Wall clock time and date at job start Tue Mar 31 2020 12:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.92604 * 2 1 4 4 C 1.38345 * 120.28759 * 180.25868 * 3 2 1 5 5 C 1.37975 * 120.14557 * 359.47998 * 4 3 2 6 6 N 1.48016 * 120.07125 * 180.23885 * 5 4 3 7 7 O 1.21803 * 119.99944 * 355.49398 * 6 5 4 8 8 O 1.21803 * 119.99869 * 175.49857 * 6 5 4 9 9 C 1.39551 * 119.85362 * 0.25945 * 5 4 3 10 10 C 1.47846 * 120.14529 * 180.02562 * 9 5 4 11 11 O 1.21550 * 120.00293 * 62.93101 * 10 9 5 12 12 N 1.34774 * 119.99936 * 242.93913 * 10 9 5 13 13 C 1.46930 * 120.63105 * 5.52062 * 12 10 9 14 14 C 1.53619 * 108.54213 * 126.37232 * 13 12 10 15 15 C 1.53037 * 109.24443 * 54.85669 * 14 13 12 16 16 C 1.50701 * 109.44951 * 178.49450 * 15 14 13 17 17 H 1.07999 * 119.99581 * 120.06912 * 16 15 14 18 18 C 1.37872 * 120.00128 * 300.06393 * 16 15 14 19 19 N 1.31517 * 119.99934 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00131 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47414 * 90.00070 * 20 18 16 22 22 H 1.48502 * 109.47188 * 210.00168 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99676 * 20 18 16 24 24 C 1.53036 * 109.54096 * 298.51233 * 15 14 13 25 25 C 1.46925 * 120.63145 * 185.80647 * 12 10 9 26 26 C 1.37939 * 119.92830 * 179.73421 * 2 1 3 27 27 H 1.09005 * 109.46945 * 270.26097 * 1 2 3 28 28 H 1.08999 * 109.46890 * 30.25823 * 1 2 3 29 29 H 1.08994 * 109.47020 * 150.26024 * 1 2 3 30 30 H 1.08001 * 119.85819 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.91972 * 179.76198 * 4 3 2 32 32 H 1.09004 * 109.58693 * 246.20690 * 13 12 10 33 33 H 1.09001 * 109.58337 * 6.63207 * 13 12 10 34 34 H 1.09004 * 109.63669 * 294.86458 * 14 13 12 35 35 H 1.08999 * 109.43277 * 174.72920 * 14 13 12 36 36 H 1.09005 * 109.45930 * 58.53441 * 15 14 13 37 37 H 0.96996 * 120.00157 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.49583 * 301.41432 * 24 15 14 39 39 H 1.09000 * 109.50275 * 181.31347 * 24 15 14 40 40 H 1.08993 * 109.58787 * 353.36834 * 25 12 10 41 41 H 1.09000 * 109.58678 * 113.65468 * 25 12 10 42 42 H 1.08005 * 120.07202 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0054 5 6 4.2813 0.0193 0.0000 6 7 5.7614 0.0306 -0.0004 7 8 6.3623 1.0864 -0.0884 8 8 6.3784 -1.0159 0.0871 9 6 3.5912 -1.1936 0.0055 10 6 4.3352 -2.4711 0.0119 11 8 5.0546 -2.7508 0.9508 12 7 4.2160 -3.3256 -1.0236 13 6 3.4478 -2.9510 -2.2187 14 6 4.3407 -3.1438 -3.4537 15 6 4.8720 -4.5789 -3.4729 16 6 5.7189 -4.7841 -4.7024 17 1 6.7571 -5.0640 -4.6023 18 6 5.1682 -4.6146 -5.9550 19 7 5.9072 -4.7941 -7.0280 20 14 3.3722 -4.1312 -6.1280 21 1 3.2578 -2.6508 -6.1499 22 1 2.8293 -4.6884 -7.3930 23 1 2.6015 -4.6704 -4.9788 24 6 5.7191 -4.8278 -2.2229 25 6 4.8464 -4.6519 -0.9761 26 6 2.1952 -1.1954 0.0055 27 1 -0.3633 0.0047 1.0277 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6539 2.1326 0.0004 31 1 4.1135 2.1475 -0.0093 32 1 2.5653 -3.5857 -2.2996 33 1 3.1439 -1.9067 -2.1452 34 1 5.1776 -2.4466 -3.4131 35 1 3.7569 -2.9599 -4.3556 36 1 4.0342 -5.2761 -3.4886 37 1 5.5199 -4.6745 -7.9092 38 1 6.5429 -4.1148 -2.1938 39 1 6.1163 -5.8426 -2.2486 40 1 5.4657 -4.7303 -0.0826 41 1 4.0757 -5.4223 -0.9554 42 1 1.6552 -2.1308 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397121688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:01 Heat of formation + Delta-G solvation = -6.917123 kcal Electronic energy + Delta-G solvation = -27660.207642 eV Core-core repulsion = 23801.728968 eV Total energy + Delta-G solvation = -3858.478675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20341 -40.49803 -39.14658 -37.16375 -36.34369 -33.80619 -33.66773 -32.29888 -31.28889 -30.49654 -28.86277 -26.76603 -25.36656 -24.44465 -22.99634 -22.67380 -22.01574 -20.37701 -19.43403 -18.65780 -18.36622 -17.50031 -17.25575 -16.72791 -16.25509 -15.94848 -15.34192 -14.93360 -14.86995 -14.49001 -14.33521 -13.82583 -13.52651 -13.20917 -12.96841 -12.84640 -12.71086 -12.63316 -12.53437 -12.15620 -12.07628 -11.93771 -11.39523 -11.11252 -10.97816 -10.93960 -10.79598 -10.26037 -10.23310 -9.92908 -9.79620 -9.70456 -9.57404 -9.37202 -9.12529 -8.60666 -8.29895 -6.12173 -4.11308 -0.37212 0.40701 1.23326 1.37204 2.52480 2.78823 3.09313 3.16045 3.24809 3.30728 3.96502 4.07166 4.09099 4.32616 4.35439 4.50498 4.65406 4.91277 5.01747 5.06675 5.16269 5.23957 5.28913 5.30940 5.43566 5.50841 5.55438 5.70184 5.73567 5.77648 5.91401 5.93818 6.12151 6.23933 6.40059 6.52722 6.60376 6.71354 6.84478 7.14524 7.43597 7.50517 7.69751 7.71706 8.16842 8.47942 8.93390 9.49289 11.01386 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.004776 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.763601 B = 5860.752260 C = 6521.962974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.110 4.110 4 C -0.052 4.052 5 C -0.020 4.020 6 N 0.020 4.980 7 O -0.173 6.173 8 O -0.114 6.114 9 C -0.044 4.044 10 C 0.552 3.448 11 O -0.506 6.506 12 N -0.590 5.590 13 C 0.100 3.900 14 C -0.135 4.135 15 C 0.016 3.984 16 C -0.512 4.512 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.884 3.116 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.265 1.265 24 C -0.114 4.114 25 C 0.112 3.888 26 C -0.094 4.094 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 11.150 14.654 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.103 4.103 6 N 0.542 4.458 7 O -0.383 6.383 8 O -0.338 6.338 9 C -0.049 4.049 10 C 0.337 3.663 11 O -0.382 6.382 12 N -0.323 5.323 13 C -0.023 4.023 14 C -0.173 4.173 15 C -0.003 4.003 16 C -0.550 4.550 17 H 0.093 0.907 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.715 3.285 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.190 1.190 24 C -0.152 4.152 25 C -0.010 4.010 26 C -0.113 4.113 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.855 11.023 14.946 23.782 hybrid contribution -0.568 0.499 -0.488 0.900 sum -15.423 11.522 14.458 24.076 Atomic orbital electron populations 1.20960 0.89169 1.04259 1.03527 1.20314 0.97551 0.92447 0.93437 1.21215 0.92403 0.98894 1.00383 1.21024 0.94671 0.97053 0.94370 1.21099 0.80355 0.95515 1.13380 1.43519 1.03090 1.00859 0.98339 1.94501 1.69276 1.20486 1.54004 1.94729 1.67838 1.20550 1.50683 1.19993 0.94645 0.93166 0.97082 1.17835 0.81640 0.82954 0.83841 1.90826 1.36779 1.75247 1.35302 1.48012 1.51847 1.16439 1.15988 1.22084 0.94903 0.99465 0.85817 1.22470 0.98513 1.02236 0.94031 1.19131 0.95764 0.90930 0.94497 1.21053 0.98543 1.46847 0.88542 0.90662 1.25046 0.97431 0.94909 0.95929 1.69896 1.36173 1.49694 0.97967 0.86895 0.86345 0.78238 0.77067 1.20708 1.22353 1.18999 1.21834 0.98256 1.01992 0.93137 1.21850 0.96827 0.81316 1.00964 1.21232 0.90822 0.99595 0.99687 0.89776 0.90306 0.90269 0.83250 0.82418 0.91250 0.91586 0.91656 0.92348 0.95330 0.92640 0.91825 0.91041 0.89325 0.91670 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.04 -0.27 5.87 -104.68 -0.61 -0.89 16 3 C -0.11 -0.78 9.69 -39.49 -0.38 -1.16 16 4 C -0.05 -0.52 9.55 -39.64 -0.38 -0.90 16 5 C -0.02 -0.28 6.87 -79.55 -0.55 -0.83 16 6 N 0.02 0.36 4.45 34.15 0.15 0.51 16 7 O -0.17 -2.94 18.46 -29.46 -0.54 -3.49 16 8 O -0.11 -2.31 15.13 -36.96 -0.56 -2.87 16 9 C -0.04 -0.62 4.25 -104.97 -0.45 -1.06 16 10 C 0.55 9.41 5.57 -12.33 -0.07 9.34 16 11 O -0.51 -10.09 14.45 -18.37 -0.27 -10.35 16 12 N -0.59 -9.87 2.97 -173.62 -0.51 -10.39 16 13 C 0.10 1.60 5.98 -3.49 -0.02 1.58 16 14 C -0.13 -2.75 4.86 -26.39 -0.13 -2.88 16 15 C 0.02 0.35 1.65 -91.73 -0.15 0.20 16 16 C -0.51 -14.01 9.14 -34.44 -0.31 -14.32 16 17 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 19 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 20 Si 0.88 20.87 24.38 -169.99 -4.14 16.73 16 21 H -0.28 -6.41 6.85 56.52 0.39 -6.02 16 22 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.26 -5.78 6.53 56.52 0.37 -5.41 16 24 C -0.11 -2.24 5.30 -26.61 -0.14 -2.38 16 25 C 0.11 1.87 6.44 -3.71 -0.02 1.85 16 26 C -0.09 -0.93 8.05 -39.19 -0.32 -1.25 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 29 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.16 1.31 7.61 -52.49 -0.40 0.91 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.94 5.74 -51.93 -0.30 0.64 16 34 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 1.24 3.24 -51.93 -0.17 1.08 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.50 7.00 -51.93 -0.36 1.13 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -34.18 341.20 -8.66 -42.84 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.43 Total: -0.70 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -3.27 Total: -11.02 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.41 Total: -36.28 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.37 Total: -16.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.18 -8.66 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397121688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.922 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds