Wall clock time and date at job start Tue Mar 31 2020 13:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37977 * 119.92997 * 2 1 4 4 C 1.39553 * 119.85152 * 179.97438 * 3 2 1 5 5 C 1.47849 * 120.14284 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00123 * 321.42359 * 5 4 3 7 7 N 1.34783 * 119.99915 * 141.42308 * 5 4 3 8 8 C 1.46924 * 120.62942 * 354.27942 * 7 5 4 9 9 C 1.53185 * 108.77357 * 233.58277 * 8 7 5 10 10 C 1.53044 * 109.31446 * 305.36424 * 9 8 7 11 11 C 1.53043 * 109.53400 * 61.36765 * 10 9 8 12 12 H 1.08997 * 109.50111 * 58.62099 * 11 10 9 13 13 C 1.50697 * 109.49249 * 178.68564 * 11 10 9 14 14 H 1.08000 * 120.00832 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99674 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00070 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99969 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46856 * 90.00059 * 17 15 13 19 19 H 1.48504 * 109.47096 * 210.00089 * 17 15 13 20 20 H 1.48500 * 109.47093 * 330.00011 * 17 15 13 21 21 C 1.46922 * 120.62836 * 173.99652 * 7 5 4 22 22 C 1.39599 * 119.71548 * 359.73476 * 4 3 2 23 23 C 1.37938 * 119.84910 * 0.51859 * 22 4 3 24 24 C 1.38344 * 119.92327 * 179.97438 * 2 1 3 25 25 N 1.48004 * 119.85388 * 359.97438 * 24 2 1 26 26 O 1.21804 * 120.00473 * 322.00574 * 25 24 2 27 27 O 1.21808 * 119.99817 * 142.01311 * 25 24 2 28 28 H 1.08996 * 109.47235 * 272.99608 * 1 2 3 29 29 H 1.09008 * 109.46658 * 32.99589 * 1 2 3 30 30 H 1.09003 * 109.46902 * 152.99182 * 1 2 3 31 31 H 1.07995 * 120.07252 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.58718 * 353.37104 * 8 7 5 33 33 H 1.08999 * 109.59013 * 113.65561 * 8 7 5 34 34 H 1.09000 * 109.50115 * 65.31941 * 9 8 7 35 35 H 1.09004 * 109.49851 * 185.41288 * 9 8 7 36 36 H 1.08997 * 109.45908 * 181.38343 * 10 9 8 37 37 H 1.09000 * 109.46168 * 301.35755 * 10 9 8 38 38 H 0.97001 * 119.99816 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.58676 * 246.20015 * 21 7 5 40 40 H 1.08993 * 109.59090 * 6.62633 * 21 7 5 41 41 H 1.07997 * 120.07752 * 180.27427 * 22 4 3 42 42 H 1.07999 * 119.92813 * 179.75451 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1938 0.0005 5 6 4.3351 2.4714 0.0000 6 8 3.9302 3.4103 -0.6572 7 7 5.4625 2.5949 0.7282 8 6 5.8971 1.5145 1.6240 9 6 6.1145 2.0935 3.0255 10 6 7.0891 3.2705 2.9413 11 6 6.4936 4.3655 2.0533 12 1 5.5380 4.6889 2.4658 13 6 7.4396 5.5372 1.9971 14 1 8.3723 5.5049 2.5406 15 6 7.1144 6.6506 1.2517 16 7 5.9784 6.6903 0.5903 17 14 8.2867 8.1034 1.1826 18 1 9.2286 7.9258 0.0484 19 1 7.5120 9.3559 0.9912 20 1 9.0512 8.1835 2.4531 21 6 6.2835 3.8099 0.6365 22 6 4.2812 -0.0195 0.0067 23 6 3.5809 -1.2079 0.0014 24 6 2.1971 -1.1990 0.0005 25 7 1.4521 -2.4779 0.0017 26 8 0.4275 -2.5853 0.6515 27 8 1.8637 -3.4231 -0.6471 28 1 -0.3633 0.0537 1.0262 29 1 -0.3633 0.8620 -0.5597 30 1 -0.3633 -0.9156 -0.4667 31 1 1.6555 2.1310 0.0004 32 1 5.1298 0.7413 1.6631 33 1 6.8290 1.0861 1.2548 34 1 5.1622 2.4379 3.4286 35 1 6.5288 1.3240 3.6769 36 1 7.2646 3.6688 3.9406 37 1 8.0330 2.9307 2.5149 38 1 5.7498 7.4735 0.0656 39 1 7.2476 3.5666 0.1898 40 1 5.7713 4.5516 0.0239 41 1 5.3612 -0.0278 0.0116 42 1 4.1137 -2.1473 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:15 Heat of formation + Delta-G solvation = -11.929060 kcal Electronic energy + Delta-G solvation = -26715.228626 eV Core-core repulsion = 22856.532617 eV Total energy + Delta-G solvation = -3858.696008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46049 -40.57832 -38.81448 -36.89714 -36.78427 -34.08602 -33.12043 -32.24326 -31.83710 -29.92747 -28.14260 -26.86956 -25.19274 -24.84982 -23.01606 -22.51948 -21.95592 -20.20409 -19.33202 -18.90795 -18.77458 -17.87618 -17.11465 -16.25279 -16.06179 -15.54678 -15.03947 -14.77915 -14.57471 -14.23536 -14.10739 -13.96599 -13.64596 -13.27548 -12.84573 -12.79099 -12.73436 -12.60213 -12.29855 -12.00701 -11.80003 -11.75922 -11.35089 -11.16614 -11.09238 -11.00417 -10.65550 -10.54866 -10.36986 -10.04712 -9.86253 -9.58040 -9.38013 -9.24297 -9.05101 -8.55788 -7.99390 -6.10107 -4.19146 -0.36173 0.62880 0.83197 1.16865 2.59490 3.15598 3.24958 3.32190 3.34085 3.42782 4.00671 4.07385 4.31634 4.36448 4.54794 4.59402 4.81194 4.97772 5.09773 5.20193 5.21357 5.25735 5.30484 5.40085 5.47706 5.59421 5.65491 5.75522 5.80693 5.90816 6.00076 6.15514 6.23335 6.44747 6.49411 6.69014 6.82155 6.93703 7.03501 7.41768 7.47986 7.72011 7.83585 7.98700 8.24947 8.48619 8.84877 9.47233 10.95265 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027135 B = 0.003029 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.612113 B = 9242.746354 C = 9782.871942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.027 4.027 3 C -0.069 4.069 4 C -0.061 4.061 5 C 0.540 3.460 6 O -0.517 6.517 7 N -0.593 5.593 8 C 0.094 3.906 9 C -0.134 4.134 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.030 0.970 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.111 3.889 22 C -0.096 4.096 23 C -0.063 4.063 24 C -0.033 4.033 25 N 0.026 4.974 26 O -0.149 6.149 27 O -0.159 6.159 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.264 0.736 39 H 0.048 0.952 40 H 0.125 0.875 41 H 0.156 0.844 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 -15.411 0.333 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 C -0.089 4.089 4 C -0.065 4.065 5 C 0.325 3.675 6 O -0.394 6.394 7 N -0.325 5.325 8 C -0.029 4.029 9 C -0.172 4.172 10 C -0.149 4.149 11 C 0.022 3.978 12 H 0.048 0.952 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.009 4.009 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.115 4.115 25 N 0.547 4.453 26 O -0.368 6.368 27 O -0.375 6.375 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.743 -14.130 -0.143 15.253 hybrid contribution 0.567 0.372 -0.032 0.679 sum -5.176 -13.758 -0.175 14.700 Atomic orbital electron populations 1.21082 0.88488 1.04160 1.04631 1.19702 0.97915 0.90055 0.95133 1.21199 0.92676 0.97735 0.97266 1.20728 0.94520 0.94939 0.96291 1.18107 0.81378 0.86497 0.81479 1.90859 1.66797 1.38874 1.42859 1.48502 1.23421 1.19903 1.40627 1.22087 0.99754 0.89868 0.91159 1.21955 1.01079 0.99085 0.95111 1.21644 0.97263 0.95310 1.00704 1.19042 0.96925 0.91863 0.89998 0.95155 1.21068 1.04955 0.99707 1.30372 0.92272 1.25059 0.95178 0.98478 0.95291 1.69874 1.21748 1.29741 1.30418 0.86577 0.80862 0.82061 0.78425 1.20601 1.21154 1.19895 1.22528 0.92459 0.83228 1.02648 1.21519 1.01452 0.89898 0.98636 1.20837 0.90436 1.00484 0.96444 1.21015 0.92418 0.83107 1.14959 1.43615 1.00571 1.02527 0.98545 1.94530 1.12856 1.89251 1.40139 1.94557 1.71622 1.30730 1.40617 0.88648 0.89868 0.90632 0.82586 0.90488 0.91422 0.92038 0.91950 0.92799 0.93043 0.92562 0.93385 0.85751 0.82616 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.93 36.00 0.32 -0.82 16 2 C -0.03 -0.29 5.87 -104.68 -0.61 -0.91 16 3 C -0.07 -0.85 9.29 -39.19 -0.36 -1.21 16 4 C -0.06 -0.82 5.19 -104.97 -0.54 -1.37 16 5 C 0.54 9.75 7.34 -12.32 -0.09 9.66 16 6 O -0.52 -11.63 16.32 5.33 0.09 -11.54 16 7 N -0.59 -10.63 2.97 -173.63 -0.51 -11.15 16 8 C 0.09 1.28 4.84 -3.71 -0.02 1.26 16 9 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 10 C -0.11 -2.04 5.10 -26.69 -0.14 -2.18 16 11 C 0.04 0.95 2.26 -91.43 -0.21 0.74 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -13.49 8.56 -34.44 -0.29 -13.79 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 16 N -0.88 -24.65 11.41 55.43 0.63 -24.02 16 17 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.11 2.48 5.44 -3.49 -0.02 2.46 16 22 C -0.10 -1.01 7.37 -39.18 -0.29 -1.30 16 23 C -0.06 -0.62 9.65 -39.64 -0.38 -1.00 16 24 C -0.03 -0.37 6.48 -79.86 -0.52 -0.89 16 25 N 0.03 0.32 4.09 34.01 0.14 0.46 16 26 O -0.15 -1.91 16.60 -29.46 -0.49 -2.40 16 27 O -0.16 -2.09 18.95 -29.46 -0.56 -2.65 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.63 8.10 -51.92 -0.42 0.20 16 30 H 0.07 0.72 6.33 -51.93 -0.33 0.39 16 31 H 0.16 1.85 8.05 -52.49 -0.42 1.43 16 32 H 0.08 0.85 4.63 -51.93 -0.24 0.61 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.12 3.29 5.14 -51.93 -0.27 3.03 16 41 H 0.16 1.38 6.37 -52.49 -0.33 1.05 16 42 H 0.15 1.17 8.01 -52.49 -0.42 0.75 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -30.19 346.65 -9.27 -39.46 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.35 Total: 0.98 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.41 Total: -9.88 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.26 Total: -34.71 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.96 Total: -16.58 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.19 -9.27 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.526 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds