Wall clock time and date at job start Tue Mar 31 2020 12:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37978 * 120.07303 * 2 1 4 4 C 1.38336 * 120.14093 * 180.02562 * 3 2 1 5 5 C 1.38387 * 120.29582 * 359.97438 * 4 3 2 6 6 C 1.37935 * 120.14051 * 0.27962 * 5 4 3 7 7 N 1.48016 * 120.07077 * 179.72623 * 6 5 4 8 8 O 1.21803 * 120.00000 * 359.97438 * 7 6 5 9 9 O 1.21794 * 119.99938 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.06942 * 179.97438 * 2 1 3 11 11 C 1.47837 * 120.14686 * 0.02562 * 10 2 1 12 12 O 1.21554 * 120.00696 * 89.99828 * 11 10 2 13 13 N 1.34776 * 119.99882 * 269.99917 * 11 10 2 14 14 C 1.46926 * 120.63223 * 359.71931 * 13 11 10 15 15 C 1.52754 * 109.00933 * 233.58544 * 14 13 11 16 16 C 1.53039 * 109.38416 * 305.58500 * 15 14 13 17 17 C 1.50701 * 109.44925 * 181.25291 * 16 15 14 18 18 H 1.07999 * 120.00228 * 239.93748 * 17 16 15 19 19 C 1.37876 * 120.00188 * 59.94094 * 17 16 15 20 20 N 1.31524 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00392 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46725 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46734 * 120.00072 * 21 19 17 24 24 H 1.48503 * 109.46999 * 240.00174 * 21 19 17 25 25 C 1.53039 * 109.53742 * 61.24334 * 16 15 14 26 26 C 1.46932 * 120.63047 * 180.02562 * 13 11 10 27 27 H 1.08996 * 109.47268 * 89.99132 * 1 2 3 28 28 H 1.08997 * 109.47005 * 210.00435 * 1 2 3 29 29 H 1.09004 * 109.46780 * 329.99354 * 1 2 3 30 30 H 1.07992 * 119.93165 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.85105 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.92594 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.58574 * 353.42119 * 14 13 11 34 34 H 1.09002 * 109.58528 * 113.84327 * 14 13 11 35 35 H 1.09006 * 109.56354 * 185.55232 * 15 14 13 36 36 H 1.09003 * 109.36242 * 65.50066 * 15 14 13 37 37 H 1.09000 * 109.46301 * 301.22003 * 16 15 14 38 38 H 0.97001 * 119.99844 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.50118 * 178.68668 * 25 16 15 40 40 H 1.09003 * 109.52633 * 58.60075 * 25 16 15 41 41 H 1.09001 * 109.58471 * 246.15338 * 26 13 11 42 42 H 1.08990 * 109.58630 * 6.43355 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2813 0.0016 -0.0005 6 6 3.6022 -1.1989 -0.0058 7 7 4.3520 -2.4751 -0.0119 8 8 5.5700 -2.4659 -0.0128 9 8 3.7510 -3.5345 -0.0161 10 6 2.2063 -1.2078 0.0005 11 6 1.4719 -2.4908 0.0005 12 8 1.1704 -3.0187 -1.0521 13 7 1.1368 -3.0754 1.1678 14 6 1.4996 -2.4529 2.4482 15 6 2.2556 -3.4709 3.2999 16 6 1.4162 -4.7434 3.4349 17 6 2.1471 -5.7372 4.3004 18 1 2.4162 -6.7046 3.9027 19 6 2.4722 -5.4116 5.6002 20 7 2.1440 -4.2338 6.0848 21 14 3.3776 -6.6438 6.6733 22 1 3.6287 -7.8850 5.8978 23 1 4.6727 -6.0626 7.1094 24 1 2.5517 -6.9628 7.8655 25 6 1.1801 -5.3502 2.0499 26 6 0.4075 -4.3509 1.1840 27 1 -0.3633 0.0002 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6586 2.1293 -0.0004 31 1 4.1183 2.1330 -0.0010 32 1 5.3613 0.0099 -0.0014 33 1 2.1357 -1.5866 2.2660 34 1 0.5959 -2.1414 2.9721 35 1 2.4430 -3.0521 4.2887 36 1 3.2045 -3.7102 2.8198 37 1 0.4575 -4.4992 3.8926 38 1 2.3730 -4.0046 6.9990 39 1 0.6020 -6.2690 2.1489 40 1 2.1388 -5.5722 1.5812 41 1 -0.5872 -4.1977 1.6025 42 1 0.3210 -4.7352 0.1677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397137884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:05 Heat of formation + Delta-G solvation = -34.103727 kcal Electronic energy + Delta-G solvation = -28119.752042 eV Core-core repulsion = 24260.094468 eV Total energy + Delta-G solvation = -3859.657574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.42115 -41.66510 -40.01862 -38.46648 -37.71473 -35.40922 -34.40522 -33.57718 -32.59435 -31.78307 -28.87048 -28.04057 -27.67822 -25.43858 -24.26403 -23.74572 -23.04319 -21.71604 -20.41258 -19.82549 -19.63250 -18.87111 -18.60953 -18.18615 -17.46102 -17.19590 -16.52823 -16.25465 -15.64579 -15.29029 -15.06543 -14.91073 -14.85458 -14.56168 -14.36617 -13.95379 -13.63814 -13.46327 -13.30494 -13.21854 -13.15577 -12.85482 -12.80365 -12.71169 -12.46447 -12.36734 -12.28893 -12.19771 -12.03145 -11.53885 -11.22401 -11.05307 -10.90099 -10.58400 -10.44001 -10.17351 -9.67084 -8.11439 -6.23344 -1.39710 -0.27471 0.19914 0.29364 1.31091 1.37706 1.40673 1.51573 1.87725 2.18689 2.42245 3.05892 3.15308 3.17633 3.59268 3.74182 3.87877 3.91222 3.96926 4.18547 4.26824 4.31054 4.36563 4.48708 4.52797 4.57615 4.63364 4.73377 4.79136 4.90078 4.93473 5.00301 5.06751 5.13433 5.15694 5.16725 5.35255 5.43746 5.46628 5.60289 5.94836 6.02912 6.29139 6.34528 6.37126 6.84591 6.91228 7.43949 8.92788 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.004570 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.177114 B = 6124.908437 C = 6454.172208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.046 4.046 4 C -0.082 4.082 5 C -0.062 4.062 6 C -0.046 4.046 7 N 0.025 4.975 8 O -0.146 6.146 9 O -0.211 6.211 10 C -0.085 4.085 11 C 0.567 3.433 12 O -0.572 6.572 13 N -0.584 5.584 14 C 0.121 3.879 15 C -0.109 4.109 16 C 0.051 3.949 17 C -0.533 4.533 18 H 0.044 0.956 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.275 1.275 25 C -0.114 4.114 26 C 0.121 3.879 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.201 0.799 31 H 0.203 0.797 32 H 0.172 0.828 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.084 0.916 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 19.436 -10.599 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C -0.064 4.064 4 C -0.100 4.100 5 C -0.081 4.081 6 C -0.130 4.130 7 N 0.539 4.461 8 O -0.369 6.369 9 O -0.413 6.413 10 C -0.089 4.089 11 C 0.355 3.645 12 O -0.453 6.453 13 N -0.315 5.315 14 C -0.001 4.001 15 C -0.147 4.147 16 C 0.032 3.968 17 C -0.571 4.571 18 H 0.062 0.938 19 C -0.180 4.180 20 N -0.552 5.552 21 Si 0.774 3.226 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.201 1.201 25 C -0.152 4.152 26 C -0.001 4.001 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.218 0.782 31 H 0.220 0.780 32 H 0.190 0.810 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.386 19.756 -10.957 22.717 hybrid contribution 1.128 -1.948 0.766 2.378 sum -1.258 17.808 -10.191 20.556 Atomic orbital electron populations 1.21020 0.87801 1.04815 1.04218 1.20399 0.98311 0.90005 0.97168 1.22093 0.94622 0.98446 0.91197 1.21962 0.94287 0.97972 0.95738 1.21507 1.03290 0.89019 0.94273 1.21451 0.90995 0.83935 1.16614 1.44068 1.01249 1.03817 0.96996 1.94421 0.96226 1.94431 1.51860 1.94680 1.70146 1.20289 1.56217 1.19819 0.91067 0.96150 1.01884 1.18162 0.78348 0.84232 0.83740 1.90727 1.57084 1.65509 1.31982 1.48063 1.55080 1.22810 1.05548 1.21723 0.99961 0.95372 0.83078 1.21649 0.96732 0.97318 0.99045 1.18561 0.94664 0.92640 0.90908 1.21558 1.37288 1.00858 0.97429 0.93757 1.25611 0.96479 0.96992 0.98909 1.69936 1.47978 1.21316 1.15938 0.85660 0.78487 0.79561 0.78895 1.19893 1.20743 1.20057 1.21839 0.98896 0.97953 0.96528 1.21651 0.94845 0.82780 1.00847 0.89287 0.93113 0.86160 0.78228 0.77990 0.81023 0.91186 0.89893 0.90052 0.97225 0.96901 0.92862 0.91296 0.94711 0.89767 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.62 71.24 0.69 -1.23 16 2 C -0.06 -1.09 5.91 -19.61 -0.12 -1.21 16 3 C -0.05 -0.43 9.69 22.23 0.22 -0.21 16 4 C -0.08 -0.74 10.04 22.33 0.22 -0.51 16 5 C -0.06 -1.16 9.55 22.23 0.21 -0.94 16 6 C -0.05 -1.40 6.74 36.63 0.25 -1.15 16 7 N 0.02 0.98 4.45 -45.85 -0.20 0.77 16 8 O -0.15 -5.49 18.45 18.88 0.35 -5.14 16 9 O -0.21 -9.87 16.26 22.64 0.37 -9.51 16 10 C -0.08 -2.54 3.63 -20.09 -0.07 -2.61 16 11 C 0.57 21.50 3.00 86.78 0.26 21.76 16 12 O -0.57 -25.25 16.38 5.01 0.08 -25.17 16 13 N -0.58 -22.35 2.88 -823.23 -2.37 -24.72 16 14 C 0.12 4.55 6.31 86.22 0.54 5.10 16 15 C -0.11 -5.22 5.14 30.53 0.16 -5.06 16 16 C 0.05 2.57 2.07 -11.51 -0.02 2.54 16 17 C -0.53 -30.17 8.56 25.60 0.22 -29.95 16 18 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 19 C 0.02 1.05 5.30 84.65 0.45 1.50 16 20 N -0.91 -51.27 11.31 21.45 0.24 -51.03 16 21 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 C -0.11 -5.11 5.30 30.66 0.16 -4.95 16 26 C 0.12 4.66 6.43 86.35 0.56 5.21 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.08 7.08 -2.39 -0.02 1.07 16 29 H 0.12 0.92 8.09 -2.38 -0.02 0.90 16 30 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 31 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 32 H 0.17 2.63 7.61 -2.91 -0.02 2.61 16 33 H 0.07 2.40 6.23 -2.39 -0.01 2.39 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.08 4.27 6.03 -2.38 -0.01 4.25 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.08 3.12 7.00 -2.39 -0.02 3.10 16 Total: -1.00 -79.01 349.08 5.25 -73.76 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.04 Total: 6.32 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 3.72 Total: -11.71 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.33 Total: -74.98 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: 0.80 Total: -39.81 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -79.01 5.25 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397137884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.657 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds