Wall clock time and date at job start Tue Mar 31 2020 13:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37979 * 119.92983 * 2 1 4 4 C 1.39554 * 119.85102 * 180.31435 * 3 2 1 5 5 C 1.47846 * 120.14377 * 179.67246 * 4 3 2 6 6 O 1.21554 * 119.99988 * 50.94532 * 5 4 3 7 7 N 1.34775 * 120.00078 * 230.94126 * 5 4 3 8 8 C 1.46927 * 120.62893 * 176.22372 * 7 5 4 9 9 C 1.53195 * 108.89482 * 233.51483 * 8 7 5 10 10 C 1.53080 * 109.29184 * 305.58050 * 9 8 7 11 11 C 1.50704 * 109.43764 * 181.23178 * 10 9 8 12 12 H 1.08002 * 119.99743 * 239.79019 * 11 10 9 13 13 C 1.37878 * 120.00169 * 59.79874 * 11 10 9 14 14 N 1.31518 * 119.99575 * 359.97438 * 13 11 10 15 15 Si 1.86787 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47330 * 89.99888 * 15 13 11 17 17 H 1.48506 * 109.47515 * 209.99820 * 15 13 11 18 18 H 1.48499 * 109.47318 * 329.99960 * 15 13 11 19 19 C 1.53043 * 109.65891 * 61.15166 * 10 9 8 20 20 C 1.46923 * 120.63151 * 356.19853 * 7 5 4 21 21 C 1.39602 * 119.71060 * 359.40715 * 4 3 2 22 22 C 1.37924 * 119.85320 * 0.27056 * 21 4 3 23 23 N 1.48021 * 119.92817 * 180.02562 * 22 21 4 24 24 O 1.21805 * 119.99565 * 359.97438 * 23 22 21 25 25 O 1.21794 * 119.99902 * 180.02562 * 23 22 21 26 26 C 1.38340 * 119.92434 * 179.69111 * 2 1 3 27 27 H 1.09000 * 109.46840 * 270.30751 * 1 2 3 28 28 H 1.08996 * 109.46260 * 30.30309 * 1 2 3 29 29 H 1.08996 * 109.46793 * 150.30534 * 1 2 3 30 30 H 1.08002 * 120.07721 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.58817 * 353.37230 * 8 7 5 32 32 H 1.09003 * 109.59087 * 113.66081 * 8 7 5 33 33 H 1.08999 * 109.49263 * 65.38366 * 9 8 7 34 34 H 1.08995 * 109.50088 * 185.48685 * 9 8 7 35 35 H 1.08995 * 109.34946 * 301.12270 * 10 9 8 36 36 H 0.96996 * 119.99591 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.49766 * 178.74500 * 19 10 9 38 38 H 1.09000 * 109.52441 * 58.66901 * 19 10 9 39 39 H 1.09003 * 109.59070 * 246.19901 * 20 7 5 40 40 H 1.09004 * 109.59056 * 6.48560 * 20 7 5 41 41 H 1.08003 * 120.06873 * 180.25121 * 21 4 3 42 42 H 1.08000 * 119.85831 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1958 0.0000 4 6 3.5910 1.1939 -0.0066 5 6 4.3352 2.4714 -0.0140 6 8 4.0719 3.3328 0.8022 7 7 5.3055 2.6808 -0.9256 8 6 5.9972 3.9750 -0.9988 9 6 5.9152 4.5007 -2.4353 10 6 6.4592 3.4388 -3.3943 11 6 6.4082 3.9643 -4.8058 12 1 5.8287 3.4450 -5.5548 13 6 7.1015 5.1080 -5.1411 14 7 7.8069 5.7405 -4.2290 15 14 7.0388 5.7590 -6.8907 16 1 5.9031 6.7062 -7.0262 17 1 8.3092 6.4617 -7.2034 18 1 6.8543 4.6269 -7.8339 19 6 5.6105 2.1694 -3.2920 20 6 5.6922 1.6190 -1.8646 21 6 4.2813 -0.0195 -0.0007 22 6 3.5810 -1.2078 0.0060 23 7 4.3112 -2.4953 0.0129 24 8 5.5292 -2.5046 0.0122 25 8 3.6941 -3.5453 0.0184 26 6 2.1972 -1.1990 0.0065 27 1 -0.3633 0.0055 1.0277 28 1 -0.3632 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6556 2.1312 -0.0004 31 1 5.5190 4.6836 -0.3225 32 1 7.0420 3.8476 -0.7154 33 1 4.8763 4.7158 -2.6852 34 1 6.5073 5.4115 -2.5238 35 1 7.4911 3.2080 -3.1299 36 1 8.2943 6.5453 -4.4647 37 1 5.9864 1.4230 -3.9918 38 1 4.5736 2.4040 -3.5326 39 1 6.7128 1.2990 -1.6543 40 1 5.0144 0.7721 -1.7580 41 1 5.3613 -0.0277 -0.0017 42 1 1.6536 -2.1322 0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397119039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:46 Heat of formation + Delta-G solvation = -33.142263 kcal Electronic energy + Delta-G solvation = -26712.786056 eV Core-core repulsion = 22853.170175 eV Total energy + Delta-G solvation = -3859.615882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.35531 -41.83471 -40.09947 -38.51333 -37.74239 -35.56426 -34.47646 -33.47105 -32.81664 -31.71018 -28.36807 -28.21055 -27.76560 -25.83389 -24.42274 -23.68737 -23.04186 -21.64705 -20.52073 -19.82047 -19.44730 -18.70577 -18.57716 -17.99968 -17.71953 -17.24557 -16.87476 -16.53321 -15.99280 -15.20959 -15.02841 -14.90082 -14.67808 -14.61955 -14.34978 -14.00655 -13.60531 -13.53527 -13.23288 -13.15087 -13.07006 -12.95952 -12.82586 -12.72511 -12.49836 -12.33398 -12.33060 -12.22152 -12.00819 -11.48382 -11.37052 -11.03146 -10.90050 -10.72548 -10.43639 -10.16448 -9.73164 -8.10061 -6.23757 -1.34253 -0.51741 0.15739 0.22198 1.33490 1.40415 1.42760 1.51267 1.75984 2.13587 2.42494 2.96809 3.17201 3.23197 3.51836 3.55988 3.70736 3.84425 3.89682 4.14091 4.19260 4.26908 4.39566 4.43824 4.46862 4.59422 4.63138 4.72902 4.76589 4.82261 4.88623 4.90163 5.07184 5.10215 5.15610 5.18950 5.34974 5.39197 5.43833 5.62470 5.93544 6.06780 6.25621 6.34920 6.42082 6.84372 6.87039 7.44754 8.93581 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.003354 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.559679 B = 8345.698370 C = 8795.347947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C -0.022 4.022 4 C -0.121 4.121 5 C 0.556 3.444 6 O -0.570 6.570 7 N -0.590 5.590 8 C 0.119 3.881 9 C -0.111 4.111 10 C 0.044 3.956 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.269 1.269 19 C -0.115 4.115 20 C 0.103 3.897 21 C -0.038 4.038 22 C -0.052 4.052 23 N 0.031 4.969 24 O -0.193 6.193 25 O -0.148 6.148 26 C -0.033 4.033 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.005 0.995 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.589 -13.130 8.829 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.069 4.069 3 C -0.041 4.041 4 C -0.125 4.125 5 C 0.345 3.655 6 O -0.451 6.451 7 N -0.320 5.320 8 C -0.002 4.002 9 C -0.149 4.149 10 C 0.026 3.974 11 C -0.571 4.571 12 H 0.071 0.929 13 C -0.183 4.183 14 N -0.554 5.554 15 Si 0.776 3.224 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.153 4.153 20 C -0.019 4.019 21 C -0.058 4.058 22 C -0.135 4.135 23 N 0.548 4.452 24 O -0.401 6.401 25 O -0.369 6.369 26 C -0.052 4.052 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.174 0.826 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.861 -11.879 9.245 21.152 hybrid contribution 0.980 0.504 -1.018 1.500 sum -13.880 -11.375 8.227 19.742 Atomic orbital electron populations 1.20999 0.85897 1.05457 1.04791 1.20187 0.99132 0.89720 0.97855 1.21788 0.91385 1.00712 0.90205 1.19690 0.95186 0.91531 1.06101 1.18412 0.79533 0.86816 0.80764 1.90770 1.67917 1.46589 1.39810 1.48220 1.35646 1.15246 1.32931 1.21693 0.96264 0.83706 0.98583 1.21788 0.99116 1.01879 0.92166 1.18630 0.93720 0.91299 0.93785 1.21549 1.29486 1.09936 0.96140 0.92949 1.25673 0.94946 0.97130 1.00580 1.69962 1.31888 1.19030 1.34501 0.85688 0.77304 0.78473 0.80974 1.20428 1.21093 1.19339 1.21865 1.00171 0.98542 0.94743 1.22200 1.01585 0.89197 0.88924 1.21084 1.02250 0.89192 0.93228 1.20977 0.93373 0.82368 1.16770 1.43766 1.01202 1.03141 0.97059 1.94591 0.95949 1.94436 1.55167 1.94498 1.69188 1.20863 1.52379 1.21439 0.89805 1.01868 0.92081 0.88582 0.89517 0.88686 0.82318 0.90524 0.91460 0.95439 0.90482 0.97727 0.92996 0.91053 0.93096 0.90043 0.88543 0.82605 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 71.24 0.71 0.07 16 2 C -0.07 -0.85 5.87 -19.90 -0.12 -0.97 16 3 C -0.02 -0.40 9.39 22.53 0.21 -0.19 16 4 C -0.12 -2.89 4.99 -20.09 -0.10 -2.99 16 5 C 0.56 17.68 7.23 86.79 0.63 18.30 16 6 O -0.57 -21.55 16.47 -3.89 -0.06 -21.61 16 7 N -0.59 -19.68 2.97 -822.29 -2.45 -22.13 16 8 C 0.12 4.56 6.42 86.36 0.55 5.11 16 9 C -0.11 -5.01 5.16 30.69 0.16 -4.85 16 10 C 0.04 2.06 2.06 -11.50 -0.02 2.03 16 11 C -0.53 -27.95 8.56 25.60 0.22 -27.73 16 12 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 13 C 0.02 0.83 5.30 84.65 0.45 1.28 16 14 N -0.91 -50.78 11.30 21.45 0.24 -50.54 16 15 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 C -0.12 -4.23 5.30 30.67 0.16 -4.07 16 20 C 0.10 3.09 5.40 86.36 0.47 3.56 16 21 C -0.04 -0.85 6.88 22.52 0.15 -0.69 16 22 C -0.05 -1.06 6.84 36.34 0.25 -0.81 16 23 N 0.03 0.76 4.45 -46.55 -0.21 0.56 16 24 O -0.19 -5.41 18.44 18.88 0.35 -5.06 16 25 O -0.15 -3.56 18.44 18.89 0.35 -3.21 16 26 C -0.03 -0.47 9.20 22.33 0.21 -0.26 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 29 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.08 2.96 7.02 -2.39 -0.02 2.94 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 3.97 6.03 -2.39 -0.01 3.95 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 36 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.10 2.43 4.57 -2.39 -0.01 2.41 16 41 H 0.16 3.56 6.66 -2.91 -0.02 3.54 16 42 H 0.18 1.68 7.60 -2.91 -0.02 1.65 16 Total: -1.00 -64.95 350.72 5.22 -59.73 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.05 Total: 10.12 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 3.93 Total: -12.20 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -2.41 Total: -72.11 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: 0.63 Total: -29.89 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -64.95 5.22 -59.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397119039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.587 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds