Wall clock time and date at job start Tue Mar 31 2020 12:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47169 * 240.00423 * 3 2 1 5 5 H 1.48500 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47365 * 120.00481 * 3 2 1 7 7 C 1.37886 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99721 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.46492 * 120.00199 * 264.29814 * 10 9 7 12 12 C 1.50701 * 109.46916 * 270.00153 * 11 10 9 13 13 C 1.38672 * 120.42011 * 90.00149 * 12 11 10 14 14 C 1.38636 * 118.42250 * 179.97438 * 13 12 11 15 15 C 1.38224 * 119.15887 * 0.02562 * 14 13 12 16 16 N 1.31861 * 120.76359 * 359.97438 * 15 14 13 17 17 C 1.31880 * 121.72619 * 359.70776 * 16 15 14 18 18 C 1.34776 * 120.00014 * 84.29988 * 10 9 7 19 19 O 1.21276 * 120.00523 * 184.92509 * 18 10 9 20 20 C 1.50707 * 119.99944 * 4.92171 * 18 10 9 21 21 H 1.09002 * 112.90636 * 357.09651 * 20 18 10 22 22 C 1.53774 * 113.61434 * 128.34473 * 20 18 10 23 23 C 1.53781 * 87.08397 * 89.11736 * 22 20 18 24 24 C 1.53775 * 87.07776 * 25.43319 * 23 22 20 25 25 H 1.09000 * 113.61617 * 89.20460 * 24 23 22 26 26 C 1.50705 * 113.61608 * 220.01883 * 24 23 22 27 27 O 1.20823 * 120.00100 * 130.25553 * 26 24 23 28 28 O 1.34228 * 119.99762 * 310.26671 * 26 24 23 29 29 H 0.97004 * 119.99246 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47480 * 60.00808 * 9 7 2 31 31 H 1.09001 * 109.47635 * 300.00106 * 9 7 2 32 32 H 1.09002 * 109.47360 * 29.99519 * 11 10 9 33 33 H 1.08997 * 109.47415 * 149.99923 * 11 10 9 34 34 H 1.07991 * 120.78877 * 359.97438 * 13 12 11 35 35 H 1.07998 * 120.42191 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.61910 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.62030 * 180.30478 * 17 16 15 38 38 H 1.09004 * 113.61868 * 334.56452 * 22 20 18 39 39 H 1.09007 * 113.61656 * 203.66500 * 22 20 18 40 40 H 1.08998 * 113.61278 * 270.88407 * 23 22 20 41 41 H 1.08995 * 113.69032 * 139.99345 * 23 22 20 42 42 H 0.96698 * 116.99823 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.5830 -4.2515 -1.2629 12 6 1.6387 -5.3891 -1.5546 13 6 0.4806 -5.1706 -2.2855 14 6 -0.3583 -6.2468 -2.5301 15 6 -0.0152 -7.4930 -2.0403 16 7 1.0944 -7.6639 -1.3488 17 6 1.9188 -6.6645 -1.1023 18 6 2.7288 -4.0497 1.1609 19 8 3.5830 -4.9105 1.1540 20 6 2.2556 -3.4684 2.4683 21 1 1.5247 -2.6703 2.3380 22 6 1.8316 -4.5300 3.4969 23 6 3.2945 -4.5419 3.9706 24 6 3.3986 -3.1058 3.4310 25 1 3.1300 -2.3438 4.1627 26 6 4.7039 -2.8151 2.7360 27 8 4.7046 -2.3041 1.6411 28 8 5.8656 -3.1242 3.3332 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.5315 -3.5206 -2.0699 33 1 3.6003 -4.6348 -1.1843 34 1 0.2381 -4.1854 -2.6554 35 1 -1.2687 -6.1131 -3.0954 36 1 -0.6632 -8.3367 -2.2268 37 1 2.8210 -6.8438 -0.5364 38 1 1.5104 -5.4697 3.0475 39 1 1.1330 -4.1575 4.2462 40 1 3.9208 -5.2559 3.4358 41 1 3.4038 -4.6107 5.0529 42 1 6.6766 -2.9192 2.8483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397013423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:50 Heat of formation + Delta-G solvation = -84.331834 kcal Electronic energy + Delta-G solvation = -27791.332428 eV Core-core repulsion = 23929.496800 eV Total energy + Delta-G solvation = -3861.835628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21150 -41.16472 -40.26879 -38.32852 -36.94560 -36.74287 -34.79071 -33.52195 -32.63461 -29.36809 -28.62506 -28.21463 -26.39757 -24.96234 -24.34932 -23.29337 -22.98639 -21.58047 -19.39761 -19.01207 -18.53039 -18.33542 -17.93169 -17.59331 -17.25659 -16.79452 -16.59047 -16.35245 -16.05006 -15.63014 -15.36150 -14.84483 -14.65860 -14.29375 -14.21958 -14.03507 -13.86490 -13.68523 -13.52069 -13.18153 -13.01520 -12.87587 -12.63629 -12.55077 -12.47687 -12.43247 -12.06658 -11.91394 -11.68655 -11.29591 -11.16011 -10.84341 -10.63697 -10.52102 -10.41200 -9.95508 -9.45203 -8.17669 -6.27644 0.11214 0.31363 1.31133 1.38417 1.39395 1.48093 1.75753 2.17397 2.32885 2.44729 2.93438 3.12497 3.34053 3.50115 3.61129 3.65706 3.80901 3.89161 3.91803 4.07413 4.08737 4.27510 4.47932 4.53896 4.62246 4.66310 4.72713 4.74354 4.84802 4.87624 4.92323 4.97240 5.06591 5.17558 5.25576 5.34811 5.42568 5.64560 5.73779 5.76999 5.85563 6.12673 6.58696 6.88636 6.99014 7.10059 7.33594 7.45268 8.87808 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009571 B = 0.006325 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.671620 B = 4425.721357 C = 6409.932958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.259 3.741 10 N -0.589 5.589 11 C 0.163 3.837 12 C -0.155 4.155 13 C -0.069 4.069 14 C -0.165 4.165 15 C 0.090 3.910 16 N -0.509 5.509 17 C 0.104 3.896 18 C 0.546 3.454 19 O -0.586 6.586 20 C -0.136 4.136 21 H 0.099 0.901 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.088 4.088 25 H 0.159 0.841 26 C 0.483 3.517 27 O -0.536 6.536 28 O -0.509 6.509 29 H 0.266 0.734 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.188 0.812 37 H 0.143 0.857 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -9.494 3.881 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.138 3.862 10 N -0.317 5.317 11 C 0.039 3.961 12 C -0.159 4.159 13 C -0.096 4.096 14 C -0.184 4.184 15 C -0.067 4.067 16 N -0.218 5.218 17 C -0.052 4.052 18 C 0.335 3.665 19 O -0.469 6.469 20 C -0.157 4.157 21 H 0.117 0.883 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.107 4.107 25 H 0.176 0.824 26 C 0.326 3.674 27 O -0.425 6.425 28 O -0.322 6.322 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.205 0.795 37 H 0.161 0.839 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 0.910 -10.572 4.081 11.369 hybrid contribution 0.867 2.471 -1.078 2.832 sum 1.777 -8.101 3.003 8.821 Atomic orbital electron populations 1.69985 1.06708 1.27893 1.51255 1.25471 0.95446 1.01543 0.94927 0.85801 0.78500 0.79989 0.78443 1.20456 1.20247 1.20519 1.21679 0.93443 0.91396 1.50403 0.93025 1.19064 0.87270 0.82646 0.97218 1.48054 1.44914 1.33407 1.05313 1.20067 0.96644 0.92476 0.86873 1.21245 0.98223 0.96223 1.00163 1.21792 0.92501 1.00479 0.94779 1.22477 1.01452 0.93006 1.01464 1.23372 0.93040 0.97948 0.92348 1.67720 1.05128 1.34631 1.14327 1.22602 0.98222 0.88285 0.96096 1.19983 0.80213 0.80611 0.85658 1.90519 1.33380 1.35075 1.87931 1.22591 0.99194 1.01551 0.92379 0.88306 1.22817 0.98007 0.97140 0.96640 1.22854 0.96177 0.92188 1.02846 1.22561 0.86978 1.02675 0.98500 0.82370 1.23652 0.86714 0.73081 0.83955 1.90807 1.88094 1.41224 1.22397 1.84460 1.17158 1.78188 1.52406 0.92458 0.95782 0.95512 0.89764 0.90696 0.84417 0.81394 0.79470 0.83932 0.91491 0.85789 0.90293 0.86996 0.72130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 13.29 21.45 0.28 -49.92 16 2 C 0.03 1.39 5.46 84.66 0.46 1.85 16 3 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.53 -28.38 9.25 25.60 0.24 -28.14 16 8 H 0.05 2.98 7.13 -2.91 -0.02 2.95 16 9 C 0.26 12.43 4.81 85.63 0.41 12.85 16 10 N -0.59 -25.49 2.45 -830.52 -2.04 -27.53 16 11 C 0.16 6.33 5.57 85.64 0.48 6.80 16 12 C -0.16 -5.32 5.48 -19.77 -0.11 -5.42 16 13 C -0.07 -2.06 9.86 22.47 0.22 -1.84 16 14 C -0.16 -3.91 10.11 22.36 0.23 -3.69 16 15 C 0.09 2.22 11.18 84.69 0.95 3.17 16 16 N -0.51 -16.07 10.36 -195.84 -2.03 -18.10 16 17 C 0.10 3.58 10.86 84.67 0.92 4.50 16 18 C 0.55 22.86 4.98 87.66 0.44 23.30 16 19 O -0.59 -25.53 13.75 1.12 0.02 -25.52 16 20 C -0.14 -4.90 3.67 -11.01 -0.04 -4.94 16 21 H 0.10 3.99 5.72 -2.39 -0.01 3.98 16 22 C -0.11 -2.89 7.62 31.12 0.24 -2.65 16 23 C -0.10 -2.63 7.08 31.12 0.22 -2.41 16 24 C -0.09 -2.70 4.19 -11.01 -0.05 -2.75 16 25 H 0.16 3.89 8.14 -2.39 -0.02 3.88 16 26 C 0.48 17.28 6.53 71.24 0.47 17.74 16 27 O -0.54 -24.31 15.29 24.81 0.38 -23.93 16 28 O -0.51 -14.11 13.31 -51.40 -0.68 -14.79 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.02 1.20 8.03 -2.39 -0.02 1.18 16 31 H 0.03 1.34 6.14 -2.39 -0.01 1.33 16 32 H 0.08 3.23 8.03 -2.39 -0.02 3.21 16 33 H 0.07 3.00 7.31 -2.39 -0.02 2.98 16 34 H 0.14 4.02 8.06 -2.92 -0.02 3.99 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.14 5.15 7.88 -2.91 -0.02 5.12 16 38 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 39 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.08 2.40 6.94 -2.39 -0.02 2.38 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.42 8.48 9.10 -74.06 -0.67 7.80 16 Total: -1.00 -71.03 357.25 3.40 -67.63 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.38 Total: 28.15 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.07 Total: 18.37 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -3.78 Total: -95.54 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -0.29 Total: -64.24 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.03 3.40 -67.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397013423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.706 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds