Wall clock time and date at job start Tue Mar 31 2020 13:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38377 * 119.85354 * 2 1 4 4 C 1.37932 * 120.14806 * 179.97438 * 3 2 1 5 5 C 1.39599 * 119.84924 * 0.02562 * 4 3 2 6 6 C 1.47848 * 120.14322 * 180.02562 * 5 4 3 7 7 O 1.21545 * 120.00322 * 221.46583 * 6 5 4 8 8 N 1.34777 * 119.99563 * 41.47177 * 6 5 4 9 9 C 1.46928 * 120.63388 * 355.67961 * 8 6 5 10 10 C 1.53617 * 108.54650 * 126.36872 * 9 8 6 11 11 C 1.53042 * 109.24606 * 54.85402 * 10 9 8 12 12 C 1.53038 * 109.53771 * 298.51512 * 11 10 9 13 13 H 1.09001 * 109.49829 * 301.41480 * 12 11 10 14 14 C 1.50699 * 109.52478 * 181.32951 * 12 11 10 15 15 H 1.08001 * 119.99951 * 0.14165 * 14 12 11 16 16 C 1.37881 * 119.99901 * 180.14439 * 14 12 11 17 17 N 1.31519 * 120.00121 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99744 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47173 * 60.00149 * 18 16 14 20 20 H 1.48506 * 109.46924 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47256 * 300.00104 * 18 16 14 22 22 C 1.46929 * 120.63004 * 175.95271 * 8 6 5 23 23 C 1.39553 * 119.71566 * 0.02562 * 5 4 3 24 24 C 1.37986 * 119.85010 * 0.27231 * 23 5 4 25 25 N 1.48013 * 119.92955 * 179.73005 * 24 23 5 26 26 O 1.21801 * 120.00033 * 6.41232 * 25 24 23 27 27 O 1.21801 * 119.99957 * 186.42079 * 25 24 23 28 28 H 1.08994 * 109.47073 * 96.86305 * 1 2 3 29 29 H 1.09000 * 109.47403 * 216.86094 * 1 2 3 30 30 H 1.08995 * 109.46986 * 336.85875 * 1 2 3 31 31 H 1.08006 * 119.92670 * 0.02562 * 3 2 1 32 32 H 1.07993 * 120.07934 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.58528 * 246.20249 * 9 8 6 34 34 H 1.08997 * 109.58183 * 6.62254 * 9 8 6 35 35 H 1.09006 * 109.63392 * 294.86345 * 10 9 8 36 36 H 1.08998 * 109.43397 * 174.72973 * 10 9 8 37 37 H 1.08994 * 109.46032 * 178.49332 * 11 10 9 38 38 H 1.08998 * 109.44422 * 58.52384 * 11 10 9 39 39 H 0.97002 * 119.99982 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.58694 * 353.37918 * 22 8 6 41 41 H 1.09002 * 109.58074 * 113.79658 * 22 8 6 42 42 H 1.07996 * 120.07961 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0000 0.0017 7 8 6.3630 -0.7884 -0.6952 8 7 6.4279 0.8743 0.7756 9 6 5.7098 1.8951 1.5509 10 6 6.1450 1.7886 3.0203 11 6 7.6696 1.8936 3.1037 12 6 8.3054 0.7376 2.3283 13 1 7.9635 -0.2105 2.7434 14 6 9.8060 0.8227 2.4378 15 1 10.2616 1.6203 3.0059 16 6 10.5973 -0.1176 1.8128 17 7 10.0426 -1.0886 1.1205 18 14 12.4574 -0.0116 1.9480 19 1 12.8557 -0.0995 3.3759 20 1 13.0732 -1.1323 1.1929 21 1 12.9219 1.2808 1.3832 22 6 7.8943 0.8286 0.8554 23 6 3.5755 -1.2068 -0.0006 24 6 2.1956 -1.1998 -0.0073 25 7 1.4507 -2.4788 -0.0145 26 8 2.0494 -3.5330 0.1033 27 8 0.2390 -2.4771 -0.1384 28 1 -0.3633 -0.1228 -1.0202 29 1 -0.3634 -0.8222 0.6165 30 1 -0.3633 0.9449 0.4039 31 1 1.6523 2.1334 0.0004 32 1 4.1116 2.1445 0.0010 33 1 5.9535 2.8851 1.1656 34 1 4.6360 1.7246 1.4731 35 1 5.8235 0.8305 3.4290 36 1 5.6926 2.5987 3.5922 37 1 7.9803 1.8453 4.1473 38 1 7.9921 2.8411 2.6722 39 1 10.5993 -1.7503 0.6811 40 1 8.2624 -0.0458 0.3185 41 1 8.3125 1.7334 0.4145 42 1 4.1119 -2.1442 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397579553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:00 Heat of formation + Delta-G solvation = -23.391614 kcal Electronic energy + Delta-G solvation = -26867.957181 eV Core-core repulsion = 23008.764119 eV Total energy + Delta-G solvation = -3859.193062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.44306 -41.77149 -39.98114 -38.44197 -37.83600 -35.56706 -34.31302 -33.44962 -33.06176 -31.54276 -29.24516 -27.81544 -26.84087 -26.18880 -24.00211 -23.59437 -23.34898 -21.91583 -20.65173 -19.86113 -19.62595 -18.78611 -18.47419 -17.70853 -17.37125 -16.95920 -16.66420 -16.50140 -15.83076 -15.43898 -15.21093 -14.88298 -14.84150 -14.55604 -14.33980 -13.94878 -13.73598 -13.63775 -13.39822 -13.33061 -13.00679 -12.87128 -12.67280 -12.55630 -12.34954 -12.30912 -12.25704 -11.88486 -11.75686 -11.67302 -11.29274 -11.00550 -10.91411 -10.58409 -10.50969 -10.23421 -9.53039 -8.14636 -6.32063 -1.31512 -0.49144 0.17168 0.25828 1.39510 1.40145 1.48668 1.49375 1.91882 2.25610 2.39641 3.09740 3.16124 3.22780 3.47035 3.59607 3.67550 3.92747 3.99978 4.12167 4.27967 4.32204 4.47204 4.54106 4.59806 4.69432 4.73310 4.74163 4.81794 4.82710 5.00155 5.03101 5.06442 5.14846 5.20802 5.23165 5.31713 5.46874 5.48525 5.57383 5.85575 5.95347 6.27973 6.45272 6.47388 6.81037 7.07777 7.38988 8.88498 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.003338 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.122707 B = 8387.043134 C = 9163.320948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.010 3.990 3 C -0.099 4.099 4 C -0.027 4.027 5 C -0.135 4.135 6 C 0.539 3.461 7 O -0.587 6.587 8 N -0.595 5.595 9 C 0.082 3.918 10 C -0.129 4.129 11 C -0.106 4.106 12 C 0.037 3.963 13 H -0.018 1.018 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.009 3.991 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.125 3.875 23 C -0.023 4.023 24 C -0.068 4.068 25 N 0.033 4.967 26 O -0.243 6.243 27 O -0.112 6.112 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.213 0.787 32 H 0.188 0.812 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.259 0.741 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.765 13.036 -0.336 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 C -0.117 4.117 4 C -0.045 4.045 5 C -0.139 4.139 6 C 0.328 3.672 7 O -0.469 6.469 8 N -0.325 5.325 9 C -0.039 4.039 10 C -0.167 4.167 11 C -0.143 4.143 12 C 0.018 3.982 13 H 0.000 1.000 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.190 4.190 17 N -0.556 5.556 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.189 1.189 22 C 0.003 3.997 23 C -0.044 4.044 24 C -0.152 4.152 25 N 0.547 4.453 26 O -0.438 6.438 27 O -0.342 6.342 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.230 0.770 32 H 0.205 0.795 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.880 12.983 -0.756 24.598 hybrid contribution 1.772 -1.711 -0.096 2.465 sum -19.108 11.272 -0.851 22.201 Atomic orbital electron populations 1.21479 0.85939 1.06384 1.05254 1.20588 0.99762 0.89432 0.89416 1.21706 0.92495 0.98453 0.99006 1.22354 0.95555 0.97388 0.89205 1.19715 0.92257 0.94478 1.07461 1.18715 0.87608 0.80699 0.80207 1.90805 1.70711 1.41568 1.43788 1.48451 1.08338 1.32202 1.43547 1.22818 0.98032 0.91669 0.91356 1.22016 0.95919 1.02510 0.96216 1.21524 0.94922 0.98374 0.99518 1.18919 0.94466 0.93607 0.91220 1.00029 1.21505 0.92105 1.11701 1.32117 0.91687 1.25913 1.03497 0.94834 0.94775 1.70078 1.36801 1.15057 1.33673 0.85614 0.79963 0.77772 0.78364 1.19368 1.21743 1.18884 1.21803 0.76008 1.01357 1.00541 1.20768 0.91773 0.99570 0.92246 1.20910 0.91403 0.83761 1.19148 1.43761 1.01082 1.03205 0.97281 1.94627 1.70746 1.20579 1.57821 1.94380 0.96433 1.93816 1.49544 0.88056 0.89678 0.86469 0.77047 0.79535 0.87916 0.86347 0.93825 0.87082 0.93114 0.91701 0.93179 0.90797 0.93411 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.65 71.24 0.62 -0.57 16 2 C 0.01 0.14 5.89 -19.81 -0.12 0.03 16 3 C -0.10 -0.86 9.65 22.23 0.21 -0.65 16 4 C -0.03 -0.40 7.34 22.53 0.17 -0.24 16 5 C -0.14 -3.78 5.33 -20.09 -0.11 -3.88 16 6 C 0.54 21.40 7.35 86.79 0.64 22.04 16 7 O -0.59 -30.43 16.37 -3.86 -0.06 -30.50 16 8 N -0.60 -22.14 2.97 -821.48 -2.44 -24.57 16 9 C 0.08 1.90 5.13 86.51 0.44 2.35 16 10 C -0.13 -3.36 6.10 30.82 0.19 -3.17 16 11 C -0.11 -3.78 5.11 30.62 0.16 -3.63 16 12 C 0.04 1.82 2.25 -11.46 -0.03 1.79 16 13 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 14 C -0.54 -28.92 8.57 25.60 0.22 -28.70 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.01 0.51 5.30 84.65 0.45 0.96 16 17 N -0.92 -55.98 11.39 21.45 0.24 -55.74 16 18 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 C 0.12 5.99 5.39 86.36 0.47 6.45 16 23 C -0.02 -0.71 9.16 22.53 0.21 -0.50 16 24 C -0.07 -1.71 6.82 36.34 0.25 -1.46 16 25 N 0.03 0.97 4.45 -46.55 -0.21 0.76 16 26 O -0.24 -8.61 18.46 18.89 0.35 -8.27 16 27 O -0.11 -2.82 15.35 18.88 0.29 -2.53 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.07 5.89 -2.39 -0.01 1.05 16 30 H 0.12 0.16 8.03 -2.39 -0.02 0.14 16 31 H 0.21 -0.45 8.05 -2.91 -0.02 -0.47 16 32 H 0.19 1.67 6.12 -2.91 -0.02 1.65 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 1.88 3.92 -2.39 -0.01 1.87 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.07 4.36 5.14 -2.38 -0.01 4.35 16 41 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.12 4.60 7.62 -2.91 -0.02 4.58 16 Total: -1.00 -81.95 343.82 5.02 -76.94 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.05 Total: 7.11 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.76 Total: -9.18 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.40 Total: -79.55 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: 0.58 Total: -41.30 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -81.95 5.02 -76.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.544 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds