Wall clock time and date at job start Tue Mar 31 2020 13:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37977 * 119.92997 * 2 1 4 4 C 1.39553 * 119.85152 * 179.97438 * 3 2 1 5 5 C 1.47849 * 120.14284 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00123 * 321.42359 * 5 4 3 7 7 N 1.34783 * 119.99915 * 141.42308 * 5 4 3 8 8 C 1.46924 * 120.62942 * 354.27942 * 7 5 4 9 9 C 1.53185 * 108.77357 * 233.58277 * 8 7 5 10 10 C 1.53044 * 109.31446 * 305.36424 * 9 8 7 11 11 C 1.53043 * 109.53400 * 61.36765 * 10 9 8 12 12 H 1.08997 * 109.50111 * 58.62099 * 11 10 9 13 13 C 1.50697 * 109.49249 * 178.68564 * 11 10 9 14 14 H 1.08000 * 120.00832 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99674 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00070 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99969 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46856 * 90.00059 * 17 15 13 19 19 H 1.48504 * 109.47096 * 210.00089 * 17 15 13 20 20 H 1.48500 * 109.47093 * 330.00011 * 17 15 13 21 21 C 1.46922 * 120.62836 * 173.99652 * 7 5 4 22 22 C 1.39599 * 119.71548 * 359.73476 * 4 3 2 23 23 C 1.37938 * 119.84910 * 0.51859 * 22 4 3 24 24 C 1.38344 * 119.92327 * 179.97438 * 2 1 3 25 25 N 1.48004 * 119.85388 * 359.97438 * 24 2 1 26 26 O 1.21804 * 120.00473 * 322.00574 * 25 24 2 27 27 O 1.21808 * 119.99817 * 142.01311 * 25 24 2 28 28 H 1.08996 * 109.47235 * 272.99608 * 1 2 3 29 29 H 1.09008 * 109.46658 * 32.99589 * 1 2 3 30 30 H 1.09003 * 109.46902 * 152.99182 * 1 2 3 31 31 H 1.07995 * 120.07252 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.58718 * 353.37104 * 8 7 5 33 33 H 1.08999 * 109.59013 * 113.65561 * 8 7 5 34 34 H 1.09000 * 109.50115 * 65.31941 * 9 8 7 35 35 H 1.09004 * 109.49851 * 185.41288 * 9 8 7 36 36 H 1.08997 * 109.45908 * 181.38343 * 10 9 8 37 37 H 1.09000 * 109.46168 * 301.35755 * 10 9 8 38 38 H 0.97001 * 119.99816 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.58676 * 246.20015 * 21 7 5 40 40 H 1.08993 * 109.59090 * 6.62633 * 21 7 5 41 41 H 1.07997 * 120.07752 * 180.27427 * 22 4 3 42 42 H 1.07999 * 119.92813 * 179.75451 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1938 0.0005 5 6 4.3351 2.4714 0.0000 6 8 3.9302 3.4103 -0.6572 7 7 5.4625 2.5949 0.7282 8 6 5.8971 1.5145 1.6240 9 6 6.1145 2.0935 3.0255 10 6 7.0891 3.2705 2.9413 11 6 6.4936 4.3655 2.0533 12 1 5.5380 4.6889 2.4658 13 6 7.4396 5.5372 1.9971 14 1 8.3723 5.5049 2.5406 15 6 7.1144 6.6506 1.2517 16 7 5.9784 6.6903 0.5903 17 14 8.2867 8.1034 1.1826 18 1 9.2286 7.9258 0.0484 19 1 7.5120 9.3559 0.9912 20 1 9.0512 8.1835 2.4531 21 6 6.2835 3.8099 0.6365 22 6 4.2812 -0.0195 0.0067 23 6 3.5809 -1.2079 0.0014 24 6 2.1971 -1.1990 0.0005 25 7 1.4521 -2.4779 0.0017 26 8 0.4275 -2.5853 0.6515 27 8 1.8637 -3.4231 -0.6471 28 1 -0.3633 0.0537 1.0262 29 1 -0.3633 0.8620 -0.5597 30 1 -0.3633 -0.9156 -0.4667 31 1 1.6555 2.1310 0.0004 32 1 5.1298 0.7413 1.6631 33 1 6.8290 1.0861 1.2548 34 1 5.1622 2.4379 3.4286 35 1 6.5288 1.3240 3.6769 36 1 7.2646 3.6688 3.9406 37 1 8.0330 2.9307 2.5149 38 1 5.7498 7.4735 0.0656 39 1 7.2476 3.5666 0.1898 40 1 5.7713 4.5516 0.0239 41 1 5.3612 -0.0278 0.0116 42 1 4.1137 -2.1473 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397590940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:15 Heat of formation + Delta-G solvation = -28.036060 kcal Electronic energy + Delta-G solvation = -26715.927078 eV Core-core repulsion = 22856.532617 eV Total energy + Delta-G solvation = -3859.394460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.39841 -41.76786 -39.98882 -38.40686 -37.74190 -35.56401 -34.41036 -33.47585 -33.06685 -31.54229 -29.01574 -28.04052 -26.88039 -26.18168 -24.04807 -23.63889 -23.28973 -21.61732 -20.30698 -20.15429 -19.84880 -18.83489 -18.60986 -17.94035 -17.32952 -16.71480 -16.55806 -15.93961 -15.89286 -15.48514 -15.23554 -15.01307 -14.71081 -14.54708 -14.47157 -14.15402 -13.90595 -13.60783 -13.49001 -13.38269 -12.90800 -12.76357 -12.72197 -12.60060 -12.34698 -12.29227 -12.23905 -12.09529 -11.87326 -11.66089 -11.28207 -10.99083 -10.87495 -10.66961 -10.54610 -10.19322 -9.52787 -8.12977 -6.29514 -1.32871 -0.21848 -0.15308 0.24327 1.39627 1.41256 1.44609 1.51279 1.90528 2.22787 2.40819 3.14081 3.19334 3.22492 3.23652 3.66164 3.68117 3.93618 4.03067 4.12636 4.19709 4.30619 4.43963 4.51341 4.54610 4.54878 4.69861 4.73541 4.78016 4.80862 4.89047 4.94304 4.98312 5.06759 5.20266 5.23599 5.31327 5.34791 5.48317 5.58831 5.87472 5.96278 6.30136 6.43012 6.47320 6.83036 7.06811 7.41003 8.90317 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027135 B = 0.003029 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.612113 B = 9242.746354 C = 9782.871942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 C -0.075 4.075 4 C -0.073 4.073 5 C 0.536 3.464 6 O -0.577 6.577 7 N -0.595 5.595 8 C 0.089 3.911 9 C -0.129 4.129 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.014 1.014 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.914 5.914 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.124 3.876 22 C -0.083 4.083 23 C -0.047 4.047 24 C -0.039 4.039 25 N 0.027 4.973 26 O -0.154 6.154 27 O -0.168 6.168 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.181 0.819 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -18.276 1.185 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 C -0.094 4.094 4 C -0.077 4.077 5 C 0.324 3.676 6 O -0.457 6.457 7 N -0.325 5.325 8 C -0.032 4.032 9 C -0.167 4.167 10 C -0.144 4.144 11 C 0.019 3.981 12 H 0.004 0.996 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.553 5.553 17 Si 0.781 3.219 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.188 1.188 21 C 0.002 3.998 22 C -0.102 4.102 23 C -0.065 4.065 24 C -0.121 4.121 25 N 0.547 4.453 26 O -0.373 6.373 27 O -0.383 6.383 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.198 0.802 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.630 -17.050 0.740 17.683 hybrid contribution 0.182 1.235 -0.269 1.277 sum -4.449 -15.815 0.471 16.436 Atomic orbital electron populations 1.21155 0.87239 1.04513 1.05524 1.19782 0.98827 0.89418 0.94356 1.21144 0.92393 0.98125 0.97733 1.20341 0.94635 0.93561 0.99147 1.18766 0.81060 0.87525 0.80212 1.90824 1.68211 1.41470 1.45226 1.48467 1.23067 1.19647 1.41361 1.22491 1.02218 0.88959 0.89540 1.21935 0.99498 0.98583 0.96641 1.21530 0.98425 0.95222 0.99194 1.18977 0.94555 0.93148 0.91407 0.99616 1.21517 1.05331 1.00831 1.29677 0.91955 1.25861 0.96543 1.01274 0.95150 1.70073 1.23673 1.30115 1.31434 0.85599 0.78893 0.78644 0.78797 1.19963 1.21537 1.18835 1.21903 0.92373 0.84386 1.01122 1.21662 1.02461 0.88584 0.97481 1.21124 0.89718 1.01300 0.94400 1.21225 0.93148 0.82601 1.15120 1.43734 1.00514 1.02716 0.98292 1.94533 1.13111 1.89409 1.40216 1.94558 1.71719 1.31188 1.40833 0.87516 0.88689 0.90976 0.83241 0.87259 0.88372 0.93461 0.87540 0.93139 0.91904 0.93138 0.93338 0.90411 0.80203 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.93 71.24 0.64 -1.45 16 2 C -0.02 -0.45 5.87 -19.90 -0.12 -0.57 16 3 C -0.07 -1.76 9.29 22.53 0.21 -1.55 16 4 C -0.07 -1.88 5.19 -20.09 -0.10 -1.99 16 5 C 0.54 19.74 7.34 86.79 0.64 20.38 16 6 O -0.58 -27.58 16.32 -3.86 -0.06 -27.64 16 7 N -0.60 -21.23 2.97 -821.50 -2.44 -23.67 16 8 C 0.09 2.11 4.84 86.36 0.42 2.53 16 9 C -0.13 -3.38 6.08 30.67 0.19 -3.19 16 10 C -0.11 -3.76 5.10 30.62 0.16 -3.60 16 11 C 0.04 1.83 2.26 -11.32 -0.03 1.80 16 12 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 13 C -0.54 -28.29 8.56 25.60 0.22 -28.07 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 15 C 0.01 0.62 5.30 84.66 0.45 1.06 16 16 N -0.91 -53.96 11.41 21.45 0.24 -53.72 16 17 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 C 0.12 5.73 5.44 86.51 0.47 6.20 16 22 C -0.08 -1.45 7.37 22.53 0.17 -1.29 16 23 C -0.05 -0.73 9.65 22.23 0.21 -0.51 16 24 C -0.04 -0.77 6.48 36.44 0.24 -0.53 16 25 N 0.03 0.61 4.09 -46.33 -0.19 0.42 16 26 O -0.15 -3.61 16.60 18.88 0.31 -3.29 16 27 O -0.17 -3.98 18.95 18.88 0.36 -3.62 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.32 8.10 -2.38 -0.02 1.30 16 30 H 0.07 1.25 6.33 -2.39 -0.02 1.23 16 31 H 0.15 3.67 8.05 -2.91 -0.02 3.65 16 32 H 0.11 1.94 4.63 -2.39 -0.01 1.93 16 33 H 0.10 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.08 4.39 5.14 -2.39 -0.01 4.38 16 41 H 0.18 2.29 6.37 -2.91 -0.02 2.28 16 42 H 0.18 1.82 8.01 -2.91 -0.02 1.79 16 Total: -1.00 -71.12 346.65 5.05 -66.06 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.05 Total: 11.20 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 3.75 Total: -10.79 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.38 Total: -76.97 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: 0.61 Total: -34.56 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -71.12 5.05 -66.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.027 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds