Wall clock time and date at job start Tue Mar 31 2020 13:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37978 * 119.92716 * 2 1 4 4 C 1.39553 * 119.85059 * 179.74695 * 3 2 1 5 5 C 1.47849 * 120.14422 * 180.27885 * 4 3 2 6 6 O 1.21548 * 120.00191 * 37.03028 * 5 4 3 7 7 N 1.34779 * 119.99899 * 217.03280 * 5 4 3 8 8 C 1.46924 * 120.63065 * 185.44941 * 7 5 4 9 9 C 1.52764 * 109.00908 * 233.58720 * 8 7 5 10 10 C 1.53041 * 109.38060 * 305.58587 * 9 8 7 11 11 C 1.50694 * 109.45102 * 181.25507 * 10 9 8 12 12 H 1.08000 * 120.00155 * 244.91431 * 11 10 9 13 13 C 1.37875 * 120.00160 * 64.90846 * 11 10 9 14 14 N 1.31524 * 119.99973 * 355.40787 * 13 11 10 15 15 Si 1.86804 * 120.00395 * 175.40307 * 13 11 10 16 16 H 1.48494 * 109.47064 * 95.00229 * 15 13 11 17 17 H 1.48501 * 109.47238 * 215.00340 * 15 13 11 18 18 H 1.48505 * 109.46745 * 334.99840 * 15 13 11 19 19 C 1.53038 * 109.53974 * 61.24132 * 10 9 8 20 20 C 1.46932 * 120.63121 * 5.72777 * 7 5 4 21 21 C 1.39601 * 119.71488 * 0.25505 * 4 3 2 22 22 C 1.37934 * 119.84884 * 359.97438 * 21 4 3 23 23 C 1.38340 * 119.92595 * 180.25584 * 2 1 3 24 24 N 1.48014 * 119.85583 * 0.02562 * 23 2 1 25 25 O 1.21802 * 119.99739 * 186.89091 * 24 23 2 26 26 O 1.21796 * 119.99974 * 6.87692 * 24 23 2 27 27 H 1.09005 * 109.47374 * 97.32767 * 1 2 3 28 28 H 1.08999 * 109.47598 * 217.33428 * 1 2 3 29 29 H 1.09007 * 109.47278 * 337.33007 * 1 2 3 30 30 H 1.07995 * 120.07462 * 0.02949 * 3 2 1 31 31 H 1.09000 * 109.58783 * 353.41734 * 8 7 5 32 32 H 1.09003 * 109.58950 * 113.84445 * 8 7 5 33 33 H 1.08997 * 109.56523 * 185.55392 * 9 8 7 34 34 H 1.08994 * 109.36332 * 65.49682 * 9 8 7 35 35 H 1.08998 * 109.45994 * 301.22145 * 10 9 8 36 36 H 0.96998 * 119.99603 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.50303 * 178.68670 * 19 10 9 38 38 H 1.08996 * 109.50140 * 58.58404 * 19 10 9 39 39 H 1.08991 * 109.58502 * 246.15731 * 20 7 5 40 40 H 1.08994 * 109.58608 * 6.44073 * 20 7 5 41 41 H 1.07997 * 120.07698 * 179.97438 * 21 4 3 42 42 H 1.08001 * 119.92469 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5908 1.1939 0.0053 5 6 4.3350 2.4715 0.0116 6 8 3.9123 3.4179 0.6464 7 7 5.4820 2.5867 -0.6867 8 6 6.2943 3.8076 -0.5960 9 6 6.5479 4.3423 -2.0043 10 6 7.1673 3.2373 -2.8631 11 6 7.4466 3.7721 -4.2440 12 1 6.9177 3.3707 -5.0958 13 6 8.3774 4.7739 -4.4201 14 7 8.9555 5.3254 -3.3753 15 14 8.8176 5.3479 -6.1424 16 1 7.9970 6.5347 -6.4934 17 1 10.2571 5.7094 -6.1909 18 1 8.5486 4.2556 -7.1119 19 6 6.1956 2.0589 -2.9597 20 6 5.9408 1.4960 -1.5579 21 6 4.2812 -0.0194 0.0053 22 6 3.5809 -1.2077 0.0004 23 6 2.1971 -1.1989 -0.0054 24 7 1.4522 -2.4779 -0.0116 25 8 2.0506 -3.5318 0.1102 26 8 0.2408 -2.4765 -0.1384 27 1 -0.3634 -0.1311 -1.0193 28 1 -0.3634 -0.8171 0.6232 29 1 -0.3634 0.9483 0.3961 30 1 1.6554 2.1311 0.0005 31 1 5.7616 4.5583 -0.0121 32 1 7.2468 3.5782 -0.1181 33 1 7.2306 5.1906 -1.9552 34 1 5.6034 4.6599 -2.4458 35 1 8.0994 2.9029 -2.4078 36 1 9.6106 6.0300 -3.4993 37 1 6.6275 1.2819 -3.5906 38 1 5.2544 2.3979 -3.3922 39 1 6.8638 1.0743 -1.1600 40 1 5.1761 0.7209 -1.6065 41 1 5.3611 -0.0277 0.0090 42 1 4.1137 -2.1471 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397122030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:51 Heat of formation + Delta-G solvation = -24.121485 kcal Electronic energy + Delta-G solvation = -26527.984026 eV Core-core repulsion = 22668.759315 eV Total energy + Delta-G solvation = -3859.224712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.37952 -41.84885 -40.01912 -38.50050 -37.80014 -35.58510 -34.40833 -33.27076 -32.83790 -31.77749 -29.06927 -28.28457 -27.27402 -25.26061 -24.29331 -23.61421 -23.38839 -21.71421 -20.28590 -20.16582 -19.78916 -18.71721 -18.54969 -18.17227 -17.44635 -16.81255 -16.51879 -16.07918 -15.87566 -15.61502 -15.07518 -14.91052 -14.63609 -14.56776 -14.46359 -14.06415 -13.98565 -13.80529 -13.51885 -13.19886 -13.04945 -12.85095 -12.66366 -12.54655 -12.42219 -12.26929 -12.20676 -11.98858 -11.79318 -11.43897 -11.32619 -11.02644 -10.88701 -10.67308 -10.43468 -10.16233 -9.68682 -8.10726 -6.22793 -1.44938 -0.19695 0.01166 0.29214 1.38148 1.39666 1.42872 1.51255 1.78046 2.21640 2.42664 3.10091 3.17475 3.22125 3.25430 3.66933 3.67236 3.94835 4.07553 4.20799 4.25435 4.33848 4.44025 4.50597 4.52544 4.57201 4.64377 4.67954 4.80745 4.81878 4.89155 4.93211 4.99456 5.06797 5.11979 5.19776 5.38420 5.43875 5.47898 5.63242 5.95771 6.06967 6.30060 6.36836 6.49907 6.87832 6.89196 7.45580 8.93505 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.002899 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.202196 B = 9657.509099 C =10138.652609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 C -0.075 4.075 4 C -0.071 4.071 5 C 0.549 3.451 6 O -0.572 6.572 7 N -0.589 5.589 8 C 0.120 3.880 9 C -0.112 4.112 10 C 0.045 3.955 11 C -0.533 4.533 12 H 0.050 0.950 13 C 0.015 3.985 14 N -0.914 5.914 15 Si 0.946 3.054 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.119 4.119 20 C 0.095 3.905 21 C -0.090 4.090 22 C -0.045 4.045 23 C -0.046 4.046 24 N 0.032 4.968 25 O -0.182 6.182 26 O -0.159 6.159 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.011 0.989 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.180 0.820 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.577 -12.899 7.659 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 C -0.094 4.094 4 C -0.075 4.075 5 C 0.338 3.662 6 O -0.453 6.453 7 N -0.319 5.319 8 C -0.002 4.002 9 C -0.150 4.150 10 C 0.027 3.973 11 C -0.571 4.571 12 H 0.069 0.931 13 C -0.184 4.184 14 N -0.553 5.553 15 Si 0.773 3.227 16 H -0.209 1.209 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.157 4.157 20 C -0.026 4.026 21 C -0.109 4.109 22 C -0.064 4.064 23 C -0.130 4.130 24 N 0.546 4.454 25 O -0.393 6.393 26 O -0.375 6.375 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.176 0.824 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.197 0.803 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.259 -11.691 8.022 18.105 hybrid contribution 0.403 0.620 -1.046 1.281 sum -10.855 -11.071 6.976 17.002 Atomic orbital electron populations 1.21375 0.86821 1.05448 1.05166 1.19956 0.99225 0.89487 0.93047 1.21238 0.92178 0.98294 0.97726 1.20342 0.94740 0.93532 0.98860 1.18541 0.80521 0.87614 0.79570 1.90773 1.68247 1.40646 1.45652 1.48196 1.21848 1.18582 1.43302 1.21583 0.94193 0.86010 0.98428 1.21709 0.98731 1.01431 0.93174 1.18628 0.93244 0.91571 0.93907 1.21568 1.21736 1.19582 0.94209 0.93126 1.25664 0.96290 0.96572 0.99830 1.69981 1.28557 1.26374 1.30411 0.85724 0.77315 0.78461 0.81224 1.20854 1.20980 1.19227 1.21903 0.99280 0.98878 0.95662 1.22499 1.01647 0.88623 0.89807 1.21729 1.02538 0.88879 0.97761 1.21207 0.90217 1.01463 0.93532 1.21322 0.93098 0.82783 1.15778 1.43741 1.01151 1.03050 0.97433 1.94545 1.70401 1.20217 1.54121 1.94474 0.96636 1.93918 1.52461 0.88383 0.88747 0.88871 0.82387 0.90903 0.90830 0.91185 0.95937 0.97061 0.93051 0.90557 0.93822 0.88826 0.87051 0.80323 0.80089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.63 71.23 0.61 -1.24 16 2 C -0.02 -0.28 5.87 -19.90 -0.12 -0.39 16 3 C -0.08 -1.47 9.24 22.53 0.21 -1.26 16 4 C -0.07 -1.54 5.24 -20.09 -0.11 -1.65 16 5 C 0.55 16.19 7.36 86.79 0.64 16.83 16 6 O -0.57 -20.94 16.29 -3.87 -0.06 -21.00 16 7 N -0.59 -17.75 2.98 -823.13 -2.45 -20.20 16 8 C 0.12 4.31 6.41 86.22 0.55 4.86 16 9 C -0.11 -4.91 5.18 30.53 0.16 -4.75 16 10 C 0.05 2.00 2.01 -11.52 -0.02 1.98 16 11 C -0.53 -27.38 8.50 25.60 0.22 -27.16 16 12 H 0.05 2.58 7.75 -2.91 -0.02 2.55 16 13 C 0.02 0.81 5.36 84.65 0.45 1.27 16 14 N -0.91 -50.05 11.50 21.45 0.25 -49.80 16 15 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 C -0.12 -4.05 5.30 30.67 0.16 -3.88 16 20 C 0.10 2.39 4.82 86.36 0.42 2.81 16 21 C -0.09 -1.43 7.36 22.53 0.17 -1.27 16 22 C -0.05 -0.69 9.54 22.23 0.21 -0.47 16 23 C -0.05 -0.87 6.83 36.44 0.25 -0.62 16 24 N 0.03 0.69 4.45 -46.32 -0.21 0.49 16 25 O -0.18 -4.28 18.45 18.88 0.35 -3.93 16 26 O -0.16 -3.57 15.36 18.89 0.29 -3.28 16 27 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.09 1.43 5.92 -2.39 -0.01 1.42 16 29 H 0.09 1.00 8.03 -2.38 -0.02 0.98 16 30 H 0.16 2.96 8.02 -2.91 -0.02 2.94 16 31 H 0.07 2.71 7.00 -2.39 -0.02 2.70 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 3.53 6.27 -2.39 -0.01 3.52 16 34 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 40 H 0.11 2.09 4.54 -2.39 -0.01 2.08 16 41 H 0.18 2.12 6.23 -2.91 -0.02 2.10 16 42 H 0.18 1.95 7.61 -2.91 -0.02 1.92 16 Total: -1.00 -63.68 344.15 5.05 -58.64 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.05 Total: 10.11 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.80 Total: -14.95 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -2.41 Total: -69.51 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: 0.58 Total: -28.21 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.68 5.05 -58.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397122030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.515 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds