Wall clock time and date at job start Tue Mar 31 2020 13:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37972 * 119.92358 * 2 1 4 4 C 1.39559 * 119.84923 * 179.97438 * 3 2 1 5 5 C 1.47850 * 120.14576 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99377 * 28.61347 * 5 4 3 7 7 N 1.34769 * 120.00264 * 208.60595 * 5 4 3 8 8 C 1.46934 * 120.62931 * 5.84448 * 7 5 4 9 9 C 1.53628 * 108.54168 * 126.37279 * 8 7 5 10 10 C 1.53042 * 109.24358 * 54.85223 * 9 8 7 11 11 C 1.53040 * 109.54054 * 298.51457 * 10 9 8 12 12 H 1.09007 * 109.49649 * 301.41304 * 11 10 9 13 13 C 1.50696 * 109.52433 * 181.33262 * 11 10 9 14 14 H 1.07999 * 120.00027 * 0.14597 * 13 11 10 15 15 C 1.37876 * 120.00154 * 180.14375 * 13 11 10 16 16 N 1.31522 * 119.99758 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00215 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47129 * 60.00235 * 17 15 13 19 19 H 1.48504 * 109.47329 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47162 * 299.99957 * 17 15 13 21 21 C 1.46928 * 120.63108 * 186.12596 * 7 5 4 22 22 C 1.39594 * 119.71385 * 0.02562 * 4 3 2 23 23 C 1.37944 * 119.85046 * 359.97438 * 22 4 3 24 24 C 1.38333 * 119.92534 * 179.72391 * 2 1 3 25 25 N 1.48012 * 119.85451 * 0.02562 * 24 2 1 26 26 O 1.21803 * 120.00239 * 186.20161 * 25 24 2 27 27 O 1.21801 * 120.00086 * 6.20113 * 25 24 2 28 28 H 1.09003 * 109.46992 * 96.92040 * 1 2 3 29 29 H 1.08998 * 109.47224 * 336.92726 * 1 2 3 30 30 H 1.08997 * 109.47216 * 216.92311 * 1 2 3 31 31 H 1.07999 * 120.08189 * 359.96018 * 3 2 1 32 32 H 1.08997 * 109.58337 * 246.19745 * 8 7 5 33 33 H 1.08990 * 109.58809 * 6.62643 * 8 7 5 34 34 H 1.09007 * 109.62946 * 294.86588 * 9 8 7 35 35 H 1.08997 * 109.43133 * 174.72928 * 9 8 7 36 36 H 1.08999 * 109.45903 * 178.49302 * 10 9 8 37 37 H 1.08996 * 109.44658 * 58.52999 * 10 9 8 38 38 H 0.97000 * 119.99658 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.58635 * 353.37452 * 21 7 5 40 40 H 1.09004 * 109.58775 * 113.65419 * 21 7 5 41 41 H 1.07996 * 120.07748 * 179.97438 * 22 4 3 42 42 H 1.07997 * 119.92972 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5909 1.1940 0.0005 5 6 4.3351 2.4716 0.0011 6 8 3.8421 3.4617 0.5053 7 7 5.5599 2.5383 -0.5572 8 6 6.1160 1.3873 -1.2818 9 6 6.5441 1.8521 -2.6821 10 6 7.5059 3.0350 -2.5488 11 6 6.7945 4.1973 -1.8525 12 1 5.9141 4.4825 -2.4285 13 6 7.7316 5.3731 -1.7507 14 1 8.7342 5.3003 -2.1455 15 6 7.3090 6.5418 -1.1537 16 7 6.0878 6.6307 -0.6734 17 14 8.4703 7.9995 -1.0282 18 1 8.8836 8.4218 -2.3906 19 1 7.7798 9.1256 -0.3498 20 1 9.6704 7.6103 -0.2452 21 6 6.3669 3.7611 -0.4476 22 6 4.2813 -0.0193 0.0005 23 6 3.5809 -1.2078 0.0005 24 6 2.1972 -1.1989 0.0058 25 7 1.4522 -2.4778 0.0114 26 8 2.0517 -3.5314 0.1304 27 8 0.2396 -2.4768 -0.1031 28 1 -0.3633 -0.1238 -1.0202 29 1 -0.3633 0.9454 0.4027 30 1 -0.3633 -0.8215 0.6173 31 1 1.6554 2.1311 -0.0006 32 1 6.9801 0.9991 -0.7427 33 1 5.3575 0.6095 -1.3693 34 1 5.6660 2.1594 -3.2503 35 1 7.0440 1.0330 -3.1989 36 1 7.8329 3.3505 -3.5396 37 1 8.3720 2.7339 -1.9595 38 1 5.7907 7.4528 -0.2531 39 1 5.7741 4.5500 0.0154 40 1 7.2498 3.5631 0.1603 41 1 5.3612 -0.0276 0.0005 42 1 4.1137 -2.1472 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397590939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:09 Heat of formation + Delta-G solvation = -15.104481 kcal Electronic energy + Delta-G solvation = -26741.064178 eV Core-core repulsion = 22882.230473 eV Total energy + Delta-G solvation = -3858.833705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.38302 -41.82525 -39.95787 -38.42752 -37.80263 -35.63938 -34.35246 -33.42897 -33.04645 -31.54646 -29.05781 -28.00351 -26.85139 -26.21840 -24.02034 -23.73901 -23.22376 -21.65682 -20.25198 -20.24430 -19.79174 -18.71120 -18.60838 -17.89659 -17.42850 -16.67773 -16.57741 -16.04216 -15.94749 -15.54783 -15.19890 -14.90445 -14.68374 -14.47420 -14.44513 -14.09978 -13.88952 -13.82469 -13.50105 -13.37386 -12.88084 -12.79493 -12.58666 -12.52031 -12.29716 -12.28957 -12.18426 -11.85134 -11.75690 -11.63765 -11.27825 -10.98974 -10.87905 -10.67945 -10.53901 -10.14433 -9.52766 -8.13006 -6.29934 -1.45065 -0.20691 0.01193 0.28378 1.40909 1.41145 1.48558 1.49831 1.91914 2.28096 2.40706 3.13892 3.19499 3.22009 3.26181 3.66155 3.67258 3.93590 4.04374 4.13651 4.24735 4.34786 4.46989 4.52871 4.53759 4.62646 4.69937 4.73339 4.79609 4.82525 4.91435 4.98129 5.06283 5.07182 5.20567 5.23940 5.32354 5.44517 5.47830 5.58579 5.87391 5.96769 6.29888 6.47158 6.51016 6.82588 7.06716 7.40629 8.89940 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.003048 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.659745 B = 9182.648497 C = 9880.382022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 C -0.079 4.079 4 C -0.071 4.071 5 C 0.534 3.466 6 O -0.577 6.577 7 N -0.595 5.595 8 C 0.075 3.925 9 C -0.129 4.129 10 C -0.107 4.107 11 C 0.038 3.962 12 H -0.016 1.016 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.011 3.989 16 N -0.914 5.914 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.124 3.876 22 C -0.098 4.098 23 C -0.041 4.041 24 C -0.046 4.046 25 N 0.033 4.967 26 O -0.175 6.175 27 O -0.164 6.164 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.191 0.809 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -18.424 -0.098 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.017 4.017 3 C -0.098 4.098 4 C -0.074 4.074 5 C 0.322 3.678 6 O -0.457 6.457 7 N -0.325 5.325 8 C -0.045 4.045 9 C -0.167 4.167 10 C -0.144 4.144 11 C 0.019 3.981 12 H 0.003 0.997 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.553 5.553 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.191 1.191 21 C 0.002 3.998 22 C -0.116 4.116 23 C -0.060 4.060 24 C -0.129 4.129 25 N 0.548 4.452 26 O -0.387 6.387 27 O -0.378 6.378 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.208 0.792 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.603 -17.187 0.239 17.794 hybrid contribution 0.167 1.341 0.144 1.359 sum -4.436 -15.846 0.382 16.460 Atomic orbital electron populations 1.21398 0.86904 1.05378 1.05243 1.19917 0.99185 0.89462 0.93168 1.21216 0.92472 0.98200 0.97916 1.20410 0.94675 0.93570 0.98745 1.18764 0.81731 0.88070 0.79218 1.90817 1.68482 1.38234 1.48213 1.48452 1.15628 1.16620 1.51779 1.22997 1.00796 0.87891 0.92864 1.22023 0.99336 0.98922 0.96391 1.21533 0.98134 0.94893 0.99864 1.18896 0.94245 0.93310 0.91628 0.99738 1.21491 0.99657 0.97914 1.38423 0.91921 1.25868 0.96417 1.01521 0.95043 1.70068 1.18230 1.27690 1.39312 0.85646 0.79097 0.78689 0.78468 1.19527 1.21611 1.19090 1.21820 0.93123 0.84677 1.00196 1.22019 1.02990 0.88689 0.97905 1.21268 0.90052 1.01455 0.93225 1.21311 0.93176 0.82698 1.15755 1.43707 1.01151 1.02962 0.97429 1.94533 1.70377 1.20129 1.53665 1.94476 0.96511 1.93845 1.52985 0.88272 0.89348 0.88397 0.83281 0.88046 0.86029 0.93494 0.87397 0.93159 0.91883 0.93127 0.90369 0.93396 0.79201 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.68 71.24 0.62 -1.58 16 2 C -0.02 -0.32 5.87 -19.90 -0.12 -0.44 16 3 C -0.08 -1.88 9.22 22.53 0.21 -1.68 16 4 C -0.07 -1.82 5.49 -20.09 -0.11 -1.93 16 5 C 0.53 19.74 7.46 86.79 0.65 20.39 16 6 O -0.58 -27.61 16.10 -3.88 -0.06 -27.67 16 7 N -0.59 -21.24 2.97 -821.46 -2.44 -23.68 16 8 C 0.08 1.75 4.73 86.51 0.41 2.16 16 9 C -0.13 -3.35 6.10 30.82 0.19 -3.16 16 10 C -0.11 -3.77 5.11 30.62 0.16 -3.61 16 11 C 0.04 1.84 2.25 -11.46 -0.03 1.81 16 12 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 13 C -0.54 -28.41 8.57 25.60 0.22 -28.19 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.01 0.61 5.30 84.65 0.45 1.06 16 16 N -0.91 -54.10 11.39 21.45 0.24 -53.85 16 17 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C 0.12 5.73 5.41 86.36 0.47 6.20 16 22 C -0.10 -1.69 7.42 22.53 0.17 -1.52 16 23 C -0.04 -0.64 9.54 22.23 0.21 -0.43 16 24 C -0.05 -0.91 6.84 36.43 0.25 -0.66 16 25 N 0.03 0.73 4.45 -46.33 -0.21 0.52 16 26 O -0.17 -4.03 18.45 18.88 0.35 -3.68 16 27 O -0.16 -3.80 15.32 18.89 0.29 -3.51 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 30 H 0.10 1.68 5.82 -2.39 -0.01 1.66 16 31 H 0.15 3.77 7.90 -2.91 -0.02 3.74 16 32 H 0.10 1.83 8.01 -2.39 -0.02 1.81 16 33 H 0.12 2.06 4.04 -2.39 -0.01 2.05 16 34 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.08 4.43 5.11 -2.39 -0.01 4.42 16 40 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.19 2.35 5.30 -2.91 -0.02 2.33 16 42 H 0.19 1.84 7.61 -2.91 -0.02 1.81 16 Total: -1.00 -71.47 342.40 5.00 -66.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.06 Total: 11.90 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 3.74 Total: -11.58 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.40 Total: -77.01 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: 0.58 Total: -34.86 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.47 5.00 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.371 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds