Wall clock time and date at job start Tue Mar 31 2020 12:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.92604 * 2 1 4 4 C 1.38345 * 120.28759 * 180.25868 * 3 2 1 5 5 C 1.37975 * 120.14557 * 359.47998 * 4 3 2 6 6 N 1.48016 * 120.07125 * 180.23885 * 5 4 3 7 7 O 1.21803 * 119.99944 * 355.49398 * 6 5 4 8 8 O 1.21803 * 119.99869 * 175.49857 * 6 5 4 9 9 C 1.39551 * 119.85362 * 0.25945 * 5 4 3 10 10 C 1.47846 * 120.14529 * 180.02562 * 9 5 4 11 11 O 1.21550 * 120.00293 * 62.93101 * 10 9 5 12 12 N 1.34774 * 119.99936 * 242.93913 * 10 9 5 13 13 C 1.46930 * 120.63105 * 5.52062 * 12 10 9 14 14 C 1.53619 * 108.54213 * 126.37232 * 13 12 10 15 15 C 1.53037 * 109.24443 * 54.85669 * 14 13 12 16 16 C 1.50701 * 109.44951 * 178.49450 * 15 14 13 17 17 H 1.07999 * 119.99581 * 120.06912 * 16 15 14 18 18 C 1.37872 * 120.00128 * 300.06393 * 16 15 14 19 19 N 1.31517 * 119.99934 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00131 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47414 * 90.00070 * 20 18 16 22 22 H 1.48502 * 109.47188 * 210.00168 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99676 * 20 18 16 24 24 C 1.53036 * 109.54096 * 298.51233 * 15 14 13 25 25 C 1.46925 * 120.63145 * 185.80647 * 12 10 9 26 26 C 1.37939 * 119.92830 * 179.73421 * 2 1 3 27 27 H 1.09005 * 109.46945 * 270.26097 * 1 2 3 28 28 H 1.08999 * 109.46890 * 30.25823 * 1 2 3 29 29 H 1.08994 * 109.47020 * 150.26024 * 1 2 3 30 30 H 1.08001 * 119.85819 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.91972 * 179.76198 * 4 3 2 32 32 H 1.09004 * 109.58693 * 246.20690 * 13 12 10 33 33 H 1.09001 * 109.58337 * 6.63207 * 13 12 10 34 34 H 1.09004 * 109.63669 * 294.86458 * 14 13 12 35 35 H 1.08999 * 109.43277 * 174.72920 * 14 13 12 36 36 H 1.09005 * 109.45930 * 58.53441 * 15 14 13 37 37 H 0.96996 * 120.00157 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.49583 * 301.41432 * 24 15 14 39 39 H 1.09000 * 109.50275 * 181.31347 * 24 15 14 40 40 H 1.08993 * 109.58787 * 353.36834 * 25 12 10 41 41 H 1.09000 * 109.58678 * 113.65468 * 25 12 10 42 42 H 1.08005 * 120.07202 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0054 5 6 4.2813 0.0193 0.0000 6 7 5.7614 0.0306 -0.0004 7 8 6.3623 1.0864 -0.0884 8 8 6.3784 -1.0159 0.0871 9 6 3.5912 -1.1936 0.0055 10 6 4.3352 -2.4711 0.0119 11 8 5.0546 -2.7508 0.9508 12 7 4.2160 -3.3256 -1.0236 13 6 3.4478 -2.9510 -2.2187 14 6 4.3407 -3.1438 -3.4537 15 6 4.8720 -4.5789 -3.4729 16 6 5.7189 -4.7841 -4.7024 17 1 6.7571 -5.0640 -4.6023 18 6 5.1682 -4.6146 -5.9550 19 7 5.9072 -4.7941 -7.0280 20 14 3.3722 -4.1312 -6.1280 21 1 3.2578 -2.6508 -6.1499 22 1 2.8293 -4.6884 -7.3930 23 1 2.6015 -4.6704 -4.9788 24 6 5.7191 -4.8278 -2.2229 25 6 4.8464 -4.6519 -0.9761 26 6 2.1952 -1.1954 0.0055 27 1 -0.3633 0.0047 1.0277 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6539 2.1326 0.0004 31 1 4.1135 2.1475 -0.0093 32 1 2.5653 -3.5857 -2.2996 33 1 3.1439 -1.9067 -2.1452 34 1 5.1776 -2.4466 -3.4131 35 1 3.7569 -2.9599 -4.3556 36 1 4.0342 -5.2761 -3.4886 37 1 5.5199 -4.6745 -7.9092 38 1 6.5429 -4.1148 -2.1938 39 1 6.1163 -5.8426 -2.2486 40 1 5.4657 -4.7303 -0.0826 41 1 4.0757 -5.4223 -0.9554 42 1 1.6552 -2.1308 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397121688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:01 Heat of formation + Delta-G solvation = -28.403697 kcal Electronic energy + Delta-G solvation = -27661.139370 eV Core-core repulsion = 23801.728968 eV Total energy + Delta-G solvation = -3859.410402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.38534 -41.63860 -40.14900 -38.64204 -37.64574 -35.42372 -34.49921 -33.72347 -32.76867 -31.84103 -29.62962 -28.42576 -26.36155 -25.56031 -24.35319 -24.12375 -23.05980 -21.74957 -20.73433 -19.90267 -19.54131 -18.92788 -18.68820 -18.36209 -17.34374 -17.01884 -16.64446 -15.98789 -15.89645 -15.68715 -15.18686 -15.08920 -14.96916 -14.76451 -14.33454 -14.21316 -13.78415 -13.60608 -13.40303 -13.25454 -13.15860 -12.87238 -12.74276 -12.65292 -12.35373 -12.33778 -12.23709 -12.14456 -11.89067 -11.53907 -11.28996 -11.09135 -11.07025 -10.70586 -10.42831 -10.34861 -9.70851 -8.29632 -6.35690 -1.42668 -0.32334 0.17181 0.31983 1.28519 1.32440 1.36973 1.48446 1.79203 2.16699 2.33240 2.99149 3.05150 3.22680 3.50514 3.71322 3.79066 3.84654 3.90387 4.06244 4.09398 4.21187 4.36067 4.40250 4.45974 4.54840 4.63568 4.67769 4.72029 4.73572 4.85957 4.88874 4.92892 5.05621 5.06195 5.19670 5.21028 5.31949 5.47637 5.48827 5.63897 5.68901 6.20909 6.29792 6.36973 6.71219 6.91640 7.29447 8.87963 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.004776 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.763601 B = 5860.752260 C = 6521.962974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.015 4.015 3 C -0.091 4.091 4 C -0.049 4.049 5 C -0.053 4.053 6 N 0.023 4.977 7 O -0.153 6.153 8 O -0.207 6.207 9 C -0.072 4.072 10 C 0.551 3.449 11 O -0.547 6.547 12 N -0.595 5.595 13 C 0.108 3.892 14 C -0.133 4.133 15 C 0.018 3.982 16 C -0.525 4.525 17 H 0.021 0.979 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.300 1.300 23 H -0.224 1.224 24 C -0.109 4.109 25 C 0.119 3.881 26 C -0.091 4.091 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.197 0.803 31 H 0.173 0.827 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 13.603 15.862 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.015 4.015 3 C -0.109 4.109 4 C -0.068 4.068 5 C -0.137 4.137 6 N 0.537 4.463 7 O -0.374 6.374 8 O -0.410 6.410 9 C -0.076 4.076 10 C 0.338 3.662 11 O -0.425 6.425 12 N -0.327 5.327 13 C -0.014 4.014 14 C -0.171 4.171 15 C -0.001 4.001 16 C -0.563 4.563 17 H 0.040 0.960 18 C -0.193 4.193 19 N -0.596 5.596 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.228 1.228 23 H -0.147 1.147 24 C -0.147 4.147 25 C -0.002 4.002 26 C -0.110 4.110 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.214 0.786 31 H 0.191 0.809 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -21.191 13.324 16.195 29.814 hybrid contribution 1.413 -0.087 -0.867 1.660 sum -19.779 13.237 15.328 28.308 Atomic orbital electron populations 1.21128 0.85972 1.05860 1.04962 1.20818 0.99507 0.91321 0.89893 1.21805 0.90872 1.00889 0.97314 1.21430 0.96072 0.95930 0.93342 1.21393 0.77460 0.97522 1.17281 1.44094 1.05019 1.00110 0.97110 1.94421 1.70802 1.20265 1.51930 1.94742 1.69566 1.21168 1.55556 1.19878 0.96149 0.91127 1.00456 1.18350 0.80996 0.83748 0.83062 1.90786 1.38525 1.76256 1.36966 1.48075 1.51946 1.16299 1.16414 1.22111 0.94419 1.01961 0.82873 1.22307 0.98478 0.99645 0.96650 1.19080 0.95566 0.92782 0.92677 1.21386 0.97088 1.46471 0.91356 0.96020 1.26093 1.03476 0.94687 0.95088 1.70091 1.39038 1.51697 0.98746 0.85783 0.79491 0.78757 0.78177 1.19088 1.22753 1.14656 1.21713 0.97718 1.01020 0.94237 1.21724 0.97201 0.82808 0.98479 1.21580 0.88796 1.01875 0.98727 0.88091 0.88129 0.89377 0.78567 0.80920 0.87648 0.89186 0.94683 0.92361 0.93645 0.92605 0.95207 0.91073 0.90118 0.88347 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.10 10.01 71.24 0.71 0.62 16 2 C -0.01 -0.12 5.87 -19.90 -0.12 -0.24 16 3 C -0.09 -0.72 9.69 22.33 0.22 -0.50 16 4 C -0.05 -0.80 9.55 22.23 0.21 -0.59 16 5 C -0.05 -1.44 6.87 36.63 0.25 -1.19 16 6 N 0.02 0.86 4.45 -45.86 -0.20 0.66 16 7 O -0.15 -5.34 18.46 18.88 0.35 -4.99 16 8 O -0.21 -9.18 15.13 26.05 0.39 -8.79 16 9 C -0.07 -1.88 4.25 -20.09 -0.09 -1.96 16 10 C 0.55 18.89 5.57 86.79 0.48 19.37 16 11 O -0.55 -22.99 14.45 18.79 0.27 -22.72 16 12 N -0.60 -19.40 2.97 -821.48 -2.44 -21.84 16 13 C 0.11 3.14 5.98 86.51 0.52 3.65 16 14 C -0.13 -5.29 4.86 30.81 0.15 -5.14 16 15 C 0.02 0.79 1.65 -11.51 -0.02 0.78 16 16 C -0.53 -30.25 9.14 25.60 0.23 -30.02 16 17 H 0.02 1.42 7.99 -2.91 -0.02 1.39 16 18 C 0.00 0.16 5.45 84.65 0.46 0.62 16 19 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 20 Si 0.95 42.04 24.38 68.60 1.67 43.71 16 21 H -0.26 -11.00 6.85 99.48 0.68 -10.32 16 22 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.22 -8.36 6.53 99.48 0.65 -7.71 16 24 C -0.11 -4.47 5.30 30.67 0.16 -4.31 16 25 C 0.12 4.00 6.44 86.36 0.56 4.55 16 26 C -0.09 -1.38 8.05 22.53 0.18 -1.20 16 27 H 0.10 -0.11 8.14 -2.38 -0.02 -0.13 16 28 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 29 H 0.09 0.03 8.08 -2.39 -0.02 0.01 16 30 H 0.20 -0.19 8.06 -2.91 -0.02 -0.21 16 31 H 0.17 2.25 7.61 -2.91 -0.02 2.23 16 32 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.09 2.21 5.74 -2.39 -0.01 2.20 16 34 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.06 2.32 3.24 -2.39 -0.01 2.31 16 36 H 0.05 1.90 7.20 -2.38 -0.02 1.89 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.08 2.84 7.00 -2.39 -0.02 2.83 16 41 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -85.91 341.20 5.23 -80.68 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.97 Total: 9.00 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.92 Total: -15.56 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.34 Total: -81.34 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: 1.01 Total: -36.50 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.67 Total: 43.71 kcal Total: -85.91 5.23 -80.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397121688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -85.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds