Wall clock time and date at job start Tue Mar 31 2020 12:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37989 * 120.07722 * 2 1 4 4 C 1.38337 * 120.14594 * 180.25546 * 3 2 1 5 5 C 1.38381 * 120.28973 * 359.76591 * 4 3 2 6 6 N 1.48022 * 119.92168 * 179.97438 * 5 4 3 7 7 O 1.21801 * 119.99652 * 179.97438 * 6 5 4 8 8 O 1.21795 * 120.00133 * 359.97438 * 6 5 4 9 9 C 1.37932 * 120.14909 * 359.95276 * 5 4 3 10 10 C 1.39552 * 120.07553 * 179.72003 * 2 1 3 11 11 C 1.47850 * 120.14355 * 359.97438 * 10 2 1 12 12 O 1.21558 * 119.99633 * 305.68566 * 11 10 2 13 13 N 1.34779 * 120.00168 * 125.95912 * 11 10 2 14 14 C 1.46926 * 120.62850 * 3.70688 * 13 11 10 15 15 C 1.53195 * 108.76971 * 233.58386 * 14 13 11 16 16 C 1.53033 * 109.31429 * 305.36329 * 15 14 13 17 17 C 1.53040 * 109.53934 * 61.36546 * 16 15 14 18 18 H 1.09005 * 109.49065 * 58.62217 * 17 16 15 19 19 C 1.50701 * 109.49884 * 178.68071 * 17 16 15 20 20 H 1.07994 * 120.00140 * 0.02562 * 19 17 16 21 21 C 1.37881 * 119.99697 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99972 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99520 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47052 * 90.00484 * 23 21 19 25 25 H 1.48506 * 109.46865 * 209.99957 * 23 21 19 26 26 H 1.48498 * 109.47386 * 330.00188 * 23 21 19 27 27 C 1.46922 * 120.62770 * 183.42057 * 13 11 10 28 28 H 1.09004 * 109.47247 * 264.90829 * 1 2 3 29 29 H 1.09001 * 109.47035 * 24.90342 * 1 2 3 30 30 H 1.09000 * 109.47170 * 144.90814 * 1 2 3 31 31 H 1.07999 * 119.92499 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.85045 * 179.74070 * 4 3 2 33 33 H 1.08002 * 120.07594 * 180.02562 * 9 5 4 34 34 H 1.08995 * 109.58726 * 353.36985 * 14 13 11 35 35 H 1.09002 * 109.58959 * 113.65403 * 14 13 11 36 36 H 1.08997 * 109.49975 * 65.31806 * 15 14 13 37 37 H 1.09010 * 109.49551 * 185.41412 * 15 14 13 38 38 H 1.08997 * 109.46282 * 181.39120 * 16 15 14 39 39 H 1.09009 * 109.45864 * 301.34720 * 16 15 14 40 40 H 0.97008 * 119.99575 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.59006 * 246.19903 * 27 13 11 42 42 H 1.08995 * 109.59171 * 6.63438 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2812 0.0017 -0.0058 6 7 5.7614 0.0130 -0.0121 7 8 6.3784 -1.0372 -0.0121 8 8 6.3623 1.0723 -0.0173 9 6 3.6022 -1.1989 0.0000 10 6 2.2063 -1.2076 0.0059 11 6 1.4719 -2.4908 0.0127 12 8 0.6374 -2.7089 0.8693 13 7 1.7317 -3.4210 -0.9274 14 6 2.7974 -3.2085 -1.9162 15 6 2.2111 -3.3912 -3.3197 16 6 1.5330 -4.7601 -3.4108 17 6 0.3895 -4.8333 -2.3964 18 1 -0.3272 -4.0371 -2.5982 19 6 -0.2982 -6.1695 -2.5091 20 1 0.0459 -6.8946 -3.2317 21 6 -1.3667 -6.4662 -1.6898 22 7 -1.7861 -5.5829 -0.8103 23 14 -2.2187 -8.1228 -1.8291 24 1 -1.5666 -9.0933 -0.9136 25 1 -3.6492 -7.9765 -1.4580 26 1 -2.1176 -8.6155 -3.2263 27 6 0.9587 -4.6694 -0.9789 28 1 -0.3634 -0.0912 1.0236 29 1 -0.3633 0.9321 -0.4327 30 1 -0.3633 -0.8409 -0.5908 31 1 1.6585 2.1294 -0.0004 32 1 4.1183 2.1331 -0.0095 33 1 4.1493 -2.1301 0.0000 34 1 3.1941 -2.1984 -1.8146 35 1 3.5959 -3.9327 -1.7543 36 1 1.4777 -2.6084 -3.5124 37 1 3.0105 -3.3313 -4.0585 38 1 1.1365 -4.9028 -4.4160 39 1 2.2616 -5.5414 -3.1937 40 1 -2.5376 -5.7919 -0.2336 41 1 1.6091 -5.5119 -0.7438 42 1 0.1419 -4.6234 -0.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:22 Heat of formation + Delta-G solvation = -18.900636 kcal Electronic energy + Delta-G solvation = -27182.997702 eV Core-core repulsion = 23323.999383 eV Total energy + Delta-G solvation = -3858.998319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32456 -40.60885 -38.72233 -36.85740 -36.68646 -33.73378 -33.48623 -32.19102 -31.52190 -29.81767 -28.77724 -25.73242 -25.22740 -25.01751 -23.47489 -22.22894 -21.77179 -20.54262 -19.35169 -18.82085 -18.09913 -17.66116 -16.94845 -16.23231 -16.15031 -15.91842 -15.45537 -14.73320 -14.53211 -14.25143 -13.92267 -13.78497 -13.62700 -12.91080 -12.75635 -12.66241 -12.54499 -12.39574 -12.11486 -12.00357 -11.92607 -11.65968 -11.31457 -11.26129 -11.11112 -11.00525 -10.62862 -10.53169 -10.35024 -10.03104 -9.74869 -9.57058 -9.40698 -9.21449 -9.04650 -8.54354 -7.96355 -6.10172 -4.18332 -0.34164 0.48581 1.14350 1.23131 2.70666 3.10708 3.25419 3.33005 3.34951 3.43691 4.09841 4.18631 4.33853 4.35494 4.48055 4.63538 4.86707 5.09808 5.19900 5.21754 5.28631 5.34745 5.37394 5.49993 5.53863 5.54665 5.77680 5.86527 5.95387 6.03800 6.12288 6.18577 6.28256 6.47138 6.52282 6.72396 6.84131 6.97521 7.05939 7.49081 7.51108 7.72841 7.85243 8.01267 8.26065 8.52520 8.85521 9.47944 10.95534 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.003651 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.556636 B = 7666.445120 C = 8381.754587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.015 3.985 3 C -0.124 4.124 4 C -0.041 4.041 5 C -0.060 4.060 6 N 0.033 4.967 7 O -0.160 6.160 8 O -0.164 6.164 9 C -0.024 4.024 10 C -0.115 4.115 11 C 0.549 3.451 12 O -0.519 6.519 13 N -0.592 5.592 14 C 0.099 3.901 15 C -0.133 4.133 16 C -0.112 4.112 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.882 5.882 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.112 3.888 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 13.817 -0.130 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 C -0.143 4.143 4 C -0.060 4.060 5 C -0.143 4.143 6 N 0.552 4.448 7 O -0.376 6.376 8 O -0.379 6.379 9 C -0.044 4.044 10 C -0.119 4.119 11 C 0.335 3.665 12 O -0.396 6.396 13 N -0.324 5.324 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.149 4.149 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.560 4.560 20 H 0.078 0.922 21 C -0.139 4.139 22 N -0.519 5.519 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.108 13.679 0.462 15.422 hybrid contribution 0.116 -0.876 -0.093 0.889 sum 7.223 12.802 0.369 14.704 Atomic orbital electron populations 1.21043 0.88658 1.03955 1.04679 1.20490 0.97950 0.91221 0.88926 1.21073 0.92353 0.98636 1.02210 1.21129 0.94613 0.97058 0.93249 1.20913 0.79342 0.96729 1.17276 1.43565 1.03507 1.00443 0.97335 1.94563 1.68356 1.21271 1.53433 1.94517 1.69682 1.20093 1.53653 1.21163 0.93543 0.97629 0.92045 1.20150 0.92153 0.95614 1.03975 1.17919 0.83097 0.82737 0.82787 1.90844 1.33617 1.78612 1.36490 1.48539 1.35051 1.20043 1.28777 1.21908 0.90197 1.00756 0.89574 1.21938 0.99965 1.00202 0.94977 1.21643 0.98764 0.93874 1.00645 1.19049 0.91887 0.97707 0.89141 0.95228 1.21075 1.14417 1.00379 1.20116 0.92248 1.25043 0.96729 0.97006 0.95155 1.69867 1.26473 1.34111 1.21495 0.86573 0.78821 0.84097 0.78418 1.20577 1.21177 1.19890 1.22525 0.94821 0.79881 1.03568 0.88763 0.90591 0.89642 0.82982 0.82718 0.82453 0.91352 0.91215 0.92149 0.91986 0.92790 0.92967 0.92598 0.93410 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.00 36.00 0.32 -1.15 16 2 C 0.02 0.18 5.91 -104.23 -0.62 -0.44 16 3 C -0.12 -1.08 9.67 -39.64 -0.38 -1.47 16 4 C -0.04 -0.39 9.55 -39.49 -0.38 -0.77 16 5 C -0.06 -0.71 6.85 -80.00 -0.55 -1.26 16 6 N 0.03 0.44 4.45 33.93 0.15 0.59 16 7 O -0.16 -2.32 18.44 -29.46 -0.54 -2.87 16 8 O -0.16 -2.22 18.44 -29.46 -0.54 -2.76 16 9 C -0.02 -0.31 6.93 -39.19 -0.27 -0.58 16 10 C -0.11 -1.62 4.89 -104.97 -0.51 -2.14 16 11 C 0.55 10.11 6.17 -12.33 -0.08 10.03 16 12 O -0.52 -11.49 15.60 5.31 0.08 -11.40 16 13 N -0.59 -11.03 2.97 -173.61 -0.51 -11.55 16 14 C 0.10 1.48 5.51 -3.71 -0.02 1.46 16 15 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 16 C -0.11 -2.10 5.10 -26.69 -0.14 -2.23 16 17 C 0.04 0.96 2.26 -91.43 -0.21 0.75 16 18 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 19 C -0.52 -13.51 8.56 -34.44 -0.29 -13.80 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.88 -24.50 11.41 55.43 0.63 -23.87 16 23 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.11 2.53 5.42 -3.49 -0.02 2.51 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 30 H 0.08 1.25 7.18 -51.93 -0.37 0.88 16 31 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.16 1.12 7.60 -52.49 -0.40 0.72 16 33 H 0.16 1.98 6.90 -52.49 -0.36 1.61 16 34 H 0.07 0.89 4.74 -51.93 -0.25 0.64 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.12 3.30 5.17 -51.93 -0.27 3.03 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -29.85 348.25 -9.31 -39.16 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.41 Total: 1.57 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.39 Total: -9.67 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.27 Total: -34.83 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.00 Total: -17.03 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.85 -9.31 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.263 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds