Wall clock time and date at job start Tue Mar 31 2020 13:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38380 * 119.85693 * 2 1 4 4 C 1.37939 * 120.14852 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.85040 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.14142 * 180.02562 * 5 4 3 7 7 O 1.21557 * 120.00206 * 146.83660 * 6 5 4 8 8 N 1.34778 * 119.99858 * 326.83124 * 6 5 4 9 9 C 1.46923 * 120.63453 * 354.61073 * 8 6 5 10 10 C 1.53194 * 108.77506 * 233.58749 * 9 8 6 11 11 C 1.53048 * 109.30894 * 305.36065 * 10 9 8 12 12 C 1.53033 * 109.53755 * 61.36532 * 11 10 9 13 13 H 1.08997 * 109.50066 * 58.62223 * 12 11 10 14 14 C 1.50704 * 109.49580 * 178.68486 * 12 11 10 15 15 H 1.07996 * 120.00223 * 5.39386 * 14 12 11 16 16 C 1.37884 * 119.99977 * 185.39788 * 14 12 11 17 17 N 1.31514 * 119.99924 * 5.48893 * 16 14 12 18 18 Si 1.86793 * 119.99931 * 185.48438 * 16 14 12 19 19 H 1.48506 * 109.47146 * 94.99907 * 18 16 14 20 20 H 1.48498 * 109.47193 * 214.99707 * 18 16 14 21 21 H 1.48500 * 109.47334 * 335.00022 * 18 16 14 22 22 C 1.46931 * 120.62913 * 174.32635 * 8 6 5 23 23 C 1.39554 * 119.71143 * 359.74594 * 5 4 3 24 24 C 1.37979 * 119.85592 * 0.48405 * 23 5 4 25 25 N 1.48012 * 119.93117 * 179.78890 * 24 23 5 26 26 O 1.21799 * 120.00037 * 142.05721 * 25 24 23 27 27 O 1.21801 * 119.99832 * 321.78313 * 25 24 23 28 28 H 1.09001 * 109.46689 * 273.35417 * 1 2 3 29 29 H 1.08994 * 109.47047 * 33.35545 * 1 2 3 30 30 H 1.09003 * 109.47038 * 153.35774 * 1 2 3 31 31 H 1.08004 * 119.92500 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.07088 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.58369 * 353.36660 * 9 8 6 34 34 H 1.08994 * 109.59257 * 113.65316 * 9 8 6 35 35 H 1.08992 * 109.49882 * 65.31210 * 10 9 8 36 36 H 1.09002 * 109.49539 * 185.41108 * 10 9 8 37 37 H 1.09001 * 109.45673 * 181.39178 * 11 10 9 38 38 H 1.09008 * 109.45592 * 301.35928 * 11 10 9 39 39 H 0.96999 * 120.00360 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.58691 * 246.20902 * 22 8 6 41 41 H 1.09003 * 109.58381 * 6.62688 * 22 8 6 42 42 H 1.08000 * 120.07588 * 180.27265 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5753 1.2072 -0.0005 5 6 4.2763 0.0000 -0.0016 6 6 5.7547 0.0000 -0.0016 7 8 6.3625 -0.8818 0.5734 8 7 6.4286 0.9776 -0.6393 9 6 5.7129 1.9828 -1.4368 10 6 6.3163 2.0163 -2.8445 11 6 7.8250 2.2524 -2.7429 12 6 8.4719 1.1026 -1.9673 13 1 8.2655 0.1602 -2.4744 14 6 9.9615 1.3196 -1.8957 15 1 10.3935 2.2317 -2.2800 16 6 10.7729 0.3535 -1.3395 17 7 10.2626 -0.8010 -0.9702 18 14 12.5970 0.6843 -1.1106 19 1 12.8412 1.1791 0.2682 20 1 13.3590 -0.5716 -1.3280 21 1 13.0411 1.7086 -2.0899 22 6 7.8924 1.0620 -0.5452 23 6 3.5754 -1.2068 0.0032 24 6 2.1956 -1.1999 -0.0011 25 7 1.4507 -2.4788 -0.0007 26 8 0.4233 -2.5850 0.6449 27 8 1.8623 -3.4235 -0.6500 28 1 -0.3633 0.0601 1.0259 29 1 -0.3633 0.8583 -0.5650 30 1 -0.3633 -0.9186 -0.4608 31 1 1.6523 2.1334 0.0004 32 1 4.1117 2.1445 -0.0001 33 1 4.6575 1.7169 -1.4980 34 1 5.8165 2.9618 -0.9692 35 1 6.1297 1.0652 -3.3431 36 1 5.8594 2.8235 -3.4171 37 1 8.2531 2.3013 -3.7442 38 1 8.0113 3.1917 -2.2221 39 1 10.8335 -1.4809 -0.5793 40 1 8.1723 1.9679 -0.0075 41 1 8.2756 0.1885 -0.0177 42 1 4.1118 -2.1442 0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397579555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:05 Heat of formation + Delta-G solvation = -26.305590 kcal Electronic energy + Delta-G solvation = -26790.427480 eV Core-core repulsion = 22931.108058 eV Total energy + Delta-G solvation = -3859.319422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46473 -41.79596 -39.99416 -38.44470 -37.79752 -35.57124 -34.36941 -33.49139 -33.05612 -31.60378 -29.24620 -27.84564 -26.84651 -26.23036 -24.03639 -23.58442 -23.31041 -21.89649 -20.70577 -19.92106 -19.70232 -18.84286 -18.47882 -17.69938 -17.36021 -16.87296 -16.59484 -16.52780 -15.86156 -15.43215 -15.20592 -14.95599 -14.83940 -14.57422 -14.34536 -14.00743 -13.69480 -13.55407 -13.38272 -13.32240 -13.03155 -12.89609 -12.76977 -12.69179 -12.37885 -12.33335 -12.24021 -12.06461 -11.87302 -11.66239 -11.32026 -10.96596 -10.89888 -10.57832 -10.53424 -10.25552 -9.53719 -8.16519 -6.30852 -1.21697 -0.53844 -0.01414 0.21742 1.38264 1.39633 1.47763 1.50442 1.91649 2.25922 2.39826 3.09091 3.15260 3.21101 3.45226 3.59394 3.67603 3.89033 3.99758 4.13623 4.24684 4.27334 4.43700 4.53065 4.56866 4.66302 4.70936 4.73561 4.79877 4.82412 4.92788 5.01510 5.05092 5.05893 5.17169 5.23977 5.29175 5.38546 5.48187 5.58270 5.85551 5.91156 6.28540 6.36878 6.44522 6.83928 7.06439 7.39588 8.89691 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.003256 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.888779 B = 8596.196354 C = 9367.184086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.003 3.997 3 C -0.095 4.095 4 C -0.031 4.031 5 C -0.133 4.133 6 C 0.539 3.461 7 O -0.590 6.590 8 N -0.595 5.595 9 C 0.085 3.915 10 C -0.130 4.130 11 C -0.105 4.105 12 C 0.036 3.964 13 H -0.016 1.016 14 C -0.533 4.533 15 H 0.065 0.935 16 C 0.009 3.991 17 N -0.919 5.919 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.259 1.259 22 C 0.130 3.870 23 C -0.026 4.026 24 C -0.063 4.063 25 N 0.027 4.973 26 O -0.116 6.116 27 O -0.219 6.219 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.213 0.787 32 H 0.188 0.812 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.258 0.742 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.328 12.553 0.583 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.001 3.999 3 C -0.113 4.113 4 C -0.048 4.048 5 C -0.137 4.137 6 C 0.327 3.673 7 O -0.471 6.471 8 N -0.325 5.325 9 C -0.036 4.036 10 C -0.168 4.168 11 C -0.143 4.143 12 C 0.017 3.983 13 H 0.003 0.997 14 C -0.572 4.572 15 H 0.084 0.916 16 C -0.190 4.190 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.183 1.183 22 C 0.008 3.992 23 C -0.046 4.046 24 C -0.145 4.145 25 N 0.546 4.454 26 O -0.346 6.346 27 O -0.420 6.420 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.205 0.795 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.478 12.507 0.845 24.869 hybrid contribution 1.764 -1.728 0.224 2.479 sum -19.714 10.780 1.069 22.494 Atomic orbital electron populations 1.21271 0.86367 1.05055 1.05964 1.20474 0.99393 0.89477 0.90523 1.21664 0.92564 0.98337 0.98688 1.22417 0.95478 0.97541 0.89412 1.19690 0.92136 0.94398 1.07523 1.18736 0.87644 0.81538 0.79339 1.90809 1.70800 1.37983 1.47548 1.48401 1.08347 1.28228 1.47556 1.22725 0.97238 0.92278 0.91333 1.21959 0.95818 1.02384 0.96619 1.21526 0.94832 0.98350 0.99579 1.18992 0.94095 0.93898 0.91329 0.99744 1.21528 0.92577 1.03437 1.39633 0.91641 1.25912 1.03207 0.94577 0.95339 1.70150 1.37256 1.05909 1.42413 0.85580 0.79990 0.77590 0.78765 1.20104 1.21694 1.18297 1.21814 0.76225 1.00637 1.00571 1.20703 0.91317 0.99621 0.92957 1.20844 0.91416 0.83666 1.18599 1.43784 1.00473 1.02947 0.98166 1.94445 1.12349 1.89066 1.38748 1.94617 1.72764 1.31839 1.42824 0.87013 0.86112 0.92363 0.77064 0.79493 0.86605 0.87442 0.94058 0.86961 0.93263 0.91420 0.93277 0.92377 0.92529 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.94 71.24 0.64 -0.53 16 2 C 0.00 0.04 5.88 -19.81 -0.12 -0.07 16 3 C -0.09 -0.81 9.69 22.23 0.22 -0.59 16 4 C -0.03 -0.45 7.37 22.53 0.17 -0.28 16 5 C -0.13 -3.67 5.37 -20.09 -0.11 -3.78 16 6 C 0.54 21.13 7.41 86.79 0.64 21.77 16 7 O -0.59 -30.47 16.20 -3.89 -0.06 -30.53 16 8 N -0.60 -21.65 2.97 -821.47 -2.44 -24.09 16 9 C 0.08 1.91 4.75 86.36 0.41 2.32 16 10 C -0.13 -3.36 6.08 30.68 0.19 -3.17 16 11 C -0.11 -3.72 5.11 30.62 0.16 -3.57 16 12 C 0.04 1.76 2.13 -11.32 -0.02 1.74 16 13 H -0.02 -0.92 8.12 -2.39 -0.02 -0.94 16 14 C -0.53 -28.65 8.49 25.60 0.22 -28.43 16 15 H 0.07 3.35 7.75 -2.91 -0.02 3.32 16 16 C 0.01 0.51 5.29 84.66 0.45 0.96 16 17 N -0.92 -56.49 12.04 21.45 0.26 -56.23 16 18 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C 0.13 6.07 5.52 86.51 0.48 6.55 16 23 C -0.03 -0.77 9.22 22.53 0.21 -0.56 16 24 C -0.06 -1.55 6.46 36.34 0.23 -1.31 16 25 N 0.03 0.78 4.10 -46.55 -0.19 0.59 16 26 O -0.12 -3.03 16.58 18.89 0.31 -2.72 16 27 O -0.22 -7.42 18.96 18.89 0.36 -7.07 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.23 8.10 -2.39 -0.02 0.21 16 30 H 0.06 0.79 6.29 -2.39 -0.02 0.78 16 31 H 0.21 -0.48 8.06 -2.91 -0.02 -0.50 16 32 H 0.19 1.65 5.78 -2.91 -0.02 1.63 16 33 H 0.12 1.82 4.29 -2.38 -0.01 1.81 16 34 H 0.11 1.71 8.03 -2.39 -0.02 1.69 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 3.29 5.77 -2.39 -0.01 3.27 16 42 H 0.12 4.39 7.93 -2.91 -0.02 4.36 16 Total: -1.00 -82.51 346.69 5.07 -77.45 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.05 Total: 5.60 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.75 Total: -8.97 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.37 Total: -79.73 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: 0.61 Total: -40.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -82.51 5.07 -77.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -82.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds