56 4.81 -5.19 -0.02 5.53 16 10 N -0.58 -12.06 2.45 -176.44 -0.43 -12.49 16 11 C 0.16 2.96 5.57 -5.20 -0.03 2.93 16 12 C -0.14 -2.40 5.48 -104.48 -0.57 -2.97 16 13 C -0.06 -0.89 9.86 -39.27 -0.39 -1.28 16 14 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 15 C 0.09 1.19 11.18 -17.54 -0.20 1.00 16 16 N -0.49 -7.97 10.36 -13.25 -0.14 -8.10 16 17 C 0.11 1.93 10.86 -17.55 -0.19 1.73 16 18 C 0.55 11.19 4.98 -10.98 -0.05 11.13 16 19 O -0.57 -12.06 13.75 1.24 0.02 -12.04 16 20 C -0.12 -2.10 3.67 -90.96 -0.33 -2.44 16 21 H 0.12 2.40 5.72 -51.93 -0.30 2.11 16 22 C -0.12 -1.75 7.62 -25.92 -0.20 -1.95 16 23 C -0.12 -1.65 7.08 -25.92 -0.18 -1.83 16 24 C -0.08 -1.33 4.19 -90.96 -0.38 -1.71 16 25 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 26 C 0.48 8.70 6.53 36.01 0.24 8.93 16 27 O -0.49 -10.68 15.29 -21.71 -0.33 -11.01 16 28 O -0.52 -7.52 13.31 -39.25 -0.52 -8.05 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.04 0.85 6.14 -51.93 -0.32 0.53 16 32 H 0.09 1.58 8.03 -51.93 -0.42 1.17 16 33 H 0.09 1.59 7.31 -51.93 -0.38 1.21 16 34 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.16 2.66 7.88 -52.49 -0.41 2.25 16 38 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 40 H 0.10 1.59 6.94 -51.93 -0.36 1.23 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 4.24 9.10 45.56 0.41 4.65 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -32.12 357.25 -8.09 -40.21 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.65 Total: 9.81 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.13 Total: 3.87 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.17 Total: -44.30 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.84 Total: -31.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.12 -8.09 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397013423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.164 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds