Wall clock time and date at job start Tue Mar 31 2020 13:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39598 * 120.07566 * 2 1 4 4 C 1.47849 * 120.14007 * 0.25321 * 3 2 1 5 5 O 1.21551 * 119.99988 * 55.33423 * 4 3 2 6 6 N 1.34775 * 119.99899 * 235.33159 * 4 3 2 7 7 C 1.46926 * 120.63329 * 355.51985 * 6 4 3 8 8 C 1.53625 * 108.54237 * 126.36547 * 7 6 4 9 9 C 1.53037 * 109.23911 * 54.86319 * 8 7 6 10 10 C 1.50706 * 109.44968 * 178.49402 * 9 8 7 11 11 H 1.08001 * 119.99870 * 120.05691 * 10 9 8 12 12 C 1.37876 * 119.99789 * 300.06347 * 10 9 8 13 13 N 1.31516 * 119.99899 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47126 * 59.99494 * 14 12 10 16 16 H 1.48497 * 109.46879 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46842 * 299.99564 * 14 12 10 18 18 C 1.53042 * 109.53819 * 298.50770 * 9 8 7 19 19 C 1.46922 * 120.63203 * 175.80420 * 6 4 3 20 20 C 1.39550 * 119.71534 * 179.97438 * 3 2 1 21 21 C 1.37979 * 119.85273 * 359.97438 * 20 3 2 22 22 C 1.38339 * 120.14188 * 0.02562 * 21 20 3 23 23 C 1.37941 * 120.07446 * 180.02562 * 2 1 3 24 24 N 1.48016 * 119.92442 * 0.02562 * 23 2 1 25 25 O 1.21800 * 119.99584 * 186.49069 * 24 23 2 26 26 O 1.21794 * 119.99934 * 6.48854 * 24 23 2 27 27 H 1.08995 * 109.46986 * 96.93199 * 1 2 3 28 28 H 1.08995 * 109.47116 * 216.93193 * 1 2 3 29 29 H 1.09003 * 109.47020 * 336.93472 * 1 2 3 30 30 H 1.08994 * 109.58935 * 246.20413 * 7 6 4 31 31 H 1.09006 * 109.58195 * 6.62829 * 7 6 4 32 32 H 1.08995 * 109.63674 * 294.86766 * 8 7 6 33 33 H 1.09003 * 109.42837 * 174.72584 * 8 7 6 34 34 H 1.09000 * 109.46457 * 58.53020 * 9 8 7 35 35 H 0.97009 * 119.99696 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.49336 * 301.41227 * 18 9 8 37 37 H 1.09005 * 109.49867 * 181.31955 * 18 9 8 38 38 H 1.09005 * 109.58558 * 353.36812 * 19 6 4 39 39 H 1.09004 * 109.59531 * 113.65254 * 19 6 4 40 40 H 1.07999 * 120.07411 * 180.02562 * 20 3 2 41 41 H 1.07991 * 119.92988 * 179.97438 * 21 20 3 42 42 H 1.08002 * 119.85146 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2080 0.0000 4 6 1.4722 2.4912 0.0057 5 8 0.6540 2.7193 0.8751 6 7 1.7100 3.4080 -0.9532 7 6 2.7641 3.1893 -1.9531 8 6 2.1495 3.3434 -3.3526 9 6 1.4610 4.7063 -3.4537 10 6 0.8881 4.8778 -4.8371 11 1 -0.1732 5.0298 -4.9670 12 6 1.7190 4.8404 -5.9367 13 7 3.0115 4.6556 -5.7783 14 14 1.0089 5.0522 -7.6515 15 1 0.3414 6.3748 -7.7509 16 1 2.1023 4.9734 -8.6532 17 1 0.0186 3.9770 -7.9134 18 6 0.3340 4.7883 -2.4215 19 6 0.9243 4.6479 -1.0148 20 6 3.6021 1.1993 0.0005 21 6 4.2814 -0.0017 0.0016 22 6 3.5820 -1.1954 0.0016 23 6 2.1983 -1.1937 -0.0005 24 7 1.4582 -2.4755 -0.0017 25 8 2.0613 -3.5270 0.1171 26 8 0.2461 -2.4788 -0.1213 27 1 -0.3633 -0.1240 -1.0201 28 1 -0.3633 -0.8214 0.6175 29 1 -0.3633 0.9455 0.4026 30 1 3.5563 3.9252 -1.8158 31 1 3.1721 2.1848 -1.8402 32 1 1.4182 2.5529 -3.5205 33 1 2.9368 3.2769 -4.1036 34 1 2.1877 5.4956 -3.2613 35 1 3.5961 4.6297 -6.5520 36 1 -0.3803 3.9841 -2.5982 37 1 -0.1711 5.7502 -2.5098 38 1 0.1178 4.6062 -0.2827 39 1 1.5689 5.5003 -0.8001 40 1 4.1491 2.1304 0.0010 41 1 5.3612 -0.0100 0.0016 42 1 4.1185 -2.1327 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397117129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:36 Heat of formation + Delta-G solvation = -26.230330 kcal Electronic energy + Delta-G solvation = -27135.604083 eV Core-core repulsion = 23276.287925 eV Total energy + Delta-G solvation = -3859.316158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40729 -41.84705 -39.92921 -38.46652 -37.82099 -35.46500 -34.19275 -33.76185 -32.61769 -31.63788 -29.18781 -28.08276 -27.15509 -25.58605 -24.23815 -23.87766 -23.12729 -21.70494 -20.55935 -19.78539 -19.58936 -18.74722 -18.51264 -17.86806 -17.32588 -17.14726 -16.99841 -16.51181 -15.85629 -15.23871 -15.05542 -14.89827 -14.68466 -14.55983 -14.36698 -14.07676 -13.85103 -13.54997 -13.42639 -13.28369 -13.10917 -12.96075 -12.80846 -12.56124 -12.50185 -12.30740 -12.17314 -12.00011 -11.80826 -11.52030 -11.13128 -11.04452 -10.94563 -10.55344 -10.39302 -10.23230 -9.66276 -8.09995 -6.21959 -1.28913 -0.40902 0.18718 0.27870 1.37171 1.41221 1.42934 1.49072 1.83518 2.20268 2.42807 3.06752 3.17382 3.23436 3.50310 3.54499 3.80324 3.95113 4.04543 4.19285 4.27448 4.34691 4.36144 4.41266 4.45557 4.54166 4.64923 4.73714 4.81722 4.85151 4.87994 4.90883 4.96107 5.12439 5.16226 5.20150 5.38481 5.42707 5.47564 5.62247 5.97286 6.09972 6.29977 6.38545 6.47558 6.86665 6.91008 7.45746 8.93158 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003680 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.951087 B = 7607.778147 C = 8105.921560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.014 3.986 3 C -0.142 4.142 4 C 0.561 3.439 5 O -0.568 6.568 6 N -0.589 5.589 7 C 0.107 3.893 8 C -0.116 4.116 9 C 0.046 3.954 10 C -0.538 4.538 11 H 0.045 0.955 12 C 0.023 3.977 13 N -0.908 5.908 14 Si 0.943 3.057 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.278 1.278 18 C -0.115 4.115 19 C 0.117 3.883 20 C -0.026 4.026 21 C -0.105 4.105 22 C -0.028 4.028 23 C -0.070 4.070 24 N 0.035 4.965 25 O -0.161 6.161 26 O -0.191 6.191 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.174 0.826 41 H 0.202 0.798 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -8.199 11.973 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.146 4.146 4 C 0.350 3.650 5 O -0.450 6.450 6 N -0.320 5.320 7 C -0.015 4.015 8 C -0.154 4.154 9 C 0.028 3.972 10 C -0.576 4.576 11 H 0.063 0.937 12 C -0.177 4.177 13 N -0.548 5.548 14 Si 0.769 3.231 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.153 4.153 19 C -0.004 4.004 20 C -0.045 4.045 21 C -0.123 4.123 22 C -0.047 4.047 23 C -0.153 4.153 24 N 0.548 4.452 25 O -0.378 6.378 26 O -0.398 6.398 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.191 0.809 41 H 0.219 0.781 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.820 -7.446 12.289 15.905 hybrid contribution -1.028 -0.123 -1.349 1.701 sum 5.792 -7.570 10.939 14.509 Atomic orbital electron populations 1.21427 0.89120 1.05264 1.04247 1.19720 0.97995 0.89984 0.91104 1.19707 0.95427 0.91591 1.07835 1.18281 0.81984 0.83444 0.81330 1.90733 1.36834 1.79321 1.38063 1.48222 1.35948 1.19426 1.28382 1.22273 0.89145 1.02602 0.87462 1.21872 1.00434 0.97946 0.95189 1.18606 0.92861 0.93434 0.92314 1.21526 0.93753 1.49375 0.92905 0.93694 1.25543 0.95258 0.94910 1.01960 1.69904 1.03543 1.50379 1.30956 0.85854 0.78068 0.78578 0.80587 1.19982 1.20738 1.20409 1.21875 0.98723 1.00775 0.93972 1.21697 0.95699 0.85355 0.97687 1.22192 0.91203 1.01977 0.89096 1.21660 1.03281 0.88541 0.98796 1.21659 0.89304 1.03054 0.90676 1.20967 0.93528 0.81941 1.18902 1.43734 1.01133 1.03113 0.97207 1.94485 1.69920 1.20615 1.52800 1.94510 0.96810 1.94020 1.54482 0.89717 0.88197 0.90316 0.89686 0.88638 0.96033 0.89967 0.97133 0.92868 0.94239 0.91474 0.89834 0.90047 0.80868 0.78064 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.37 71.24 0.60 -3.56 16 2 C 0.01 0.38 5.91 -19.61 -0.12 0.26 16 3 C -0.14 -3.54 4.84 -20.09 -0.10 -3.63 16 4 C 0.56 17.31 6.50 86.79 0.56 17.87 16 5 O -0.57 -20.70 14.60 -3.87 -0.06 -20.76 16 6 N -0.59 -18.25 2.97 -821.47 -2.44 -20.69 16 7 C 0.11 3.18 5.62 86.51 0.49 3.67 16 8 C -0.12 -4.75 5.17 30.82 0.16 -4.59 16 9 C 0.05 2.09 2.06 -11.51 -0.02 2.06 16 10 C -0.54 -27.93 8.56 25.60 0.22 -27.71 16 11 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 12 C 0.02 1.18 5.30 84.65 0.45 1.63 16 13 N -0.91 -47.88 11.31 21.45 0.24 -47.64 16 14 Si 0.94 41.70 29.54 68.60 2.03 43.72 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 C -0.12 -4.41 5.30 30.67 0.16 -4.25 16 19 C 0.12 3.78 6.42 86.36 0.55 4.34 16 20 C -0.03 -0.42 7.47 22.52 0.17 -0.26 16 21 C -0.10 -1.14 10.03 22.23 0.22 -0.91 16 22 C -0.03 -0.43 9.55 22.33 0.21 -0.21 16 23 C -0.07 -1.64 6.82 36.34 0.25 -1.40 16 24 N 0.03 0.95 4.45 -46.55 -0.21 0.74 16 25 O -0.16 -4.29 18.46 18.89 0.35 -3.94 16 26 O -0.19 -5.80 15.35 18.89 0.29 -5.51 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.10 2.80 5.87 -2.39 -0.01 2.78 16 29 H 0.08 2.49 5.53 -2.39 -0.01 2.48 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 2.34 4.79 -2.38 -0.01 2.33 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 3.80 6.03 -2.39 -0.01 3.79 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.08 2.69 7.03 -2.38 -0.02 2.67 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.17 1.99 7.46 -2.91 -0.02 1.96 16 41 H 0.20 0.37 8.06 -2.92 -0.02 0.34 16 42 H 0.18 1.85 7.61 -2.91 -0.02 1.83 16 Total: -1.00 -64.59 341.35 5.07 -59.52 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.81 Total: -16.68 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -2.40 Total: -67.58 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: 0.58 Total: -30.21 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.59 5.07 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397117129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.287 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds