Wall clock time and date at job start Tue Mar 31 2020 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37989 * 120.07722 * 2 1 4 4 C 1.38337 * 120.14594 * 180.25546 * 3 2 1 5 5 C 1.38381 * 120.28973 * 359.76591 * 4 3 2 6 6 N 1.48022 * 119.92168 * 179.97438 * 5 4 3 7 7 O 1.21801 * 119.99652 * 179.97438 * 6 5 4 8 8 O 1.21795 * 120.00133 * 359.97438 * 6 5 4 9 9 C 1.37932 * 120.14909 * 359.95276 * 5 4 3 10 10 C 1.39552 * 120.07553 * 179.72003 * 2 1 3 11 11 C 1.47850 * 120.14355 * 359.97438 * 10 2 1 12 12 O 1.21558 * 119.99633 * 305.68566 * 11 10 2 13 13 N 1.34779 * 120.00168 * 125.95912 * 11 10 2 14 14 C 1.46926 * 120.62850 * 3.70688 * 13 11 10 15 15 C 1.53195 * 108.76971 * 233.58386 * 14 13 11 16 16 C 1.53033 * 109.31429 * 305.36329 * 15 14 13 17 17 C 1.53040 * 109.53934 * 61.36546 * 16 15 14 18 18 H 1.09005 * 109.49065 * 58.62217 * 17 16 15 19 19 C 1.50701 * 109.49884 * 178.68071 * 17 16 15 20 20 H 1.07994 * 120.00140 * 0.02562 * 19 17 16 21 21 C 1.37881 * 119.99697 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99972 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99520 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47052 * 90.00484 * 23 21 19 25 25 H 1.48506 * 109.46865 * 209.99957 * 23 21 19 26 26 H 1.48498 * 109.47386 * 330.00188 * 23 21 19 27 27 C 1.46922 * 120.62770 * 183.42057 * 13 11 10 28 28 H 1.09004 * 109.47247 * 264.90829 * 1 2 3 29 29 H 1.09001 * 109.47035 * 24.90342 * 1 2 3 30 30 H 1.09000 * 109.47170 * 144.90814 * 1 2 3 31 31 H 1.07999 * 119.92499 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.85045 * 179.74070 * 4 3 2 33 33 H 1.08002 * 120.07594 * 180.02562 * 9 5 4 34 34 H 1.08995 * 109.58726 * 353.36985 * 14 13 11 35 35 H 1.09002 * 109.58959 * 113.65403 * 14 13 11 36 36 H 1.08997 * 109.49975 * 65.31806 * 15 14 13 37 37 H 1.09010 * 109.49551 * 185.41412 * 15 14 13 38 38 H 1.08997 * 109.46282 * 181.39120 * 16 15 14 39 39 H 1.09009 * 109.45864 * 301.34720 * 16 15 14 40 40 H 0.97008 * 119.99575 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.59006 * 246.19903 * 27 13 11 42 42 H 1.08995 * 109.59171 * 6.63438 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2812 0.0017 -0.0058 6 7 5.7614 0.0130 -0.0121 7 8 6.3784 -1.0372 -0.0121 8 8 6.3623 1.0723 -0.0173 9 6 3.6022 -1.1989 0.0000 10 6 2.2063 -1.2076 0.0059 11 6 1.4719 -2.4908 0.0127 12 8 0.6374 -2.7089 0.8693 13 7 1.7317 -3.4210 -0.9274 14 6 2.7974 -3.2085 -1.9162 15 6 2.2111 -3.3912 -3.3197 16 6 1.5330 -4.7601 -3.4108 17 6 0.3895 -4.8333 -2.3964 18 1 -0.3272 -4.0371 -2.5982 19 6 -0.2982 -6.1695 -2.5091 20 1 0.0459 -6.8946 -3.2317 21 6 -1.3667 -6.4662 -1.6898 22 7 -1.7861 -5.5829 -0.8103 23 14 -2.2187 -8.1228 -1.8291 24 1 -1.5666 -9.0933 -0.9136 25 1 -3.6492 -7.9765 -1.4580 26 1 -2.1176 -8.6155 -3.2263 27 6 0.9587 -4.6694 -0.9789 28 1 -0.3634 -0.0912 1.0236 29 1 -0.3633 0.9321 -0.4327 30 1 -0.3633 -0.8409 -0.5908 31 1 1.6585 2.1294 -0.0004 32 1 4.1183 2.1331 -0.0095 33 1 4.1493 -2.1301 0.0000 34 1 3.1941 -2.1984 -1.8146 35 1 3.5959 -3.9327 -1.7543 36 1 1.4777 -2.6084 -3.5124 37 1 3.0105 -3.3313 -4.0585 38 1 1.1365 -4.9028 -4.4160 39 1 2.2616 -5.5414 -3.1937 40 1 -2.5376 -5.7919 -0.2336 41 1 1.6091 -5.5119 -0.7438 42 1 0.1419 -4.6234 -0.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:21 Heat of formation + Delta-G solvation = -34.832156 kcal Electronic energy + Delta-G solvation = -27183.688545 eV Core-core repulsion = 23323.999383 eV Total energy + Delta-G solvation = -3859.689161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32156 -41.82179 -39.94656 -38.40033 -37.70851 -35.43694 -34.49725 -33.73179 -32.70172 -31.45427 -29.75041 -27.25039 -26.88442 -26.07085 -24.60472 -23.66453 -22.92320 -21.81901 -20.76373 -19.82220 -19.43372 -18.65817 -18.52038 -17.91971 -17.21307 -16.89704 -16.84182 -16.55835 -15.73551 -15.37076 -15.27199 -14.99134 -14.88564 -14.55198 -14.39271 -13.89388 -13.68402 -13.48293 -13.45496 -13.19906 -12.94572 -12.89504 -12.72872 -12.66220 -12.35003 -12.31721 -12.31058 -12.27423 -11.93153 -11.70333 -11.26743 -11.02088 -10.86743 -10.56363 -10.45049 -10.38789 -9.56281 -8.14196 -6.29946 -1.31218 -0.44177 0.18090 0.26870 1.39432 1.41241 1.47580 1.51198 1.91470 2.19317 2.40608 3.07002 3.15592 3.29815 3.41310 3.59176 3.69482 3.88540 3.95013 4.05360 4.23153 4.33112 4.42547 4.49258 4.54531 4.60557 4.64325 4.64651 4.70071 4.76088 4.95718 5.01844 5.08688 5.15467 5.16016 5.18985 5.28939 5.37142 5.44469 5.56368 5.83897 5.93005 6.28920 6.44530 6.46337 6.81226 7.05573 7.40206 8.89611 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.003651 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.556636 B = 7666.445120 C = 8381.754587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.012 3.988 3 C -0.099 4.099 4 C -0.022 4.022 5 C -0.065 4.065 6 N 0.034 4.966 7 O -0.200 6.200 8 O -0.147 6.147 9 C -0.025 4.025 10 C -0.134 4.134 11 C 0.547 3.453 12 O -0.570 6.570 13 N -0.598 5.598 14 C 0.097 3.903 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.041 3.959 18 H -0.008 1.008 19 C -0.537 4.537 20 H 0.061 0.939 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.125 3.875 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.043 0.957 31 H 0.201 0.799 32 H 0.189 0.811 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.260 0.740 41 H 0.039 0.961 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 16.507 -1.206 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.011 3.989 3 C -0.117 4.117 4 C -0.041 4.041 5 C -0.149 4.149 6 N 0.550 4.450 7 O -0.407 6.407 8 O -0.368 6.368 9 C -0.045 4.045 10 C -0.138 4.138 11 C 0.334 3.666 12 O -0.450 6.450 13 N -0.328 5.328 14 C -0.025 4.025 15 C -0.163 4.163 16 C -0.144 4.144 17 C 0.022 3.978 18 H 0.011 0.989 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.186 4.186 22 N -0.552 5.552 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.188 1.188 27 C 0.004 3.996 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.218 0.782 32 H 0.206 0.794 33 H 0.170 0.830 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.734 16.295 -0.647 18.500 hybrid contribution -0.384 -1.573 0.252 1.639 sum 8.350 14.722 -0.395 16.930 Atomic orbital electron populations 1.21017 0.88971 1.04318 1.03777 1.20662 0.97926 0.91550 0.88795 1.21495 0.91998 0.98849 0.99324 1.21601 0.94832 0.97184 0.90449 1.20993 0.78405 0.97337 1.18127 1.43742 1.04069 1.00204 0.96961 1.94582 1.68958 1.21554 1.55567 1.94491 1.70113 1.19915 1.52327 1.20983 0.92778 0.98262 0.92474 1.19713 0.92508 0.94046 1.07517 1.18569 0.82491 0.83915 0.81581 1.90801 1.36021 1.79814 1.38356 1.48503 1.35473 1.18945 1.29921 1.22171 0.89270 1.02763 0.88319 1.21895 1.00712 0.97525 0.96129 1.21529 0.97352 0.96487 0.98999 1.18964 0.92759 0.95256 0.90846 0.98948 1.21498 1.14687 1.01500 1.19806 0.92049 1.25830 0.97618 1.00256 0.94895 1.70052 1.26820 1.35959 1.22341 0.85597 0.77505 0.80083 0.78746 1.20216 1.21249 1.18818 1.21917 0.93917 0.81713 1.02079 0.89606 0.86449 0.93766 0.78244 0.79416 0.82959 0.88816 0.89794 0.92714 0.88039 0.92640 0.92429 0.93056 0.94223 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.00 71.23 0.64 -2.15 16 2 C 0.01 0.25 5.91 -19.61 -0.12 0.14 16 3 C -0.10 -1.22 9.67 22.23 0.21 -1.01 16 4 C -0.02 -0.30 9.55 22.33 0.21 -0.09 16 5 C -0.07 -1.37 6.85 36.34 0.25 -1.12 16 6 N 0.03 0.83 4.45 -46.55 -0.21 0.62 16 7 O -0.20 -5.60 18.44 18.89 0.35 -5.25 16 8 O -0.15 -3.47 18.44 18.89 0.35 -3.12 16 9 C -0.03 -0.61 6.93 22.53 0.16 -0.46 16 10 C -0.13 -3.73 4.89 -20.09 -0.10 -3.83 16 11 C 0.55 21.15 6.17 86.79 0.54 21.69 16 12 O -0.57 -27.22 15.60 -3.90 -0.06 -27.28 16 13 N -0.60 -23.22 2.97 -821.47 -2.44 -25.65 16 14 C 0.10 2.81 5.51 86.36 0.48 3.28 16 15 C -0.12 -3.63 6.08 30.67 0.19 -3.45 16 16 C -0.11 -3.97 5.10 30.62 0.16 -3.82 16 17 C 0.04 1.99 2.26 -11.32 -0.03 1.97 16 18 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 19 C -0.54 -28.78 8.56 25.60 0.22 -28.56 16 20 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 21 C 0.01 0.75 5.30 84.66 0.45 1.20 16 22 N -0.91 -53.66 11.41 21.45 0.24 -53.42 16 23 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 27 C 0.13 6.06 5.42 86.51 0.47 6.53 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.12 1.57 8.05 -2.39 -0.02 1.55 16 30 H 0.04 1.36 7.18 -2.39 -0.02 1.34 16 31 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.19 1.46 7.60 -2.91 -0.02 1.44 16 33 H 0.15 3.78 6.90 -2.91 -0.02 3.76 16 34 H 0.09 2.29 4.74 -2.39 -0.01 2.28 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 4.70 5.17 -2.39 -0.01 4.69 16 Total: -1.00 -71.50 348.25 5.03 -66.46 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.05 Total: 11.96 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 3.72 Total: -9.67 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -2.40 Total: -78.45 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: 0.64 Total: -35.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.50 5.03 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.631 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds