Wall clock time and date at job start Tue Mar 31 2020 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38379 * 119.93108 * 2 1 4 4 C 1.38336 * 120.29818 * 179.97438 * 3 2 1 5 5 C 1.37981 * 120.14166 * 0.04895 * 4 3 2 6 6 C 1.39557 * 119.85336 * 359.92765 * 5 4 3 7 7 C 1.47844 * 120.14634 * 180.31656 * 6 5 4 8 8 O 1.21550 * 119.99904 * 125.56374 * 7 6 5 9 9 N 1.34783 * 120.00148 * 305.57141 * 7 6 5 10 10 C 1.46925 * 120.63014 * 4.17248 * 9 7 6 11 11 C 1.53188 * 108.77597 * 233.58696 * 10 9 7 12 12 C 1.53048 * 109.31186 * 305.36549 * 11 10 9 13 13 C 1.53041 * 109.53566 * 61.36306 * 12 11 10 14 14 H 1.08997 * 109.49865 * 58.62351 * 13 12 11 15 15 C 1.50710 * 109.49364 * 178.68365 * 13 12 11 16 16 H 1.07999 * 120.00003 * 0.02562 * 15 13 12 17 17 C 1.37873 * 119.99564 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00495 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 119.99622 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46789 * 90.00235 * 19 17 15 21 21 H 1.48498 * 109.46798 * 209.99941 * 19 17 15 22 22 H 1.48497 * 109.46780 * 329.99972 * 19 17 15 23 23 C 1.46921 * 120.63012 * 183.89101 * 9 7 6 24 24 C 1.37944 * 119.92901 * 179.97438 * 2 1 3 25 25 N 1.48015 * 120.06828 * 0.02562 * 24 2 1 26 26 O 1.21792 * 120.00502 * 269.97754 * 25 24 2 27 27 O 1.21811 * 119.99741 * 89.98261 * 25 24 2 28 28 H 1.08991 * 109.47263 * 270.02560 * 1 2 3 29 29 H 1.08998 * 109.46920 * 30.02290 * 1 2 3 30 30 H 1.08997 * 109.46860 * 150.01680 * 1 2 3 31 31 H 1.08005 * 119.85172 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.93245 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.07208 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.58639 * 353.37278 * 10 9 7 35 35 H 1.08999 * 109.58826 * 113.65582 * 10 9 7 36 36 H 1.08996 * 109.49868 * 65.31027 * 11 10 9 37 37 H 1.08997 * 109.50171 * 185.41465 * 11 10 9 38 38 H 1.08995 * 109.45995 * 181.38629 * 12 11 10 39 39 H 1.08996 * 109.45457 * 301.35756 * 12 11 10 40 40 H 0.96993 * 120.00021 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.58995 * 246.20291 * 23 9 7 42 42 H 1.09002 * 109.58702 * 6.62887 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0005 5 6 4.2812 0.0193 0.0001 6 6 3.5911 -1.1937 0.0006 7 6 4.3351 -2.4712 0.0071 8 8 4.1084 -3.3022 0.8648 9 7 5.2649 -2.7145 -0.9379 10 6 5.6153 -1.6850 -1.9259 11 6 5.4705 -2.2798 -3.3301 12 6 6.3092 -3.5563 -3.4280 13 6 5.7993 -4.5827 -2.4138 14 1 4.7494 -4.7987 -2.6112 15 6 6.6049 -5.8508 -2.5332 16 1 7.4013 -5.9182 -3.2596 17 6 6.3257 -6.9244 -1.7145 18 7 5.3561 -6.8422 -0.8297 19 14 7.3246 -8.4961 -1.8621 20 1 8.4963 -8.4250 -0.9526 21 1 6.4780 -9.6575 -1.4888 22 1 7.7935 -8.6549 -3.2621 23 6 5.9518 -4.0120 -0.9957 24 6 2.1952 -1.1955 0.0005 25 7 1.4551 -2.4773 0.0005 26 8 1.1505 -3.0047 1.0552 27 8 1.1507 -3.0048 -1.0544 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6539 2.1325 -0.0004 32 1 4.1136 2.1474 0.0009 33 1 5.3613 0.0275 0.0001 34 1 4.9443 -0.8327 -1.8191 35 1 6.6442 -1.3620 -1.7678 36 1 4.4236 -2.5172 -3.5186 37 1 5.8191 -1.5580 -4.0687 38 1 6.2275 -3.9682 -4.4339 39 1 7.3522 -3.3226 -3.2149 40 1 5.1596 -7.5976 -0.2540 41 1 7.0085 -3.8767 -0.7649 42 1 5.5029 -4.6955 -0.2750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397627824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:25 Heat of formation + Delta-G solvation = -11.003732 kcal Electronic energy + Delta-G solvation = -27784.665731 eV Core-core repulsion = 23926.009848 eV Total energy + Delta-G solvation = -3858.655883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05933 -40.28930 -38.84865 -36.84620 -36.15280 -33.98457 -33.15305 -32.17362 -31.75918 -29.86066 -28.04405 -26.38510 -25.22358 -25.07869 -23.07890 -22.16045 -21.79744 -20.13128 -19.14294 -18.50523 -18.44066 -17.48072 -17.14793 -16.16508 -15.96045 -15.51642 -15.32223 -14.68004 -14.36678 -14.28765 -14.20076 -13.76659 -13.56707 -13.17056 -12.75022 -12.69220 -12.63108 -12.41884 -12.20796 -12.03080 -11.92478 -11.32732 -11.05022 -10.93397 -10.84431 -10.75026 -10.57010 -10.46701 -10.28163 -9.98784 -9.80240 -9.62066 -9.28732 -9.14138 -8.97814 -8.46254 -7.93836 -5.99454 -4.09396 0.31401 0.52733 0.80370 1.52031 2.68373 3.01448 3.31511 3.37853 3.40257 3.41963 4.07081 4.17534 4.36237 4.43579 4.57914 4.62732 4.81467 4.95779 5.09075 5.12710 5.17749 5.30211 5.37283 5.51443 5.54396 5.57700 5.63749 5.74164 5.85876 6.04400 6.08211 6.23289 6.50897 6.56409 6.57791 6.75928 6.90302 7.00483 7.09451 7.55607 7.81070 7.83841 7.90934 8.05426 8.32528 8.50362 8.94616 9.56794 11.06075 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.004381 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.894318 B = 6390.013047 C = 7186.886691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 C -0.101 4.101 4 C -0.085 4.085 5 C -0.090 4.090 6 C -0.062 4.062 7 C 0.529 3.471 8 O -0.510 6.510 9 N -0.587 5.587 10 C 0.098 3.902 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.041 3.959 14 H 0.032 0.968 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.111 3.889 24 C 0.011 3.989 25 N 0.018 4.982 26 O -0.113 6.113 27 O -0.144 6.144 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.265 0.735 41 H 0.048 0.952 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 21.210 0.002 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.045 4.045 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.109 4.109 6 C -0.066 4.066 7 C 0.313 3.687 8 O -0.386 6.386 9 N -0.319 5.319 10 C -0.025 4.025 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.050 0.950 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.008 4.008 24 C -0.070 4.070 25 N 0.550 4.450 26 O -0.342 6.342 27 O -0.363 6.363 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.599 21.286 0.549 21.784 hybrid contribution 0.445 -1.128 -0.078 1.215 sum -4.154 20.157 0.472 20.586 Atomic orbital electron populations 1.21017 0.89158 1.04500 1.04060 1.19568 0.97347 0.90234 0.97304 1.21149 0.94333 0.96739 0.99716 1.21402 0.94115 0.98564 0.96214 1.21368 1.01125 0.89936 0.98440 1.20039 0.90715 0.96903 0.98948 1.18175 0.81417 0.85579 0.83528 1.90936 1.65685 1.45671 1.36274 1.48518 1.38017 1.17189 1.28152 1.21944 1.00309 0.90615 0.89643 1.21953 1.01642 0.98844 0.94810 1.21633 0.98041 0.94415 1.00720 1.19055 0.97615 0.92289 0.88898 0.95033 1.21040 1.17985 0.97132 1.20071 0.92252 1.25072 0.94996 0.98736 0.95197 1.69877 1.28962 1.31531 1.21157 0.86572 0.79972 0.83029 0.78323 1.20659 1.21108 1.19897 1.22574 0.94434 0.79904 1.03892 1.20735 0.91124 0.84180 1.10928 1.43354 0.99351 1.01635 1.00673 1.94571 1.55089 1.63921 1.20582 1.94592 1.56690 1.64497 1.20545 0.89325 0.89378 0.91048 0.83524 0.83599 0.83239 0.90922 0.91355 0.91908 0.91943 0.92714 0.93095 0.92453 0.93351 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.77 36.00 0.35 -0.86 16 2 C -0.04 -0.50 5.87 -104.68 -0.61 -1.11 16 3 C -0.10 -0.79 9.69 -39.49 -0.38 -1.18 16 4 C -0.09 -0.65 10.03 -39.64 -0.40 -1.04 16 5 C -0.09 -0.99 7.44 -39.18 -0.29 -1.28 16 6 C -0.06 -1.00 4.88 -104.97 -0.51 -1.51 16 7 C 0.53 11.20 6.83 -12.33 -0.08 11.11 16 8 O -0.51 -13.22 15.87 5.32 0.08 -13.13 16 9 N -0.59 -11.94 2.97 -173.62 -0.51 -12.46 16 10 C 0.10 1.50 5.53 -3.71 -0.02 1.48 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.11 -2.18 5.10 -26.69 -0.14 -2.32 16 13 C 0.04 1.01 2.26 -91.42 -0.21 0.81 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -26.23 11.41 55.43 0.63 -25.60 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.11 2.72 5.42 -3.49 -0.02 2.70 16 24 C 0.01 0.19 6.11 -79.55 -0.49 -0.30 16 25 N 0.02 0.36 2.41 34.16 0.08 0.44 16 26 O -0.11 -2.39 19.00 -29.74 -0.57 -2.95 16 27 O -0.14 -3.04 19.12 -29.46 -0.56 -3.60 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 31 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.15 1.38 7.37 -52.48 -0.39 0.99 16 34 H 0.07 0.92 4.74 -51.93 -0.25 0.67 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 42 H 0.12 3.58 5.17 -51.93 -0.27 3.31 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -35.09 350.50 -9.40 -44.50 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.47 Total: -0.24 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.35 Total: -8.72 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.20 Total: -37.61 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.04 Total: -19.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.09 -9.40 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397627824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.494 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds