Wall clock time and date at job start Tue Mar 31 2020 12:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37978 * 120.07303 * 2 1 4 4 C 1.38336 * 120.14093 * 180.02562 * 3 2 1 5 5 C 1.38387 * 120.29582 * 359.97438 * 4 3 2 6 6 C 1.37935 * 120.14051 * 0.27962 * 5 4 3 7 7 N 1.48016 * 120.07077 * 179.72623 * 6 5 4 8 8 O 1.21803 * 120.00000 * 359.97438 * 7 6 5 9 9 O 1.21794 * 119.99938 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.06942 * 179.97438 * 2 1 3 11 11 C 1.47837 * 120.14686 * 0.02562 * 10 2 1 12 12 O 1.21554 * 120.00696 * 89.99828 * 11 10 2 13 13 N 1.34776 * 119.99882 * 269.99917 * 11 10 2 14 14 C 1.46926 * 120.63223 * 359.71931 * 13 11 10 15 15 C 1.52754 * 109.00933 * 233.58544 * 14 13 11 16 16 C 1.53039 * 109.38416 * 305.58500 * 15 14 13 17 17 C 1.50701 * 109.44925 * 181.25291 * 16 15 14 18 18 H 1.07999 * 120.00228 * 239.93748 * 17 16 15 19 19 C 1.37876 * 120.00188 * 59.94094 * 17 16 15 20 20 N 1.31524 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00392 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46725 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46734 * 120.00072 * 21 19 17 24 24 H 1.48503 * 109.46999 * 240.00174 * 21 19 17 25 25 C 1.53039 * 109.53742 * 61.24334 * 16 15 14 26 26 C 1.46932 * 120.63047 * 180.02562 * 13 11 10 27 27 H 1.08996 * 109.47268 * 89.99132 * 1 2 3 28 28 H 1.08997 * 109.47005 * 210.00435 * 1 2 3 29 29 H 1.09004 * 109.46780 * 329.99354 * 1 2 3 30 30 H 1.07992 * 119.93165 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.85105 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.92594 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.58574 * 353.42119 * 14 13 11 34 34 H 1.09002 * 109.58528 * 113.84327 * 14 13 11 35 35 H 1.09006 * 109.56354 * 185.55232 * 15 14 13 36 36 H 1.09003 * 109.36242 * 65.50066 * 15 14 13 37 37 H 1.09000 * 109.46301 * 301.22003 * 16 15 14 38 38 H 0.97001 * 119.99844 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.50118 * 178.68668 * 25 16 15 40 40 H 1.09003 * 109.52633 * 58.60075 * 25 16 15 41 41 H 1.09001 * 109.58471 * 246.15338 * 26 13 11 42 42 H 1.08990 * 109.58630 * 6.43355 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2813 0.0016 -0.0005 6 6 3.6022 -1.1989 -0.0058 7 7 4.3520 -2.4751 -0.0119 8 8 5.5700 -2.4659 -0.0128 9 8 3.7510 -3.5345 -0.0161 10 6 2.2063 -1.2078 0.0005 11 6 1.4719 -2.4908 0.0005 12 8 1.1704 -3.0187 -1.0521 13 7 1.1368 -3.0754 1.1678 14 6 1.4996 -2.4529 2.4482 15 6 2.2556 -3.4709 3.2999 16 6 1.4162 -4.7434 3.4349 17 6 2.1471 -5.7372 4.3004 18 1 2.4162 -6.7046 3.9027 19 6 2.4722 -5.4116 5.6002 20 7 2.1440 -4.2338 6.0848 21 14 3.3776 -6.6438 6.6733 22 1 3.6287 -7.8850 5.8978 23 1 4.6727 -6.0626 7.1094 24 1 2.5517 -6.9628 7.8655 25 6 1.1801 -5.3502 2.0499 26 6 0.4075 -4.3509 1.1840 27 1 -0.3633 0.0002 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6586 2.1293 -0.0004 31 1 4.1183 2.1330 -0.0010 32 1 5.3613 0.0099 -0.0014 33 1 2.1357 -1.5866 2.2660 34 1 0.5959 -2.1414 2.9721 35 1 2.4430 -3.0521 4.2887 36 1 3.2045 -3.7102 2.8198 37 1 0.4575 -4.4992 3.8926 38 1 2.3730 -4.0046 6.9990 39 1 0.6020 -6.2690 2.1489 40 1 2.1388 -5.5722 1.5812 41 1 -0.5872 -4.1977 1.6025 42 1 0.3210 -4.7352 0.1677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397137884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:06 Heat of formation + Delta-G solvation = -15.630429 kcal Electronic energy + Delta-G solvation = -28118.950979 eV Core-core repulsion = 24260.094468 eV Total energy + Delta-G solvation = -3858.856512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13727 -40.41727 -38.86245 -36.83922 -36.31353 -33.66528 -33.44373 -32.34276 -30.99208 -30.12226 -27.83620 -26.75852 -26.15829 -24.01711 -22.68605 -22.24061 -21.95605 -20.25049 -18.99219 -18.54188 -18.33436 -17.45465 -17.23131 -16.34765 -16.16479 -16.01611 -15.35628 -14.53671 -14.30703 -14.26393 -14.14327 -13.55592 -13.14849 -12.96554 -12.77033 -12.74556 -12.57055 -12.43608 -12.27783 -11.95695 -11.64461 -11.35114 -11.32829 -10.96153 -10.93327 -10.88101 -10.59093 -10.36575 -10.11553 -9.89450 -9.73531 -9.55617 -9.32131 -9.15403 -8.92743 -8.37174 -8.07775 -6.02061 -4.06914 -0.24093 0.54249 1.34553 1.44606 2.66964 2.91731 3.26391 3.29767 3.38091 3.43437 4.05784 4.20748 4.34128 4.43709 4.55925 4.61887 4.77030 5.08638 5.18437 5.27137 5.29514 5.40607 5.45995 5.62723 5.69697 5.77844 5.81578 5.90666 6.01504 6.06293 6.16718 6.23516 6.43472 6.48675 6.67373 6.89289 7.06155 7.15503 7.25467 7.65895 7.77554 7.78969 7.92952 8.03359 8.32530 8.42448 8.96776 9.58249 11.03860 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.004570 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.177114 B = 6124.908437 C = 6454.172208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.073 4.073 4 C -0.106 4.106 5 C -0.063 4.063 6 C -0.015 4.015 7 N 0.022 4.978 8 O -0.164 6.164 9 O -0.122 6.122 10 C -0.048 4.048 11 C 0.562 3.438 12 O -0.534 6.534 13 N -0.580 5.580 14 C 0.105 3.895 15 C -0.122 4.122 16 C 0.051 3.949 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.124 4.124 26 C 0.116 3.884 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 15.030 -10.611 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.082 4.082 6 C -0.098 4.098 7 N 0.544 4.456 8 O -0.377 6.377 9 O -0.343 6.343 10 C -0.053 4.053 11 C 0.348 3.652 12 O -0.413 6.413 13 N -0.312 5.312 14 C -0.017 4.017 15 C -0.161 4.161 16 C 0.032 3.968 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.162 4.162 26 C -0.006 4.006 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.136 15.453 -10.971 19.072 hybrid contribution 0.986 -0.812 0.800 1.507 sum -1.150 14.641 -10.171 17.864 Atomic orbital electron populations 1.20923 0.88888 1.04222 1.03702 1.19992 0.97379 0.90361 0.97929 1.21435 0.94348 0.98061 0.95264 1.21288 0.94134 0.97665 0.99380 1.21027 1.02230 0.89618 0.95323 1.21151 0.90876 0.84979 1.12811 1.43501 1.01221 1.02681 0.98201 1.94503 0.95312 1.94050 1.53811 1.94674 1.70035 1.18090 1.51531 1.19882 0.91094 0.96457 0.97841 1.17705 0.79411 0.83296 0.84781 1.90778 1.55650 1.63960 1.30904 1.48090 1.54904 1.22929 1.05240 1.21956 0.99714 0.96404 0.83655 1.21937 0.97684 0.96714 0.99755 1.18613 0.95685 0.92387 0.90071 1.21258 1.36321 1.00557 0.96318 0.92470 1.24958 0.95842 0.95329 0.97896 1.69845 1.47641 1.20364 1.15599 0.86555 0.79493 0.81701 0.80414 1.19701 1.21102 1.21099 1.22008 0.99661 0.96847 0.97728 1.21754 0.94290 0.82943 1.01567 0.89776 0.90491 0.90016 0.83516 0.83243 0.82532 0.92904 0.91449 0.87795 0.94237 0.95514 0.93134 0.91995 0.92060 0.92008 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.62 36.01 0.35 -0.79 16 2 C -0.06 -0.62 5.91 -104.22 -0.62 -1.24 16 3 C -0.07 -0.58 9.69 -39.64 -0.38 -0.96 16 4 C -0.11 -0.82 10.04 -39.49 -0.40 -1.22 16 5 C -0.06 -0.70 9.55 -39.64 -0.38 -1.07 16 6 C -0.01 -0.23 6.74 -79.55 -0.54 -0.76 16 7 N 0.02 0.41 4.45 34.16 0.15 0.57 16 8 O -0.16 -2.99 18.45 -29.46 -0.54 -3.54 16 9 O -0.12 -2.60 16.26 -33.38 -0.54 -3.15 16 10 C -0.05 -0.74 3.63 -104.97 -0.38 -1.12 16 11 C 0.56 10.27 3.00 -12.33 -0.04 10.24 16 12 O -0.53 -11.16 16.38 -3.99 -0.07 -11.23 16 13 N -0.58 -10.67 2.88 -174.17 -0.50 -11.17 16 14 C 0.10 1.94 6.31 -3.94 -0.02 1.91 16 15 C -0.12 -2.80 5.14 -26.84 -0.14 -2.93 16 16 C 0.05 1.22 2.07 -91.73 -0.19 1.03 16 17 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.12 -2.61 5.30 -26.63 -0.14 -2.75 16 26 C 0.12 2.14 6.43 -3.73 -0.02 2.11 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.88 7.08 -51.93 -0.37 0.51 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.16 1.47 7.61 -52.49 -0.40 1.07 16 33 H 0.05 0.91 6.23 -51.93 -0.32 0.58 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.10 2.62 6.03 -51.93 -0.31 2.31 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -32.46 349.08 -9.46 -41.91 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.53 Total: -0.76 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.29 Total: -10.02 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.28 Total: -34.71 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.15 Total: -17.91 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.46 -9.46 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397137884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.283 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds