Wall clock time and date at job start Tue Mar 31 2020 13:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37979 * 119.92983 * 2 1 4 4 C 1.39554 * 119.85102 * 180.31435 * 3 2 1 5 5 C 1.47846 * 120.14377 * 179.67246 * 4 3 2 6 6 O 1.21554 * 119.99988 * 50.94532 * 5 4 3 7 7 N 1.34775 * 120.00078 * 230.94126 * 5 4 3 8 8 C 1.46927 * 120.62893 * 176.22372 * 7 5 4 9 9 C 1.53195 * 108.89482 * 233.51483 * 8 7 5 10 10 C 1.53080 * 109.29184 * 305.58050 * 9 8 7 11 11 C 1.50704 * 109.43764 * 181.23178 * 10 9 8 12 12 H 1.08002 * 119.99743 * 239.79019 * 11 10 9 13 13 C 1.37878 * 120.00169 * 59.79874 * 11 10 9 14 14 N 1.31518 * 119.99575 * 359.97438 * 13 11 10 15 15 Si 1.86787 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47330 * 89.99888 * 15 13 11 17 17 H 1.48506 * 109.47515 * 209.99820 * 15 13 11 18 18 H 1.48499 * 109.47318 * 329.99960 * 15 13 11 19 19 C 1.53043 * 109.65891 * 61.15166 * 10 9 8 20 20 C 1.46923 * 120.63151 * 356.19853 * 7 5 4 21 21 C 1.39602 * 119.71060 * 359.40715 * 4 3 2 22 22 C 1.37924 * 119.85320 * 0.27056 * 21 4 3 23 23 N 1.48021 * 119.92817 * 180.02562 * 22 21 4 24 24 O 1.21805 * 119.99565 * 359.97438 * 23 22 21 25 25 O 1.21794 * 119.99902 * 180.02562 * 23 22 21 26 26 C 1.38340 * 119.92434 * 179.69111 * 2 1 3 27 27 H 1.09000 * 109.46840 * 270.30751 * 1 2 3 28 28 H 1.08996 * 109.46260 * 30.30309 * 1 2 3 29 29 H 1.08996 * 109.46793 * 150.30534 * 1 2 3 30 30 H 1.08002 * 120.07721 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.58817 * 353.37230 * 8 7 5 32 32 H 1.09003 * 109.59087 * 113.66081 * 8 7 5 33 33 H 1.08999 * 109.49263 * 65.38366 * 9 8 7 34 34 H 1.08995 * 109.50088 * 185.48685 * 9 8 7 35 35 H 1.08995 * 109.34946 * 301.12270 * 10 9 8 36 36 H 0.96996 * 119.99591 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.49766 * 178.74500 * 19 10 9 38 38 H 1.09000 * 109.52441 * 58.66901 * 19 10 9 39 39 H 1.09003 * 109.59070 * 246.19901 * 20 7 5 40 40 H 1.09004 * 109.59056 * 6.48560 * 20 7 5 41 41 H 1.08003 * 120.06873 * 180.25121 * 21 4 3 42 42 H 1.08000 * 119.85831 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1958 0.0000 4 6 3.5910 1.1939 -0.0066 5 6 4.3352 2.4714 -0.0140 6 8 4.0719 3.3328 0.8022 7 7 5.3055 2.6808 -0.9256 8 6 5.9972 3.9750 -0.9988 9 6 5.9152 4.5007 -2.4353 10 6 6.4592 3.4388 -3.3943 11 6 6.4082 3.9643 -4.8058 12 1 5.8287 3.4450 -5.5548 13 6 7.1015 5.1080 -5.1411 14 7 7.8069 5.7405 -4.2290 15 14 7.0388 5.7590 -6.8907 16 1 5.9031 6.7062 -7.0262 17 1 8.3092 6.4617 -7.2034 18 1 6.8543 4.6269 -7.8339 19 6 5.6105 2.1694 -3.2920 20 6 5.6922 1.6190 -1.8646 21 6 4.2813 -0.0195 -0.0007 22 6 3.5810 -1.2078 0.0060 23 7 4.3112 -2.4953 0.0129 24 8 5.5292 -2.5046 0.0122 25 8 3.6941 -3.5453 0.0184 26 6 2.1972 -1.1990 0.0065 27 1 -0.3633 0.0055 1.0277 28 1 -0.3632 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6556 2.1312 -0.0004 31 1 5.5190 4.6836 -0.3225 32 1 7.0420 3.8476 -0.7154 33 1 4.8763 4.7158 -2.6852 34 1 6.5073 5.4115 -2.5238 35 1 7.4911 3.2080 -3.1299 36 1 8.2943 6.5453 -4.4647 37 1 5.9864 1.4230 -3.9918 38 1 4.5736 2.4040 -3.5326 39 1 6.7128 1.2990 -1.6543 40 1 5.0144 0.7721 -1.7580 41 1 5.3613 -0.0277 -0.0017 42 1 1.6536 -2.1322 0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397119039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:47 Heat of formation + Delta-G solvation = -18.767221 kcal Electronic energy + Delta-G solvation = -26712.162708 eV Core-core repulsion = 22853.170175 eV Total energy + Delta-G solvation = -3858.992533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39225 -40.70251 -39.02140 -37.00779 -36.74445 -34.09598 -33.43122 -32.39374 -31.16246 -30.24767 -27.74084 -26.83390 -26.54871 -24.47040 -22.96275 -22.23130 -22.14195 -20.31995 -19.24914 -18.83745 -18.24610 -17.72046 -17.09884 -16.89414 -16.33684 -16.21235 -15.62324 -14.75921 -14.63237 -14.27434 -14.08894 -13.76740 -13.33857 -12.99598 -12.92038 -12.77172 -12.69373 -12.53422 -12.43783 -12.18202 -11.87678 -11.72595 -11.37738 -11.30222 -11.28844 -11.00077 -10.74839 -10.55053 -10.23863 -10.00579 -9.82817 -9.69354 -9.55777 -9.19789 -9.04303 -8.46973 -8.23043 -6.09881 -4.16810 -0.41986 0.33664 1.07067 1.14054 2.48513 2.88506 3.18962 3.23765 3.31458 3.33897 3.93376 4.04319 4.34052 4.35009 4.41679 4.47022 4.60404 4.93003 5.04968 5.11582 5.19526 5.20607 5.27246 5.47487 5.54004 5.60138 5.68233 5.76122 5.84432 5.89898 6.09333 6.19538 6.25098 6.27991 6.46421 6.62332 6.80661 7.03555 7.18542 7.44829 7.58930 7.59885 7.81407 7.95318 8.16112 8.30763 8.86296 9.48905 10.95708 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.003354 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.559679 B = 8345.698370 C = 8795.347947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.024 4.024 4 C -0.105 4.105 5 C 0.553 3.447 6 O -0.539 6.539 7 N -0.585 5.585 8 C 0.108 3.892 9 C -0.123 4.123 10 C 0.048 3.952 11 C -0.515 4.515 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.123 4.123 20 C 0.095 3.905 21 C -0.033 4.033 22 C -0.044 4.044 23 N 0.030 4.970 24 O -0.154 6.154 25 O -0.160 6.160 26 C -0.047 4.047 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.160 0.840 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 -11.400 8.848 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.042 4.042 4 C -0.109 4.109 5 C 0.339 3.661 6 O -0.417 6.417 7 N -0.316 5.316 8 C -0.013 4.013 9 C -0.161 4.161 10 C 0.030 3.970 11 C -0.553 4.553 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.028 4.028 21 C -0.053 4.053 22 C -0.127 4.127 23 N 0.550 4.450 24 O -0.371 6.371 25 O -0.376 6.376 26 C -0.066 4.066 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.168 0.832 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.178 0.822 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.376 -10.147 9.270 18.495 hybrid contribution 0.322 -0.002 -1.048 1.096 sum -12.054 -10.149 8.222 17.774 Atomic orbital electron populations 1.20856 0.88699 1.04101 1.03463 1.19872 0.97502 0.91111 1.00098 1.21558 0.92394 0.99227 0.91070 1.20025 0.94425 0.93290 1.03206 1.17967 0.80294 0.85928 0.81885 1.90794 1.67220 1.44974 1.38739 1.48247 1.35293 1.15858 1.32229 1.22025 0.95779 0.82490 1.00966 1.22054 1.00788 1.03133 0.90159 1.18657 0.94206 0.89185 0.94990 1.21156 1.29733 1.09758 0.94671 0.92694 1.24958 0.95035 0.96713 0.97186 1.69829 1.31256 1.18785 1.32987 0.86603 0.77446 0.79048 0.84964 1.20720 1.21175 1.19943 1.22016 1.01395 1.00346 0.92366 1.22202 1.00202 0.89096 0.91258 1.21203 1.02293 0.89125 0.92658 1.20916 0.92632 0.83548 1.15590 1.43550 1.01285 1.02643 0.97519 1.94579 0.95264 1.94154 1.53116 1.94526 1.69403 1.20221 1.53439 1.21042 0.90873 1.00409 0.94245 0.90081 0.90287 0.90515 0.83198 0.90298 0.91655 0.94257 0.87460 0.95259 0.92851 0.91770 0.92833 0.90890 0.91285 0.82205 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.08 -0.70 5.87 -104.68 -0.61 -1.31 16 3 C -0.02 -0.24 9.39 -39.19 -0.37 -0.61 16 4 C -0.11 -1.34 4.99 -104.97 -0.52 -1.86 16 5 C 0.55 8.93 7.23 -12.33 -0.09 8.84 16 6 O -0.54 -10.19 16.47 5.32 0.09 -10.11 16 7 N -0.59 -9.80 2.97 -173.87 -0.52 -10.32 16 8 C 0.11 2.01 6.42 -3.71 -0.02 1.99 16 9 C -0.12 -2.68 5.16 -26.59 -0.14 -2.82 16 10 C 0.05 1.09 2.06 -91.71 -0.19 0.90 16 11 C -0.52 -13.28 8.56 -34.44 -0.29 -13.58 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.05 11.30 55.43 0.63 -23.43 16 15 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C -0.12 -2.28 5.30 -26.61 -0.14 -2.42 16 20 C 0.09 1.46 5.40 -3.71 -0.02 1.44 16 21 C -0.03 -0.40 6.88 -39.19 -0.27 -0.67 16 22 C -0.04 -0.50 6.84 -80.01 -0.55 -1.05 16 23 N 0.03 0.39 4.45 33.93 0.15 0.54 16 24 O -0.15 -2.19 18.44 -29.46 -0.54 -2.74 16 25 O -0.16 -2.11 18.44 -29.46 -0.54 -2.66 16 26 C -0.05 -0.42 9.20 -39.49 -0.36 -0.78 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.92 4.57 -51.93 -0.24 0.68 16 41 H 0.16 1.88 6.66 -52.48 -0.35 1.53 16 42 H 0.16 1.10 7.60 -52.49 -0.40 0.71 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -29.39 350.72 -9.22 -38.60 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.43 Total: -0.01 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.32 Total: -10.62 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.26 Total: -33.20 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.00 Total: -15.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.39 -9.22 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397119039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.836 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds