Wall clock time and date at job start Tue Mar 31 2020 13:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37972 * 119.92358 * 2 1 4 4 C 1.39559 * 119.84923 * 179.97438 * 3 2 1 5 5 C 1.47850 * 120.14576 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99377 * 28.61347 * 5 4 3 7 7 N 1.34769 * 120.00264 * 208.60595 * 5 4 3 8 8 C 1.46934 * 120.62931 * 5.84448 * 7 5 4 9 9 C 1.53628 * 108.54168 * 126.37279 * 8 7 5 10 10 C 1.53042 * 109.24358 * 54.85223 * 9 8 7 11 11 C 1.53040 * 109.54054 * 298.51457 * 10 9 8 12 12 H 1.09007 * 109.49649 * 301.41304 * 11 10 9 13 13 C 1.50696 * 109.52433 * 181.33262 * 11 10 9 14 14 H 1.07999 * 120.00027 * 0.14597 * 13 11 10 15 15 C 1.37876 * 120.00154 * 180.14375 * 13 11 10 16 16 N 1.31522 * 119.99758 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00215 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47129 * 60.00235 * 17 15 13 19 19 H 1.48504 * 109.47329 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47162 * 299.99957 * 17 15 13 21 21 C 1.46928 * 120.63108 * 186.12596 * 7 5 4 22 22 C 1.39594 * 119.71385 * 0.02562 * 4 3 2 23 23 C 1.37944 * 119.85046 * 359.97438 * 22 4 3 24 24 C 1.38333 * 119.92534 * 179.72391 * 2 1 3 25 25 N 1.48012 * 119.85451 * 0.02562 * 24 2 1 26 26 O 1.21803 * 120.00239 * 186.20161 * 25 24 2 27 27 O 1.21801 * 120.00086 * 6.20113 * 25 24 2 28 28 H 1.09003 * 109.46992 * 96.92040 * 1 2 3 29 29 H 1.08998 * 109.47224 * 336.92726 * 1 2 3 30 30 H 1.08997 * 109.47216 * 216.92311 * 1 2 3 31 31 H 1.07999 * 120.08189 * 359.96018 * 3 2 1 32 32 H 1.08997 * 109.58337 * 246.19745 * 8 7 5 33 33 H 1.08990 * 109.58809 * 6.62643 * 8 7 5 34 34 H 1.09007 * 109.62946 * 294.86588 * 9 8 7 35 35 H 1.08997 * 109.43133 * 174.72928 * 9 8 7 36 36 H 1.08999 * 109.45903 * 178.49302 * 10 9 8 37 37 H 1.08996 * 109.44658 * 58.52999 * 10 9 8 38 38 H 0.97000 * 119.99658 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.58635 * 353.37452 * 21 7 5 40 40 H 1.09004 * 109.58775 * 113.65419 * 21 7 5 41 41 H 1.07996 * 120.07748 * 179.97438 * 22 4 3 42 42 H 1.07997 * 119.92972 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5909 1.1940 0.0005 5 6 4.3351 2.4716 0.0011 6 8 3.8421 3.4617 0.5053 7 7 5.5599 2.5383 -0.5572 8 6 6.1160 1.3873 -1.2818 9 6 6.5441 1.8521 -2.6821 10 6 7.5059 3.0350 -2.5488 11 6 6.7945 4.1973 -1.8525 12 1 5.9141 4.4825 -2.4285 13 6 7.7316 5.3731 -1.7507 14 1 8.7342 5.3003 -2.1455 15 6 7.3090 6.5418 -1.1537 16 7 6.0878 6.6307 -0.6734 17 14 8.4703 7.9995 -1.0282 18 1 8.8836 8.4218 -2.3906 19 1 7.7798 9.1256 -0.3498 20 1 9.6704 7.6103 -0.2452 21 6 6.3669 3.7611 -0.4476 22 6 4.2813 -0.0193 0.0005 23 6 3.5809 -1.2078 0.0005 24 6 2.1972 -1.1989 0.0058 25 7 1.4522 -2.4778 0.0114 26 8 2.0517 -3.5314 0.1304 27 8 0.2396 -2.4768 -0.1031 28 1 -0.3633 -0.1238 -1.0202 29 1 -0.3633 0.9454 0.4027 30 1 -0.3633 -0.8215 0.6173 31 1 1.6554 2.1311 -0.0006 32 1 6.9801 0.9991 -0.7427 33 1 5.3575 0.6095 -1.3693 34 1 5.6660 2.1594 -3.2503 35 1 7.0440 1.0330 -3.1989 36 1 7.8329 3.3505 -3.5396 37 1 8.3720 2.7339 -1.9595 38 1 5.7907 7.4528 -0.2531 39 1 5.7741 4.5500 0.0154 40 1 7.2498 3.5631 0.1603 41 1 5.3612 -0.0276 0.0005 42 1 4.1137 -2.1472 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:11 Heat of formation + Delta-G solvation = 1.210901 kcal Electronic energy + Delta-G solvation = -26740.356690 eV Core-core repulsion = 22882.230473 eV Total energy + Delta-G solvation = -3858.126217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44774 -40.63578 -38.78660 -36.92292 -36.85284 -34.15845 -33.02732 -32.20128 -31.83550 -29.95039 -28.17010 -26.79390 -25.24761 -24.85101 -22.97099 -22.59857 -21.93754 -20.23982 -19.29967 -18.86969 -18.79940 -17.77992 -17.06617 -16.25921 -16.21493 -15.47789 -15.05668 -14.83618 -14.59431 -14.27400 -14.00941 -13.97666 -13.47644 -13.23575 -12.99909 -12.80939 -12.74498 -12.57363 -12.30314 -12.02618 -11.76302 -11.58608 -11.32150 -11.06041 -10.95752 -10.86831 -10.65655 -10.54895 -10.36045 -10.04785 -9.84775 -9.59814 -9.35358 -9.24093 -9.03808 -8.54972 -7.99777 -6.10048 -4.19344 -0.48671 0.64351 1.00099 1.20508 2.61639 3.19714 3.27080 3.31899 3.32975 3.46053 4.04962 4.07201 4.31808 4.36644 4.53806 4.59977 4.83854 5.05438 5.11279 5.20044 5.27446 5.29558 5.32813 5.42149 5.45780 5.62939 5.73867 5.77063 5.80238 5.94728 5.99200 6.15164 6.32178 6.44880 6.48958 6.68756 6.82250 6.93129 7.03648 7.48109 7.48226 7.72067 7.83375 7.98688 8.24856 8.48417 8.84504 9.47004 10.95200 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.003048 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.659745 B = 9182.648497 C = 9880.382022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C -0.073 4.073 4 C -0.058 4.058 5 C 0.539 3.461 6 O -0.517 6.517 7 N -0.592 5.592 8 C 0.082 3.918 9 C -0.134 4.134 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.030 0.970 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.110 3.890 22 C -0.111 4.111 23 C -0.059 4.059 24 C -0.040 4.040 25 N 0.033 4.967 26 O -0.169 6.169 27 O -0.159 6.159 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.125 0.875 40 H 0.048 0.952 41 H 0.166 0.834 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -15.386 0.409 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 C -0.092 4.092 4 C -0.062 4.062 5 C 0.324 3.676 6 O -0.394 6.394 7 N -0.323 5.323 8 C -0.041 4.041 9 C -0.172 4.172 10 C -0.149 4.149 11 C 0.022 3.978 12 H 0.048 0.952 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.009 4.009 22 C -0.129 4.129 23 C -0.078 4.078 24 C -0.124 4.124 25 N 0.549 4.451 26 O -0.382 6.382 27 O -0.373 6.373 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.175 0.825 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.183 0.817 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.854 -14.093 0.774 15.280 hybrid contribution 0.593 0.432 0.011 0.733 sum -5.261 -13.661 0.785 14.660 Atomic orbital electron populations 1.21335 0.88122 1.04774 1.04661 1.19842 0.98299 0.90085 0.93933 1.21275 0.92711 0.97842 0.97383 1.20794 0.94579 0.94894 0.95923 1.18093 0.81919 0.87016 0.80538 1.90853 1.67187 1.35625 1.45762 1.48484 1.15777 1.16647 1.51430 1.22548 0.98736 0.89048 0.93797 1.22040 1.00564 0.99285 0.95347 1.21644 0.97366 0.95241 1.00698 1.18958 0.95949 0.91729 0.91182 0.95214 1.21027 0.99142 0.96744 1.39256 0.92312 1.25058 0.95129 0.98674 0.95145 1.69864 1.16320 1.27471 1.38143 0.86627 0.80888 0.82032 0.78300 1.20238 1.21207 1.20207 1.22447 0.93542 0.83598 1.01309 1.21886 1.01992 0.90039 0.99026 1.20975 0.90777 1.00660 0.95369 1.21105 0.92435 0.83187 1.15683 1.43587 1.01127 1.02757 0.97586 1.94537 1.70427 1.19770 1.53456 1.94468 0.96276 1.93731 1.52843 0.89196 0.90449 0.88291 0.82462 0.91179 0.89393 0.92022 0.91933 0.92808 0.93039 0.92493 0.85681 0.93392 0.81671 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.68 36.01 0.31 -0.88 16 2 C -0.02 -0.22 5.87 -104.68 -0.61 -0.84 16 3 C -0.07 -0.89 9.22 -39.19 -0.36 -1.25 16 4 C -0.06 -0.79 5.49 -104.97 -0.58 -1.36 16 5 C 0.54 9.75 7.46 -12.33 -0.09 9.66 16 6 O -0.52 -11.60 16.10 5.32 0.09 -11.52 16 7 N -0.59 -10.62 2.97 -173.61 -0.51 -11.13 16 8 C 0.08 1.09 4.73 -3.48 -0.02 1.07 16 9 C -0.13 -1.94 6.10 -26.38 -0.16 -2.11 16 10 C -0.11 -2.05 5.11 -26.69 -0.14 -2.18 16 11 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 12 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 13 C -0.52 -13.52 8.57 -34.44 -0.30 -13.82 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 16 N -0.88 -24.68 11.39 55.43 0.63 -24.05 16 17 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.11 2.47 5.41 -3.71 -0.02 2.45 16 22 C -0.11 -1.16 7.42 -39.18 -0.29 -1.45 16 23 C -0.06 -0.58 9.54 -39.64 -0.38 -0.96 16 24 C -0.04 -0.46 6.84 -79.86 -0.55 -1.01 16 25 N 0.03 0.41 4.45 34.00 0.15 0.57 16 26 O -0.17 -2.20 18.45 -29.46 -0.54 -2.74 16 27 O -0.16 -2.00 15.32 -29.46 -0.45 -2.45 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 30 H 0.10 0.93 5.82 -51.93 -0.30 0.62 16 31 H 0.16 1.90 7.90 -52.49 -0.41 1.48 16 32 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 33 H 0.09 0.95 4.04 -51.93 -0.21 0.74 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 3.32 5.11 -51.93 -0.27 3.05 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.17 1.45 5.30 -52.49 -0.28 1.17 16 42 H 0.16 1.21 7.61 -52.49 -0.40 0.81 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -30.20 342.40 -9.18 -39.38 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.20 Total: 1.60 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.48 Total: -10.35 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.27 Total: -34.62 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.91 Total: -16.71 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.20 -9.18 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.592 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds