Wall clock time and date at job start Tue Mar 31 2020 13:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38376 * 119.92350 * 2 1 4 4 C 1.38344 * 120.29130 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14183 * 359.97438 * 4 3 2 6 6 C 1.39553 * 119.85225 * 0.02562 * 5 4 3 7 7 C 1.47851 * 120.14194 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99502 * 126.05902 * 7 6 5 9 9 N 1.34773 * 120.00306 * 306.06273 * 7 6 5 10 10 C 1.46922 * 120.63142 * 174.23004 * 9 7 6 11 11 C 1.53194 * 108.77783 * 126.43064 * 10 9 7 12 12 C 1.53046 * 109.30973 * 54.63280 * 11 10 9 13 13 C 1.53035 * 109.53794 * 298.63773 * 12 11 10 14 14 H 1.08999 * 109.49405 * 301.37629 * 13 12 11 15 15 C 1.50703 * 109.49555 * 181.31686 * 13 12 11 16 16 H 1.08004 * 120.00319 * 0.06326 * 15 13 12 17 17 C 1.37882 * 119.99974 * 179.78804 * 15 13 12 18 18 N 1.31508 * 119.99723 * 0.27140 * 17 15 13 19 19 Si 1.86797 * 120.00012 * 180.27604 * 17 15 13 20 20 H 1.48499 * 109.47137 * 89.99823 * 19 17 15 21 21 H 1.48496 * 109.47207 * 209.99684 * 19 17 15 22 22 H 1.48504 * 109.47175 * 330.00305 * 19 17 15 23 23 C 1.46935 * 120.60418 * 354.25063 * 9 7 6 24 24 C 1.37939 * 119.92654 * 180.26244 * 2 1 3 25 25 N 1.48009 * 120.07359 * 359.97438 * 24 2 1 26 26 O 1.21799 * 120.00307 * 270.25687 * 25 24 2 27 27 O 1.21804 * 119.99607 * 90.26054 * 25 24 2 28 28 H 1.09001 * 109.47324 * 90.00012 * 1 2 3 29 29 H 1.08997 * 109.46943 * 209.99873 * 1 2 3 30 30 H 1.09001 * 109.47211 * 329.99843 * 1 2 3 31 31 H 1.08005 * 119.86129 * 0.02562 * 3 2 1 32 32 H 1.07993 * 119.93038 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.06985 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.58725 * 6.64490 * 10 9 7 35 35 H 1.09006 * 109.58503 * 246.21835 * 10 9 7 36 36 H 1.08993 * 109.49665 * 294.68396 * 11 10 9 37 37 H 1.09000 * 109.49743 * 174.57817 * 11 10 9 38 38 H 1.08996 * 109.46040 * 178.61237 * 12 11 10 39 39 H 1.09005 * 109.45618 * 58.65802 * 12 11 10 40 40 H 0.97006 * 119.99540 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.56357 * 113.76618 * 23 9 7 42 42 H 1.09009 * 109.61550 * 353.33546 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0194 -0.0005 6 6 3.5911 -1.1936 -0.0005 7 6 4.3353 -2.4711 -0.0011 8 8 4.1060 -3.3083 0.8498 9 7 5.2678 -2.7075 -0.9450 10 6 6.1031 -3.9147 -0.8864 11 6 5.9961 -4.6538 -2.2240 12 6 6.3554 -3.6954 -3.3619 13 6 5.3691 -2.5254 -3.3762 14 1 4.3554 -2.9057 -3.5021 15 6 5.7041 -1.5992 -4.5169 16 1 6.5366 -1.8228 -5.1676 17 6 4.9443 -0.4691 -4.7332 18 7 3.9307 -0.1967 -3.9409 19 14 5.3548 0.6749 -6.1517 20 1 4.6128 0.2458 -7.3643 21 1 4.9636 2.0629 -5.7974 22 1 6.8144 0.6253 -6.4212 23 6 5.4683 -1.7620 -2.0518 24 6 2.1952 -1.1955 -0.0055 25 7 1.4551 -2.4772 -0.0108 26 8 1.1469 -3.0069 1.0418 27 8 1.1544 -3.0024 -1.0678 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6538 2.1326 0.0004 32 1 4.1135 2.1475 -0.0001 33 1 5.3612 0.0277 -0.0014 34 1 5.7535 -4.5622 -0.0822 35 1 7.1406 -3.6328 -0.7066 36 1 4.9765 -5.0140 -2.3601 37 1 6.6848 -5.4987 -2.2289 38 1 6.3040 -4.2254 -4.3129 39 1 7.3664 -3.3164 -3.2118 40 1 3.3964 0.5985 -4.0930 41 1 6.4537 -1.3042 -1.9667 42 1 4.6999 -0.9895 -2.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397627820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:19 Heat of formation + Delta-G solvation = -33.466181 kcal Electronic energy + Delta-G solvation = -28299.899742 eV Core-core repulsion = 24440.269814 eV Total energy + Delta-G solvation = -3859.629928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.44778 -41.63907 -40.03389 -38.54980 -37.68583 -35.16772 -34.73255 -33.64130 -32.94014 -31.61519 -28.97379 -27.42308 -27.06505 -26.55649 -24.61493 -23.38388 -23.04323 -21.66641 -20.51682 -19.99644 -19.85730 -18.76016 -18.61055 -18.11362 -17.38528 -16.68148 -16.50855 -16.34605 -15.81546 -15.38841 -15.31964 -15.08386 -14.80602 -14.64020 -14.36298 -13.97957 -13.69904 -13.66510 -13.32286 -13.24612 -12.91533 -12.89310 -12.83230 -12.73958 -12.37617 -12.33940 -12.24899 -12.22396 -11.93790 -11.76728 -11.45596 -10.97264 -10.94198 -10.54662 -10.51544 -10.05840 -9.66442 -8.09699 -6.23431 -0.72478 -0.56935 -0.20857 0.27825 1.21988 1.44215 1.48203 1.55863 1.84116 2.28585 2.44943 3.05095 3.21616 3.26889 3.59403 3.77999 3.92334 3.97874 4.02149 4.03856 4.15375 4.22710 4.41778 4.46264 4.52857 4.57380 4.68837 4.73904 4.76098 4.83702 4.95284 4.97221 5.04910 5.05978 5.08155 5.13704 5.18212 5.45236 5.51406 5.55354 5.79256 5.93475 6.15648 6.30130 6.35282 6.77157 6.86345 7.45001 8.95462 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.006612 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.298114 B = 4233.729182 C = 5617.888039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.051 4.051 3 C -0.077 4.077 4 C -0.065 4.065 5 C -0.077 4.077 6 C -0.092 4.092 7 C 0.533 3.467 8 O -0.578 6.578 9 N -0.590 5.590 10 C 0.106 3.894 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.035 3.965 14 H -0.019 1.019 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.904 5.904 19 Si 0.952 3.048 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.268 1.268 23 C 0.110 3.890 24 C -0.018 4.018 25 N 0.027 4.973 26 O -0.125 6.125 27 O -0.195 6.195 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.129 0.871 31 H 0.196 0.804 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.264 0.736 41 H 0.061 0.939 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 7.661 7.861 10.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.095 4.095 4 C -0.083 4.083 5 C -0.096 4.096 6 C -0.096 4.096 7 C 0.321 3.679 8 O -0.460 6.460 9 N -0.319 5.319 10 C -0.015 4.015 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.016 3.984 14 H -0.001 1.001 15 C -0.573 4.573 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.778 3.222 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.011 4.011 24 C -0.099 4.099 25 N 0.554 4.446 26 O -0.357 6.357 27 O -0.406 6.406 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.213 0.787 32 H 0.207 0.793 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.456 8.004 8.200 11.468 hybrid contribution -0.273 -0.526 -1.040 1.197 sum 0.184 7.478 7.160 10.355 Atomic orbital electron populations 1.21077 0.87755 1.05183 1.04273 1.19997 0.98535 0.89770 0.96947 1.21731 0.94511 0.97110 0.96148 1.21911 0.94513 0.98995 0.92859 1.21519 1.01554 0.89811 0.96707 1.19604 0.90432 0.96256 1.03283 1.18717 0.80618 0.86613 0.82003 1.90776 1.67606 1.47448 1.40153 1.48558 1.34435 1.24314 1.24632 1.21826 0.95064 0.85896 0.98730 1.21896 1.01289 0.98916 0.94268 1.21543 0.99552 0.96086 0.97097 1.18918 0.93497 0.93218 0.92760 1.00129 1.21342 1.14950 1.07772 1.13225 0.92336 1.25650 0.94507 0.99030 0.98307 1.69965 1.18406 1.27106 1.38696 0.85659 0.78565 0.78408 0.79572 1.21417 1.20219 1.19293 1.22396 1.02126 0.92324 0.84262 1.20941 0.91130 0.83080 1.14760 1.43831 0.98471 1.02593 0.99688 1.94459 1.55132 1.64981 1.21178 1.94582 1.58804 1.66451 1.20755 0.89482 0.93358 0.85248 0.78667 0.79265 0.82657 0.90429 0.88638 0.94588 0.87935 0.92931 0.91413 0.92647 0.92069 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.76 71.24 0.70 -2.24 16 2 C -0.05 -1.48 5.87 -19.90 -0.12 -1.60 16 3 C -0.08 -1.59 9.69 22.33 0.22 -1.37 16 4 C -0.07 -1.41 10.03 22.23 0.22 -1.18 16 5 C -0.08 -2.30 7.78 22.53 0.18 -2.13 16 6 C -0.09 -3.59 4.60 -20.09 -0.09 -3.69 16 7 C 0.53 23.58 6.80 86.79 0.59 24.17 16 8 O -0.58 -28.39 15.87 -3.88 -0.06 -28.45 16 9 N -0.59 -24.47 2.97 -822.28 -2.44 -26.92 16 10 C 0.11 3.77 6.44 86.36 0.56 4.33 16 11 C -0.13 -4.39 6.08 30.67 0.19 -4.20 16 12 C -0.11 -4.12 5.11 30.62 0.16 -3.96 16 13 C 0.04 1.69 2.25 -11.46 -0.03 1.67 16 14 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 15 C -0.53 -27.05 8.56 25.60 0.22 -26.83 16 16 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.03 1.28 5.31 84.66 0.45 1.73 16 18 N -0.90 -46.37 11.40 21.45 0.24 -46.12 16 19 Si 0.95 39.65 29.54 68.60 2.03 41.68 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C 0.11 4.77 4.54 86.36 0.39 5.16 16 24 C -0.02 -0.72 6.11 36.63 0.22 -0.49 16 25 N 0.03 1.20 2.42 -45.86 -0.11 1.09 16 26 O -0.13 -5.58 18.87 19.13 0.36 -5.22 16 27 O -0.19 -9.52 19.25 18.88 0.36 -9.16 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.30 7.31 -2.39 -0.02 1.28 16 30 H 0.13 1.80 8.08 -2.39 -0.02 1.78 16 31 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.16 4.16 7.76 -2.91 -0.02 4.14 16 34 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 35 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.26 12.83 8.31 -92.70 -0.77 12.06 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.11 5.02 3.52 -2.38 -0.01 5.01 16 Total: -1.00 -72.06 351.54 5.27 -66.79 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.04 Total: 16.96 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 3.85 Total: -10.65 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -2.31 Total: -71.95 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: 0.66 Total: -42.83 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -72.06 5.27 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397627820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.325 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds