Wall clock time and date at job start Tue Mar 31 2020 13:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39598 * 120.07566 * 2 1 4 4 C 1.47849 * 120.14007 * 0.25321 * 3 2 1 5 5 O 1.21551 * 119.99988 * 55.33423 * 4 3 2 6 6 N 1.34775 * 119.99899 * 235.33159 * 4 3 2 7 7 C 1.46926 * 120.63329 * 355.51985 * 6 4 3 8 8 C 1.53625 * 108.54237 * 126.36547 * 7 6 4 9 9 C 1.53037 * 109.23911 * 54.86319 * 8 7 6 10 10 C 1.50706 * 109.44968 * 178.49402 * 9 8 7 11 11 H 1.08001 * 119.99870 * 120.05691 * 10 9 8 12 12 C 1.37876 * 119.99789 * 300.06347 * 10 9 8 13 13 N 1.31516 * 119.99899 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47126 * 59.99494 * 14 12 10 16 16 H 1.48497 * 109.46879 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46842 * 299.99564 * 14 12 10 18 18 C 1.53042 * 109.53819 * 298.50770 * 9 8 7 19 19 C 1.46922 * 120.63203 * 175.80420 * 6 4 3 20 20 C 1.39550 * 119.71534 * 179.97438 * 3 2 1 21 21 C 1.37979 * 119.85273 * 359.97438 * 20 3 2 22 22 C 1.38339 * 120.14188 * 0.02562 * 21 20 3 23 23 C 1.37941 * 120.07446 * 180.02562 * 2 1 3 24 24 N 1.48016 * 119.92442 * 0.02562 * 23 2 1 25 25 O 1.21800 * 119.99584 * 186.49069 * 24 23 2 26 26 O 1.21794 * 119.99934 * 6.48854 * 24 23 2 27 27 H 1.08995 * 109.46986 * 96.93199 * 1 2 3 28 28 H 1.08995 * 109.47116 * 216.93193 * 1 2 3 29 29 H 1.09003 * 109.47020 * 336.93472 * 1 2 3 30 30 H 1.08994 * 109.58935 * 246.20413 * 7 6 4 31 31 H 1.09006 * 109.58195 * 6.62829 * 7 6 4 32 32 H 1.08995 * 109.63674 * 294.86766 * 8 7 6 33 33 H 1.09003 * 109.42837 * 174.72584 * 8 7 6 34 34 H 1.09000 * 109.46457 * 58.53020 * 9 8 7 35 35 H 0.97009 * 119.99696 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.49336 * 301.41227 * 18 9 8 37 37 H 1.09005 * 109.49867 * 181.31955 * 18 9 8 38 38 H 1.09005 * 109.58558 * 353.36812 * 19 6 4 39 39 H 1.09004 * 109.59531 * 113.65254 * 19 6 4 40 40 H 1.07999 * 120.07411 * 180.02562 * 20 3 2 41 41 H 1.07991 * 119.92988 * 179.97438 * 21 20 3 42 42 H 1.08002 * 119.85146 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2080 0.0000 4 6 1.4722 2.4912 0.0057 5 8 0.6540 2.7193 0.8751 6 7 1.7100 3.4080 -0.9532 7 6 2.7641 3.1893 -1.9531 8 6 2.1495 3.3434 -3.3526 9 6 1.4610 4.7063 -3.4537 10 6 0.8881 4.8778 -4.8371 11 1 -0.1732 5.0298 -4.9670 12 6 1.7190 4.8404 -5.9367 13 7 3.0115 4.6556 -5.7783 14 14 1.0089 5.0522 -7.6515 15 1 0.3414 6.3748 -7.7509 16 1 2.1023 4.9734 -8.6532 17 1 0.0186 3.9770 -7.9134 18 6 0.3340 4.7883 -2.4215 19 6 0.9243 4.6479 -1.0148 20 6 3.6021 1.1993 0.0005 21 6 4.2814 -0.0017 0.0016 22 6 3.5820 -1.1954 0.0016 23 6 2.1983 -1.1937 -0.0005 24 7 1.4582 -2.4755 -0.0017 25 8 2.0613 -3.5270 0.1171 26 8 0.2461 -2.4788 -0.1213 27 1 -0.3633 -0.1240 -1.0201 28 1 -0.3633 -0.8214 0.6175 29 1 -0.3633 0.9455 0.4026 30 1 3.5563 3.9252 -1.8158 31 1 3.1721 2.1848 -1.8402 32 1 1.4182 2.5529 -3.5205 33 1 2.9368 3.2769 -4.1036 34 1 2.1877 5.4956 -3.2613 35 1 3.5961 4.6297 -6.5520 36 1 -0.3803 3.9841 -2.5982 37 1 -0.1711 5.7502 -2.5098 38 1 0.1178 4.6062 -0.2827 39 1 1.5689 5.5003 -0.8001 40 1 4.1491 2.1304 0.0010 41 1 5.3612 -0.0100 0.0016 42 1 4.1185 -2.1327 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397117129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:37 Heat of formation + Delta-G solvation = -12.141580 kcal Electronic energy + Delta-G solvation = -27134.993149 eV Core-core repulsion = 23276.287925 eV Total energy + Delta-G solvation = -3858.705224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37990 -40.71531 -38.83471 -37.04150 -36.74383 -33.84225 -33.23170 -32.55151 -31.11541 -30.19184 -28.12928 -26.56647 -26.07855 -24.24036 -22.81075 -22.62547 -22.03405 -20.40806 -19.30505 -18.74212 -18.33142 -17.70318 -16.96705 -16.45242 -16.35521 -16.06825 -15.80701 -14.65989 -14.62584 -14.17582 -13.97973 -13.64524 -13.27331 -13.10127 -12.91246 -12.84605 -12.62910 -12.54160 -12.32999 -12.06533 -11.78740 -11.50291 -11.38504 -11.22099 -11.00409 -10.78325 -10.73717 -10.55448 -10.25027 -9.93644 -9.88058 -9.60215 -9.36890 -9.30342 -9.06420 -8.49923 -8.24527 -6.13742 -4.19917 -0.32263 0.48563 1.14280 1.25337 2.52384 2.91809 3.22211 3.23731 3.28654 3.31856 4.09854 4.10917 4.32786 4.35728 4.43671 4.57312 4.84902 5.12382 5.15796 5.21204 5.33985 5.50699 5.56019 5.60141 5.64588 5.74472 5.84277 5.87012 5.92399 5.96861 6.01944 6.07141 6.25177 6.41487 6.47699 6.69013 6.86395 6.95070 7.10447 7.51225 7.56574 7.61472 7.77469 7.90385 8.16184 8.28042 8.83132 9.45992 10.91878 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003680 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.951087 B = 7607.778147 C = 8105.921560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.032 3.968 3 C -0.121 4.121 4 C 0.558 3.442 5 O -0.541 6.541 6 N -0.586 5.586 7 C 0.093 3.907 8 C -0.124 4.124 9 C 0.049 3.951 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.124 4.124 19 C 0.112 3.888 20 C -0.032 4.032 21 C -0.129 4.129 22 C -0.038 4.038 23 C -0.056 4.056 24 N 0.035 4.965 25 O -0.170 6.170 26 O -0.154 6.154 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -7.657 11.372 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.124 4.124 4 C 0.345 3.655 5 O -0.420 6.420 6 N -0.317 5.317 7 C -0.028 4.028 8 C -0.162 4.162 9 C 0.031 3.969 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.162 4.162 19 C -0.010 4.010 20 C -0.051 4.051 21 C -0.147 4.147 22 C -0.057 4.057 23 C -0.139 4.139 24 N 0.552 4.448 25 O -0.383 6.383 26 O -0.369 6.369 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.262 -6.919 11.694 14.240 hybrid contribution -0.285 -0.277 -1.168 1.234 sum 3.977 -7.197 10.526 13.357 Atomic orbital electron populations 1.21563 0.87923 1.06345 1.04786 1.19768 0.98431 0.89144 0.89626 1.19851 0.93988 0.93349 1.05253 1.17932 0.82489 0.82947 0.82124 1.90751 1.35585 1.78695 1.36957 1.48232 1.35860 1.19406 1.28211 1.22404 0.89437 1.00447 0.90540 1.22116 1.01737 0.99761 0.92586 1.18637 0.92327 0.93079 0.92903 1.21155 0.94015 1.49211 0.90850 0.92662 1.24946 0.94836 0.94924 0.99120 1.69810 1.02977 1.50022 1.30334 0.86666 0.78677 0.78803 0.83951 1.20229 1.21256 1.20281 1.22030 0.99986 1.01145 0.93071 1.21811 0.95183 0.84313 0.99678 1.21812 0.92746 0.99854 0.90678 1.21122 1.01245 0.90386 1.01965 1.21171 0.90757 1.01061 0.92714 1.20795 0.92455 0.83268 1.17405 1.43479 1.01158 1.02560 0.97622 1.94521 1.70135 1.19948 1.53685 1.94502 0.96110 1.93737 1.52577 0.88983 0.88187 0.88618 0.91273 0.91329 0.94162 0.87586 0.95336 0.92853 0.92798 0.91757 0.90035 0.91658 0.83277 0.82876 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.37 36.01 0.30 -1.76 16 2 C 0.03 0.44 5.91 -104.22 -0.62 -0.17 16 3 C -0.12 -1.61 4.84 -104.97 -0.51 -2.12 16 4 C 0.56 8.87 6.50 -12.33 -0.08 8.79 16 5 O -0.54 -9.84 14.60 5.32 0.08 -9.76 16 6 N -0.59 -9.43 2.97 -173.61 -0.51 -9.94 16 7 C 0.09 1.48 5.62 -3.49 -0.02 1.46 16 8 C -0.12 -2.53 5.17 -26.39 -0.14 -2.67 16 9 C 0.05 1.09 2.06 -91.73 -0.19 0.90 16 10 C -0.51 -13.11 8.56 -34.44 -0.29 -13.40 16 11 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 12 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 13 N -0.89 -23.45 11.31 55.43 0.63 -22.82 16 14 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 19 C 0.11 1.84 6.42 -3.71 -0.02 1.81 16 20 C -0.03 -0.33 7.47 -39.19 -0.29 -0.62 16 21 C -0.13 -1.05 10.03 -39.64 -0.40 -1.45 16 22 C -0.04 -0.37 9.55 -39.49 -0.38 -0.75 16 23 C -0.06 -0.71 6.82 -80.01 -0.55 -1.25 16 24 N 0.03 0.49 4.45 33.93 0.15 0.64 16 25 O -0.17 -2.40 18.46 -29.46 -0.54 -2.94 16 26 O -0.15 -2.27 15.35 -29.46 -0.45 -2.73 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.10 1.31 5.87 -51.93 -0.30 1.01 16 29 H 0.10 1.43 5.53 -51.93 -0.29 1.15 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.94 4.79 -51.93 -0.25 0.70 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 2.44 6.03 -51.93 -0.31 2.13 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.32 7.03 -51.93 -0.36 0.96 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.15 1.25 7.46 -52.49 -0.39 0.86 16 41 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.16 1.19 7.61 -52.49 -0.40 0.79 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -28.75 341.35 -9.18 -37.93 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.23 Total: 1.45 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.42 Total: -12.20 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.26 Total: -32.12 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.92 Total: -15.43 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.75 -9.18 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397117129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.786 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds