Wall clock time and date at job start Tue Mar 31 2020 13:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38380 * 119.85693 * 2 1 4 4 C 1.37939 * 120.14852 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.85040 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.14142 * 180.02562 * 5 4 3 7 7 O 1.21557 * 120.00206 * 146.83660 * 6 5 4 8 8 N 1.34778 * 119.99858 * 326.83124 * 6 5 4 9 9 C 1.46923 * 120.63453 * 354.61073 * 8 6 5 10 10 C 1.53194 * 108.77506 * 233.58749 * 9 8 6 11 11 C 1.53048 * 109.30894 * 305.36065 * 10 9 8 12 12 C 1.53033 * 109.53755 * 61.36532 * 11 10 9 13 13 H 1.08997 * 109.50066 * 58.62223 * 12 11 10 14 14 C 1.50704 * 109.49580 * 178.68486 * 12 11 10 15 15 H 1.07996 * 120.00223 * 5.39386 * 14 12 11 16 16 C 1.37884 * 119.99977 * 185.39788 * 14 12 11 17 17 N 1.31514 * 119.99924 * 5.48893 * 16 14 12 18 18 Si 1.86793 * 119.99931 * 185.48438 * 16 14 12 19 19 H 1.48506 * 109.47146 * 94.99907 * 18 16 14 20 20 H 1.48498 * 109.47193 * 214.99707 * 18 16 14 21 21 H 1.48500 * 109.47334 * 335.00022 * 18 16 14 22 22 C 1.46931 * 120.62913 * 174.32635 * 8 6 5 23 23 C 1.39554 * 119.71143 * 359.74594 * 5 4 3 24 24 C 1.37979 * 119.85592 * 0.48405 * 23 5 4 25 25 N 1.48012 * 119.93117 * 179.78890 * 24 23 5 26 26 O 1.21799 * 120.00037 * 142.05721 * 25 24 23 27 27 O 1.21801 * 119.99832 * 321.78313 * 25 24 23 28 28 H 1.09001 * 109.46689 * 273.35417 * 1 2 3 29 29 H 1.08994 * 109.47047 * 33.35545 * 1 2 3 30 30 H 1.09003 * 109.47038 * 153.35774 * 1 2 3 31 31 H 1.08004 * 119.92500 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.07088 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.58369 * 353.36660 * 9 8 6 34 34 H 1.08994 * 109.59257 * 113.65316 * 9 8 6 35 35 H 1.08992 * 109.49882 * 65.31210 * 10 9 8 36 36 H 1.09002 * 109.49539 * 185.41108 * 10 9 8 37 37 H 1.09001 * 109.45673 * 181.39178 * 11 10 9 38 38 H 1.09008 * 109.45592 * 301.35928 * 11 10 9 39 39 H 0.96999 * 120.00360 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.58691 * 246.20902 * 22 8 6 41 41 H 1.09003 * 109.58381 * 6.62688 * 22 8 6 42 42 H 1.08000 * 120.07588 * 180.27265 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2072 -0.0005 5 6 4.2763 0.0000 -0.0016 6 6 5.7547 0.0000 -0.0016 7 8 6.3625 -0.8818 0.5734 8 7 6.4286 0.9776 -0.6393 9 6 5.7129 1.9828 -1.4368 10 6 6.3163 2.0163 -2.8445 11 6 7.8250 2.2524 -2.7429 12 6 8.4719 1.1026 -1.9673 13 1 8.2655 0.1602 -2.4744 14 6 9.9615 1.3196 -1.8957 15 1 10.3935 2.2317 -2.2800 16 6 10.7729 0.3535 -1.3395 17 7 10.2626 -0.8010 -0.9702 18 14 12.5970 0.6843 -1.1106 19 1 12.8412 1.1791 0.2682 20 1 13.3590 -0.5716 -1.3280 21 1 13.0411 1.7086 -2.0899 22 6 7.8924 1.0620 -0.5452 23 6 3.5754 -1.2068 0.0032 24 6 2.1956 -1.1999 -0.0011 25 7 1.4507 -2.4788 -0.0007 26 8 0.4233 -2.5850 0.6449 27 8 1.8623 -3.4235 -0.6500 28 1 -0.3633 0.0601 1.0259 29 1 -0.3633 0.8583 -0.5650 30 1 -0.3633 -0.9186 -0.4608 31 1 1.6523 2.1334 0.0004 32 1 4.1117 2.1445 -0.0001 33 1 4.6575 1.7169 -1.4980 34 1 5.8165 2.9618 -0.9692 35 1 6.1297 1.0652 -3.3431 36 1 5.8594 2.8235 -3.4171 37 1 8.2531 2.3013 -3.7442 38 1 8.0113 3.1917 -2.2221 39 1 10.8335 -1.4809 -0.5793 40 1 8.1723 1.9679 -0.0075 41 1 8.2756 0.1885 -0.0177 42 1 4.1118 -2.1442 0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397579555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:05 Heat of formation + Delta-G solvation = -7.350201 kcal Electronic energy + Delta-G solvation = -26789.605513 eV Core-core repulsion = 22931.108058 eV Total energy + Delta-G solvation = -3858.497454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40082 -40.59183 -38.83270 -36.92433 -36.68280 -34.04821 -33.08239 -32.29699 -31.81293 -29.99324 -28.36986 -26.60397 -25.19534 -24.87410 -23.03069 -22.47527 -21.94476 -20.59124 -19.31668 -18.82278 -18.42181 -17.78684 -16.72147 -16.37517 -16.14451 -15.79049 -15.26100 -14.83100 -14.53347 -14.41225 -14.16737 -13.93085 -13.51040 -13.09829 -12.88999 -12.76586 -12.65718 -12.56692 -12.22072 -12.13971 -11.93439 -11.67305 -11.26222 -11.11312 -11.03861 -11.00196 -10.67978 -10.53735 -10.36783 -10.04704 -9.79500 -9.69131 -9.33729 -9.18378 -9.06079 -8.52024 -7.99440 -6.08645 -4.15837 -0.22864 0.42322 0.95708 1.21621 2.58902 3.19766 3.27639 3.34578 3.36214 3.45679 4.00878 4.04848 4.33883 4.37401 4.45632 4.57137 4.77752 4.95556 5.07746 5.10569 5.21385 5.22591 5.29192 5.36398 5.46897 5.54385 5.63398 5.69540 5.77512 5.89336 6.00436 6.16202 6.27429 6.44276 6.48871 6.69033 6.82686 6.92783 6.99721 7.47962 7.49608 7.73718 7.85252 7.94872 8.26890 8.50895 8.89030 9.49975 10.98621 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.003256 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.888779 B = 8596.196354 C = 9367.184086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.011 4.011 3 C -0.126 4.126 4 C -0.046 4.046 5 C -0.117 4.117 6 C 0.547 3.453 7 O -0.522 6.522 8 N -0.594 5.594 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.111 4.111 12 C 0.039 3.961 13 H 0.037 0.963 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.878 5.878 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.116 3.884 23 C -0.006 4.006 24 C -0.048 4.048 25 N 0.027 4.973 26 O -0.152 6.152 27 O -0.152 6.152 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.983 7.381 0.795 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.121 4.121 6 C 0.332 3.668 7 O -0.398 6.398 8 N -0.326 5.326 9 C -0.031 4.031 10 C -0.173 4.173 11 C -0.149 4.149 12 C 0.020 3.980 13 H 0.055 0.945 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.515 5.515 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.004 4.004 23 C -0.025 4.025 24 C -0.130 4.130 25 N 0.549 4.451 26 O -0.369 6.369 27 O -0.370 6.370 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.196 7.357 1.184 19.663 hybrid contribution 0.882 -0.203 0.111 0.912 sum -17.314 7.154 1.295 18.779 Atomic orbital electron populations 1.21106 0.88713 1.04177 1.04521 1.19904 0.97771 0.90436 0.93128 1.21045 0.93757 0.97188 1.02447 1.22087 0.94349 0.98675 0.91344 1.20162 0.95391 0.92571 1.03993 1.17973 0.85451 0.82732 0.80610 1.90853 1.68832 1.35457 1.44700 1.48420 1.09873 1.27119 1.47173 1.22231 0.96105 0.92013 0.92768 1.21970 0.98591 1.01590 0.95156 1.21640 0.92161 1.00252 1.00800 1.19051 0.94499 0.94063 0.90363 0.94527 1.21044 0.90779 1.03660 1.40784 0.92299 1.25059 0.98693 0.94809 0.95348 1.69952 1.35895 1.04774 1.40837 0.86601 0.85272 0.77799 0.78493 1.20635 1.21175 1.19854 1.22435 0.73083 1.02843 1.02001 1.20967 0.90282 1.00470 0.90815 1.20733 0.92113 0.83475 1.16696 1.43532 1.00509 1.02464 0.98611 1.94503 1.12696 1.89186 1.40546 1.94597 1.71593 1.30472 1.40304 0.88662 0.90033 0.90524 0.83021 0.82590 0.90165 0.91349 0.91947 0.91941 0.92717 0.93142 0.92607 0.93243 0.87150 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.94 36.01 0.32 -0.61 16 2 C -0.01 -0.10 5.88 -104.53 -0.61 -0.72 16 3 C -0.13 -0.97 9.69 -39.64 -0.38 -1.36 16 4 C -0.05 -0.45 7.37 -39.18 -0.29 -0.74 16 5 C -0.12 -1.63 5.37 -104.97 -0.56 -2.20 16 6 C 0.55 10.18 7.41 -12.33 -0.09 10.09 16 7 O -0.52 -12.16 16.20 5.32 0.09 -12.07 16 8 N -0.59 -10.74 2.97 -173.61 -0.51 -11.26 16 9 C 0.09 1.21 4.75 -3.71 -0.02 1.20 16 10 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.17 16 12 C 0.04 0.92 2.13 -91.43 -0.19 0.73 16 13 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 14 C -0.52 -13.67 8.49 -34.44 -0.29 -13.96 16 15 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 16 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 17 N -0.88 -25.15 12.04 55.43 0.67 -24.49 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 C 0.12 2.60 5.52 -3.49 -0.02 2.58 16 23 C -0.01 -0.08 9.22 -39.19 -0.36 -0.44 16 24 C -0.05 -0.61 6.46 -80.01 -0.52 -1.12 16 25 N 0.03 0.38 4.10 33.93 0.14 0.51 16 26 O -0.15 -2.06 16.58 -29.46 -0.49 -2.55 16 27 O -0.15 -2.35 18.96 -29.46 -0.56 -2.91 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.08 0.66 6.29 -51.93 -0.33 0.34 16 31 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 32 H 0.16 1.24 5.78 -52.49 -0.30 0.93 16 33 H 0.08 0.85 4.29 -51.93 -0.22 0.63 16 34 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 2.95 5.77 -51.93 -0.30 2.65 16 42 H 0.16 2.41 7.93 -52.49 -0.42 1.99 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -31.62 346.69 -9.21 -40.83 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.33 Total: 0.14 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.42 Total: -9.20 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.29 Total: -35.23 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.96 Total: -17.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.62 -9.21 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.485 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds