Wall clock time and date at job start Tue Mar 31 2020 13:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37978 * 119.92716 * 2 1 4 4 C 1.39553 * 119.85059 * 179.74695 * 3 2 1 5 5 C 1.47849 * 120.14422 * 180.27885 * 4 3 2 6 6 O 1.21548 * 120.00191 * 37.03028 * 5 4 3 7 7 N 1.34779 * 119.99899 * 217.03280 * 5 4 3 8 8 C 1.46924 * 120.63065 * 185.44941 * 7 5 4 9 9 C 1.52764 * 109.00908 * 233.58720 * 8 7 5 10 10 C 1.53041 * 109.38060 * 305.58587 * 9 8 7 11 11 C 1.50694 * 109.45102 * 181.25507 * 10 9 8 12 12 H 1.08000 * 120.00155 * 244.91431 * 11 10 9 13 13 C 1.37875 * 120.00160 * 64.90846 * 11 10 9 14 14 N 1.31524 * 119.99973 * 355.40787 * 13 11 10 15 15 Si 1.86804 * 120.00395 * 175.40307 * 13 11 10 16 16 H 1.48494 * 109.47064 * 95.00229 * 15 13 11 17 17 H 1.48501 * 109.47238 * 215.00340 * 15 13 11 18 18 H 1.48505 * 109.46745 * 334.99840 * 15 13 11 19 19 C 1.53038 * 109.53974 * 61.24132 * 10 9 8 20 20 C 1.46932 * 120.63121 * 5.72777 * 7 5 4 21 21 C 1.39601 * 119.71488 * 0.25505 * 4 3 2 22 22 C 1.37934 * 119.84884 * 359.97438 * 21 4 3 23 23 C 1.38340 * 119.92595 * 180.25584 * 2 1 3 24 24 N 1.48014 * 119.85583 * 0.02562 * 23 2 1 25 25 O 1.21802 * 119.99739 * 186.89091 * 24 23 2 26 26 O 1.21796 * 119.99974 * 6.87692 * 24 23 2 27 27 H 1.09005 * 109.47374 * 97.32767 * 1 2 3 28 28 H 1.08999 * 109.47598 * 217.33428 * 1 2 3 29 29 H 1.09007 * 109.47278 * 337.33007 * 1 2 3 30 30 H 1.07995 * 120.07462 * 0.02949 * 3 2 1 31 31 H 1.09000 * 109.58783 * 353.41734 * 8 7 5 32 32 H 1.09003 * 109.58950 * 113.84445 * 8 7 5 33 33 H 1.08997 * 109.56523 * 185.55392 * 9 8 7 34 34 H 1.08994 * 109.36332 * 65.49682 * 9 8 7 35 35 H 1.08998 * 109.45994 * 301.22145 * 10 9 8 36 36 H 0.96998 * 119.99603 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.50303 * 178.68670 * 19 10 9 38 38 H 1.08996 * 109.50140 * 58.58404 * 19 10 9 39 39 H 1.08991 * 109.58502 * 246.15731 * 20 7 5 40 40 H 1.08994 * 109.58608 * 6.44073 * 20 7 5 41 41 H 1.07997 * 120.07698 * 179.97438 * 21 4 3 42 42 H 1.08001 * 119.92469 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5908 1.1939 0.0053 5 6 4.3350 2.4715 0.0116 6 8 3.9123 3.4179 0.6464 7 7 5.4820 2.5867 -0.6867 8 6 6.2943 3.8076 -0.5960 9 6 6.5479 4.3423 -2.0043 10 6 7.1673 3.2373 -2.8631 11 6 7.4466 3.7721 -4.2440 12 1 6.9177 3.3707 -5.0958 13 6 8.3774 4.7739 -4.4201 14 7 8.9555 5.3254 -3.3753 15 14 8.8176 5.3479 -6.1424 16 1 7.9970 6.5347 -6.4934 17 1 10.2571 5.7094 -6.1909 18 1 8.5486 4.2556 -7.1119 19 6 6.1956 2.0589 -2.9597 20 6 5.9408 1.4960 -1.5579 21 6 4.2812 -0.0194 0.0053 22 6 3.5809 -1.2077 0.0004 23 6 2.1971 -1.1989 -0.0054 24 7 1.4522 -2.4779 -0.0116 25 8 2.0506 -3.5318 0.1102 26 8 0.2408 -2.4765 -0.1384 27 1 -0.3634 -0.1311 -1.0193 28 1 -0.3634 -0.8171 0.6232 29 1 -0.3634 0.9483 0.3961 30 1 1.6554 2.1311 0.0005 31 1 5.7616 4.5583 -0.0121 32 1 7.2468 3.5782 -0.1181 33 1 7.2306 5.1906 -1.9552 34 1 5.6034 4.6599 -2.4458 35 1 8.0994 2.9029 -2.4078 36 1 9.6106 6.0300 -3.4993 37 1 6.6275 1.2819 -3.5906 38 1 5.2544 2.3979 -3.3922 39 1 6.8638 1.0743 -1.1600 40 1 5.1761 0.7209 -1.6065 41 1 5.3611 -0.0277 0.0090 42 1 4.1137 -2.1471 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397122030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:52 Heat of formation + Delta-G solvation = -10.024460 kcal Electronic energy + Delta-G solvation = -26527.372734 eV Core-core repulsion = 22668.759315 eV Total energy + Delta-G solvation = -3858.613419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49624 -40.75968 -38.97550 -37.07173 -36.89515 -34.13830 -33.27233 -32.34610 -31.22282 -30.38067 -28.24524 -26.93511 -26.05739 -23.88442 -23.16908 -22.44091 -22.26397 -20.36653 -19.34513 -18.91330 -18.81916 -17.82779 -17.18900 -16.57939 -16.27441 -15.68100 -15.12535 -14.87711 -14.64382 -14.51225 -14.15139 -13.91649 -13.43035 -13.09403 -13.07586 -12.99584 -12.82049 -12.70816 -12.38025 -12.03156 -11.73385 -11.61469 -11.34791 -11.32205 -11.03654 -10.95255 -10.76590 -10.58267 -10.26694 -10.01708 -9.83853 -9.71434 -9.56716 -9.20423 -9.06849 -8.51609 -8.26154 -6.13235 -4.19259 -0.55923 0.56525 0.92954 1.14801 2.44206 2.92717 3.20590 3.21938 3.30039 3.32768 3.97392 3.98874 4.16358 4.33169 4.45916 4.49444 4.77296 4.99491 5.14498 5.17502 5.21111 5.25160 5.32725 5.49691 5.54145 5.62055 5.69714 5.71590 5.83373 5.86071 6.04167 6.20774 6.25572 6.25901 6.41679 6.58374 6.77492 7.00147 7.15160 7.43233 7.54809 7.55805 7.77678 7.90620 8.11773 8.27977 8.84358 9.46617 10.93090 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.002899 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.202196 B = 9657.509099 C =10138.652609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 C -0.074 4.074 4 C -0.060 4.060 5 C 0.546 3.454 6 O -0.536 6.536 7 N -0.586 5.586 8 C 0.108 3.892 9 C -0.122 4.122 10 C 0.049 3.951 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.125 4.125 20 C 0.090 3.910 21 C -0.099 4.099 22 C -0.057 4.057 23 C -0.038 4.038 24 N 0.032 4.968 25 O -0.166 6.166 26 O -0.157 6.157 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 -11.029 7.668 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 C -0.093 4.093 4 C -0.063 4.063 5 C 0.333 3.667 6 O -0.415 6.415 7 N -0.317 5.317 8 C -0.013 4.013 9 C -0.161 4.161 10 C 0.030 3.970 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.032 4.032 21 C -0.118 4.118 22 C -0.076 4.076 23 C -0.122 4.122 24 N 0.549 4.451 25 O -0.380 6.380 26 O -0.372 6.372 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.176 0.824 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.672 -9.774 8.039 16.554 hybrid contribution 0.276 0.020 -1.043 1.079 sum -10.395 -9.753 6.996 15.878 Atomic orbital electron populations 1.21312 0.88047 1.04645 1.04758 1.19828 0.98322 0.90067 0.93868 1.21201 0.92501 0.97827 0.97782 1.20575 0.94495 0.94566 0.96670 1.18106 0.81122 0.86820 0.80677 1.90792 1.67542 1.38922 1.44262 1.48216 1.21734 1.19002 1.42739 1.21931 0.93394 0.84904 1.01058 1.21963 1.00696 1.02432 0.90995 1.18654 0.92844 0.89825 0.95652 1.21147 1.21982 1.19631 0.92664 0.92679 1.24968 0.95992 0.96165 0.96763 1.69860 1.28082 1.25941 1.28912 0.86601 0.77750 0.78979 0.84815 1.20775 1.21136 1.19877 1.22039 1.01139 1.00326 0.92791 1.22375 0.99393 0.88902 0.92548 1.21593 1.01661 0.89890 0.98609 1.20971 0.90790 1.00731 0.95087 1.21109 0.92449 0.83294 1.15311 1.43566 1.01129 1.02733 0.97679 1.94547 1.70419 1.19645 1.53364 1.94476 0.96334 1.93772 1.52610 0.89073 0.88384 0.90498 0.82662 0.90250 0.91648 0.87938 0.94165 0.95120 0.92867 0.91668 0.92804 0.91080 0.90422 0.82355 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.63 36.00 0.31 -0.76 16 2 C -0.02 -0.19 5.87 -104.68 -0.61 -0.81 16 3 C -0.07 -0.80 9.24 -39.19 -0.36 -1.16 16 4 C -0.06 -0.72 5.24 -104.97 -0.55 -1.27 16 5 C 0.55 8.46 7.36 -12.33 -0.09 8.36 16 6 O -0.54 -9.93 16.29 5.32 0.09 -9.84 16 7 N -0.59 -9.27 2.98 -174.14 -0.52 -9.78 16 8 C 0.11 1.94 6.41 -3.93 -0.03 1.91 16 9 C -0.12 -2.62 5.18 -26.83 -0.14 -2.76 16 10 C 0.05 1.08 2.01 -91.73 -0.18 0.89 16 11 C -0.52 -13.12 8.50 -34.44 -0.29 -13.42 16 12 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 13 C 0.06 1.63 5.36 -17.82 -0.10 1.54 16 14 N -0.89 -23.83 11.50 55.43 0.64 -23.19 16 15 Si 0.89 20.29 29.54 -169.99 -5.02 15.26 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.12 -2.21 5.30 -26.61 -0.14 -2.35 16 20 C 0.09 1.25 4.82 -3.70 -0.02 1.24 16 21 C -0.10 -0.96 7.36 -39.18 -0.29 -1.25 16 22 C -0.06 -0.53 9.54 -39.64 -0.38 -0.91 16 23 C -0.04 -0.41 6.83 -79.86 -0.55 -0.96 16 24 N 0.03 0.39 4.45 34.01 0.15 0.54 16 25 O -0.17 -2.12 18.45 -29.46 -0.54 -2.66 16 26 O -0.16 -1.91 15.36 -29.46 -0.45 -2.36 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.84 5.92 -51.93 -0.31 0.53 16 29 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 30 H 0.16 1.57 8.02 -52.49 -0.42 1.15 16 31 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 2.48 6.27 -51.93 -0.33 2.15 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.08 0.89 4.54 -51.93 -0.24 0.65 16 41 H 0.16 1.31 6.23 -52.49 -0.33 0.98 16 42 H 0.16 1.19 7.61 -52.49 -0.40 0.79 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -28.95 344.15 -9.18 -38.13 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.29 Total: 0.41 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.42 Total: -11.69 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.27 Total: -32.43 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.91 Total: -14.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.95 -9.18 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397122030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.106 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds