Wall clock time and date at job start Tue Mar 31 2020 13:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38379 * 119.93108 * 2 1 4 4 C 1.38336 * 120.29818 * 179.97438 * 3 2 1 5 5 C 1.37981 * 120.14166 * 0.04895 * 4 3 2 6 6 C 1.39557 * 119.85336 * 359.92765 * 5 4 3 7 7 C 1.47844 * 120.14634 * 180.31656 * 6 5 4 8 8 O 1.21550 * 119.99904 * 125.56374 * 7 6 5 9 9 N 1.34783 * 120.00148 * 305.57141 * 7 6 5 10 10 C 1.46925 * 120.63014 * 4.17248 * 9 7 6 11 11 C 1.53188 * 108.77597 * 233.58696 * 10 9 7 12 12 C 1.53048 * 109.31186 * 305.36549 * 11 10 9 13 13 C 1.53041 * 109.53566 * 61.36306 * 12 11 10 14 14 H 1.08997 * 109.49865 * 58.62351 * 13 12 11 15 15 C 1.50710 * 109.49364 * 178.68365 * 13 12 11 16 16 H 1.07999 * 120.00003 * 0.02562 * 15 13 12 17 17 C 1.37873 * 119.99564 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00495 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 119.99622 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46789 * 90.00235 * 19 17 15 21 21 H 1.48498 * 109.46798 * 209.99941 * 19 17 15 22 22 H 1.48497 * 109.46780 * 329.99972 * 19 17 15 23 23 C 1.46921 * 120.63012 * 183.89101 * 9 7 6 24 24 C 1.37944 * 119.92901 * 179.97438 * 2 1 3 25 25 N 1.48015 * 120.06828 * 0.02562 * 24 2 1 26 26 O 1.21792 * 120.00502 * 269.97754 * 25 24 2 27 27 O 1.21811 * 119.99741 * 89.98261 * 25 24 2 28 28 H 1.08991 * 109.47263 * 270.02560 * 1 2 3 29 29 H 1.08998 * 109.46920 * 30.02290 * 1 2 3 30 30 H 1.08997 * 109.46860 * 150.01680 * 1 2 3 31 31 H 1.08005 * 119.85172 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.93245 * 180.02562 * 4 3 2 33 33 H 1.08006 * 120.07208 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.58639 * 353.37278 * 10 9 7 35 35 H 1.08999 * 109.58826 * 113.65582 * 10 9 7 36 36 H 1.08996 * 109.49868 * 65.31027 * 11 10 9 37 37 H 1.08997 * 109.50171 * 185.41465 * 11 10 9 38 38 H 1.08995 * 109.45995 * 181.38629 * 12 11 10 39 39 H 1.08996 * 109.45457 * 301.35756 * 12 11 10 40 40 H 0.96993 * 120.00021 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.58995 * 246.20291 * 23 9 7 42 42 H 1.09002 * 109.58702 * 6.62887 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0005 5 6 4.2812 0.0193 0.0001 6 6 3.5911 -1.1937 0.0006 7 6 4.3351 -2.4712 0.0071 8 8 4.1084 -3.3022 0.8648 9 7 5.2649 -2.7145 -0.9379 10 6 5.6153 -1.6850 -1.9259 11 6 5.4705 -2.2798 -3.3301 12 6 6.3092 -3.5563 -3.4280 13 6 5.7993 -4.5827 -2.4138 14 1 4.7494 -4.7987 -2.6112 15 6 6.6049 -5.8508 -2.5332 16 1 7.4013 -5.9182 -3.2596 17 6 6.3257 -6.9244 -1.7145 18 7 5.3561 -6.8422 -0.8297 19 14 7.3246 -8.4961 -1.8621 20 1 8.4963 -8.4250 -0.9526 21 1 6.4780 -9.6575 -1.4888 22 1 7.7935 -8.6549 -3.2621 23 6 5.9518 -4.0120 -0.9957 24 6 2.1952 -1.1955 0.0005 25 7 1.4551 -2.4773 0.0005 26 8 1.1505 -3.0047 1.0552 27 8 1.1507 -3.0048 -1.0544 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6539 2.1325 -0.0004 32 1 4.1136 2.1474 0.0009 33 1 5.3613 0.0275 0.0001 34 1 4.9443 -0.8327 -1.8191 35 1 6.6442 -1.3620 -1.7678 36 1 4.4236 -2.5172 -3.5186 37 1 5.8191 -1.5580 -4.0687 38 1 6.2275 -3.9682 -4.4339 39 1 7.3522 -3.3226 -3.2149 40 1 5.1596 -7.5976 -0.2540 41 1 7.0085 -3.8767 -0.7649 42 1 5.5029 -4.6955 -0.2750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397627824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:24 Heat of formation + Delta-G solvation = -33.944012 kcal Electronic energy + Delta-G solvation = -27785.660496 eV Core-core repulsion = 23926.009848 eV Total energy + Delta-G solvation = -3859.650648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.45397 -41.65620 -40.05803 -38.52553 -37.71130 -35.56518 -34.45972 -33.57529 -33.04675 -31.62375 -29.09091 -27.51786 -27.13589 -26.58715 -24.35395 -23.63654 -23.00590 -21.67738 -20.53979 -19.97036 -19.86503 -18.78809 -18.72544 -18.06157 -17.34702 -16.69296 -16.57267 -16.34408 -15.79535 -15.42192 -15.28664 -15.10176 -14.87945 -14.61214 -14.42754 -13.99095 -13.70716 -13.62149 -13.42298 -13.26571 -12.96572 -12.93259 -12.86187 -12.71397 -12.40099 -12.38068 -12.29940 -12.26537 -11.92712 -11.75370 -11.37951 -11.06249 -10.90533 -10.60727 -10.60080 -10.14489 -9.64152 -8.15986 -6.35083 -0.81271 -0.65966 -0.29628 0.27112 1.27995 1.37393 1.39015 1.50059 1.85141 2.18602 2.38196 3.03615 3.13560 3.19549 3.54863 3.70877 3.86299 3.91434 4.01788 4.06166 4.11804 4.25237 4.40862 4.46581 4.52263 4.62163 4.66658 4.72511 4.75629 4.84429 4.96220 4.99120 5.00005 5.04358 5.13973 5.16734 5.24104 5.39831 5.47716 5.52627 5.79352 5.89327 6.18542 6.23002 6.32885 6.77779 6.91045 7.36559 8.87742 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.004381 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.894318 B = 6390.013047 C = 7186.886691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C -0.072 4.072 4 C -0.054 4.054 5 C -0.083 4.083 6 C -0.096 4.096 7 C 0.519 3.481 8 O -0.581 6.581 9 N -0.591 5.591 10 C 0.092 3.908 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.038 3.962 14 H -0.024 1.024 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.920 5.920 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.259 1.259 23 C 0.124 3.876 24 C -0.025 4.025 25 N 0.023 4.977 26 O -0.150 6.150 27 O -0.181 6.181 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.038 0.962 31 H 0.203 0.797 32 H 0.207 0.793 33 H 0.172 0.828 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.114 0.886 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.259 0.741 41 H 0.051 0.949 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 27.152 -1.390 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.047 4.047 3 C -0.090 4.090 4 C -0.071 4.071 5 C -0.101 4.101 6 C -0.101 4.101 7 C 0.306 3.694 8 O -0.462 6.462 9 N -0.321 5.321 10 C -0.029 4.029 11 C -0.166 4.166 12 C -0.142 4.142 13 C 0.019 3.981 14 H -0.006 1.006 15 C -0.574 4.574 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.559 5.559 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.182 1.182 23 C 0.002 3.998 24 C -0.106 4.106 25 N 0.549 4.451 26 O -0.376 6.376 27 O -0.397 6.397 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.057 0.943 31 H 0.220 0.780 32 H 0.223 0.777 33 H 0.190 0.810 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.057 0.943 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.922 27.262 -0.896 27.433 hybrid contribution -0.093 -2.805 0.342 2.828 sum -3.016 24.457 -0.554 24.648 Atomic orbital electron populations 1.21131 0.88008 1.05017 1.04685 1.20078 0.98438 0.89562 0.96662 1.21883 0.94847 0.96731 0.95576 1.22088 0.94024 0.99070 0.91913 1.21764 1.02302 0.88876 0.97185 1.19742 0.90255 0.95998 1.04077 1.19056 0.80989 0.87019 0.82352 1.90878 1.67514 1.48742 1.39049 1.48527 1.37615 1.16752 1.29164 1.22389 1.03113 0.89968 0.87384 1.21934 0.99613 0.98116 0.96936 1.21519 0.99363 0.94706 0.98591 1.18982 0.94237 0.93791 0.91061 1.00601 1.21522 1.17959 0.98263 1.19639 0.91339 1.26001 0.95993 1.02505 0.94799 1.70124 1.31231 1.32115 1.22392 0.85485 0.78332 0.78404 0.79050 1.19692 1.21624 1.18245 1.21940 0.94237 0.81628 1.02002 1.21103 0.91192 0.82813 1.15467 1.44036 0.98553 1.02885 0.99633 1.94523 1.56461 1.65715 1.20914 1.94541 1.58018 1.66287 1.20889 0.88639 0.85055 0.94263 0.77964 0.77651 0.81038 0.87435 0.87939 0.94295 0.86733 0.92787 0.91397 0.93199 0.93029 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.77 71.23 0.70 -1.47 16 2 C -0.05 -0.92 5.87 -19.90 -0.12 -1.04 16 3 C -0.07 -0.63 9.69 22.33 0.22 -0.41 16 4 C -0.05 -0.40 10.03 22.23 0.22 -0.18 16 5 C -0.08 -1.44 7.44 22.53 0.17 -1.28 16 6 C -0.10 -3.10 4.88 -20.09 -0.10 -3.19 16 7 C 0.52 23.34 6.83 86.79 0.59 23.93 16 8 O -0.58 -33.34 15.87 -3.87 -0.06 -33.40 16 9 N -0.59 -24.87 2.97 -821.48 -2.44 -27.31 16 10 C 0.09 2.57 5.53 86.36 0.48 3.05 16 11 C -0.13 -3.86 6.08 30.67 0.19 -3.67 16 12 C -0.10 -4.06 5.10 30.62 0.16 -3.90 16 13 C 0.04 2.03 2.26 -11.31 -0.03 2.01 16 14 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 15 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 17 C 0.01 0.36 5.30 84.65 0.45 0.81 16 18 N -0.92 -59.49 11.41 21.45 0.24 -59.24 16 19 Si 0.96 45.84 29.54 68.60 2.03 47.86 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 C 0.12 6.46 5.42 86.51 0.47 6.92 16 24 C -0.03 -0.83 6.11 36.63 0.22 -0.60 16 25 N 0.02 0.99 2.41 -45.85 -0.11 0.88 16 26 O -0.15 -7.09 19.00 19.16 0.36 -6.73 16 27 O -0.18 -8.50 19.12 18.87 0.36 -8.14 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.13 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.04 0.90 7.31 -2.39 -0.02 0.89 16 31 H 0.20 -0.31 8.06 -2.91 -0.02 -0.34 16 32 H 0.21 -0.66 8.06 -2.91 -0.02 -0.69 16 33 H 0.17 2.22 7.37 -2.91 -0.02 2.20 16 34 H 0.11 2.28 4.74 -2.39 -0.01 2.27 16 35 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 41 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.07 4.48 5.17 -2.39 -0.01 4.47 16 Total: -1.00 -94.77 350.50 5.27 -89.50 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.04 Total: 5.77 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 3.84 Total: -9.19 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.30 Total: -85.67 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: 0.66 Total: -48.27 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -94.77 5.27 -89.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397627824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.555 kcal (2) G-P(sol) polarization free energy of solvation -94.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds