Wall clock time and date at job start Tue Mar 31 2020 13:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39594 * 120.07439 * 2 1 4 4 C 1.47848 * 120.14558 * 0.02562 * 3 2 1 5 5 O 1.21557 * 119.99639 * 58.73743 * 4 3 2 6 6 N 1.34771 * 120.00135 * 238.74207 * 4 3 2 7 7 C 1.46931 * 120.63028 * 4.68202 * 6 4 3 8 8 C 1.53195 * 108.77102 * 126.37092 * 7 6 4 9 9 C 1.53037 * 109.31201 * 54.63912 * 8 7 6 10 10 C 1.53044 * 109.53949 * 298.62992 * 9 8 7 11 11 H 1.09000 * 109.49443 * 301.41794 * 10 9 8 12 12 C 1.50696 * 109.49801 * 181.35161 * 10 9 8 13 13 H 1.08002 * 120.00348 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99668 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00410 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99826 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46794 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46957 * 119.99800 * 16 14 12 19 19 H 1.48495 * 109.46968 * 240.00182 * 16 14 12 20 20 C 1.46925 * 120.63258 * 184.40973 * 6 4 3 21 21 C 1.39561 * 119.71198 * 180.02562 * 3 2 1 22 22 C 1.37976 * 119.85190 * 359.97438 * 21 3 2 23 23 C 1.38340 * 120.14721 * 0.02562 * 22 21 3 24 24 C 1.37940 * 120.07162 * 179.72581 * 2 1 3 25 25 N 1.48008 * 119.92644 * 359.97438 * 24 2 1 26 26 O 1.21804 * 119.99971 * 178.23431 * 25 24 2 27 27 O 1.21807 * 120.00483 * 358.23766 * 25 24 2 28 28 H 1.08997 * 109.47151 * 98.17109 * 1 2 3 29 29 H 1.09003 * 109.46927 * 338.17870 * 1 2 3 30 30 H 1.09001 * 109.47459 * 218.17611 * 1 2 3 31 31 H 1.08994 * 109.58774 * 246.15782 * 7 6 4 32 32 H 1.09001 * 109.58633 * 6.44240 * 7 6 4 33 33 H 1.09001 * 109.49308 * 174.58658 * 8 7 6 34 34 H 1.08993 * 109.49710 * 294.68554 * 8 7 6 35 35 H 1.09004 * 109.46226 * 58.65284 * 9 8 7 36 36 H 1.08998 * 109.45974 * 178.61190 * 9 8 7 37 37 H 0.96997 * 120.00289 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.58405 * 353.41416 * 20 6 4 39 39 H 1.08996 * 109.58784 * 113.83864 * 20 6 4 40 40 H 1.07994 * 120.06856 * 180.02562 * 21 3 2 41 41 H 1.07999 * 119.92706 * 180.02562 * 22 21 3 42 42 H 1.07992 * 119.85869 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2080 0.0000 4 6 1.4722 2.4912 0.0006 5 8 0.6965 2.7472 0.9008 6 7 1.6628 3.3771 -0.9970 7 6 2.5176 3.0408 -2.1438 8 6 1.7231 3.2669 -3.4339 9 6 1.1828 4.6986 -3.4513 10 6 0.2418 4.9051 -2.2622 11 1 -0.5759 4.1864 -2.3164 12 6 -0.3155 6.3047 -2.2988 13 1 -0.0279 6.9800 -3.0911 14 6 -1.1926 6.7233 -1.3207 15 7 -1.5432 5.9010 -0.3562 16 14 -1.8828 8.4586 -1.3657 17 1 -1.3364 9.1782 -2.5442 18 1 -3.3633 8.4000 -1.4648 19 1 -1.4978 9.1768 -0.1243 20 6 1.0150 4.6954 -0.9615 21 6 3.6021 1.1992 -0.0005 22 6 4.2813 -0.0018 -0.0005 23 6 3.5820 -1.1955 -0.0005 24 6 2.1982 -1.1937 0.0057 25 7 1.4581 -2.4755 0.0124 26 8 2.0667 -3.5302 -0.0150 27 8 0.2405 -2.4756 0.0453 28 1 -0.3633 -0.1461 -1.0172 29 1 -0.3633 0.9541 0.3820 30 1 -0.3634 -0.8078 0.6352 31 1 3.4003 3.6801 -2.1415 32 1 2.8226 1.9964 -2.0783 33 1 2.3748 3.1136 -4.2941 34 1 0.8915 2.5637 -3.4770 35 1 2.0135 5.4011 -3.3832 36 1 0.6379 4.8699 -4.3796 37 1 -2.1600 6.1956 0.3321 38 1 0.3267 4.7417 -0.1174 39 1 1.7727 5.4723 -0.8607 40 1 4.1491 2.1304 -0.0001 41 1 5.3613 -0.0101 -0.0005 42 1 4.1184 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397640213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:30 Heat of formation + Delta-G solvation = -12.282853 kcal Electronic energy + Delta-G solvation = -27259.620780 eV Core-core repulsion = 23400.909429 eV Total energy + Delta-G solvation = -3858.711350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35524 -40.53143 -38.70824 -36.90314 -36.71761 -33.67506 -33.21048 -32.31408 -31.70260 -29.90279 -28.07262 -26.22238 -25.32538 -25.09029 -23.09706 -22.32380 -21.91124 -20.32459 -19.24109 -18.70528 -18.20510 -17.66090 -16.83665 -16.42919 -16.19170 -16.07257 -15.53962 -14.67685 -14.26547 -14.04539 -13.91563 -13.82293 -13.50468 -12.97546 -12.85122 -12.74825 -12.64631 -12.46829 -12.25440 -11.99793 -11.91297 -11.44174 -11.20332 -11.12045 -11.03010 -10.65219 -10.59215 -10.52006 -10.34524 -10.02840 -9.82380 -9.57818 -9.30210 -9.19143 -9.04204 -8.53509 -7.97008 -6.08516 -4.17624 -0.30910 0.53816 1.17040 1.27524 2.73389 3.06878 3.24844 3.33677 3.36159 3.43471 4.14160 4.17858 4.36109 4.41462 4.52360 4.60905 4.89398 5.11501 5.18112 5.22272 5.26823 5.33397 5.50507 5.55200 5.64551 5.68383 5.81633 5.90585 5.98283 6.03378 6.14495 6.17388 6.47291 6.51227 6.51614 6.70929 6.84513 6.95778 7.07301 7.51336 7.58422 7.74564 7.86121 8.01809 8.26960 8.53331 8.86762 9.48879 10.96836 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.003553 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.870695 B = 7878.420643 C = 8363.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.031 3.969 3 C -0.117 4.117 4 C 0.550 3.450 5 O -0.517 6.517 6 N -0.593 5.593 7 C 0.105 3.895 8 C -0.134 4.134 9 C -0.111 4.111 10 C 0.039 3.961 11 H 0.030 0.970 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.111 3.889 21 C -0.036 4.036 22 C -0.130 4.130 23 C -0.043 4.043 24 C -0.055 4.055 25 N 0.035 4.965 26 O -0.171 6.171 27 O -0.154 6.154 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.264 0.736 38 H 0.126 0.874 39 H 0.047 0.953 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.161 -11.529 -1.391 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 C -0.121 4.121 4 C 0.336 3.664 5 O -0.393 6.393 6 N -0.325 5.325 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.149 4.149 10 C 0.020 3.980 11 H 0.048 0.952 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.009 4.009 21 C -0.055 4.055 22 C -0.148 4.148 23 C -0.062 4.062 24 C -0.139 4.139 25 N 0.552 4.448 26 O -0.384 6.384 27 O -0.369 6.369 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.065 0.935 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.972 -10.766 -0.752 16.874 hybrid contribution -0.391 0.557 -0.073 0.684 sum 12.581 -10.209 -0.825 16.223 Atomic orbital electron populations 1.21639 0.87756 1.07084 1.04664 1.19874 0.98584 0.89144 0.89537 1.20146 0.94039 0.93876 1.04023 1.17944 0.82389 0.82738 0.83363 1.90846 1.35371 1.76793 1.36336 1.48529 1.47408 1.17381 1.19177 1.21755 0.93482 0.99829 0.86799 1.21942 0.99596 0.99991 0.95664 1.21635 0.99456 0.93107 1.00652 1.18901 0.92819 0.97467 0.88782 0.95213 1.21092 1.26643 0.97518 1.10755 0.92226 1.25055 0.96016 0.97480 0.95435 1.69872 1.33714 1.34943 1.13220 0.86528 0.78914 0.84584 0.77955 1.19772 1.20938 1.20940 1.22344 0.95895 0.77467 1.05160 1.21769 0.92766 0.99643 0.91326 1.21096 1.01049 0.90453 1.02215 1.21138 0.90757 1.00960 0.93345 1.20826 0.92417 0.83247 1.17398 1.43521 1.01234 1.02578 0.97475 1.94513 1.70119 1.19717 1.54033 1.94497 0.95553 1.93828 1.53018 0.89333 0.88333 0.87513 0.91604 0.91385 0.92018 0.92107 0.93061 0.92810 0.92591 0.85651 0.93499 0.83504 0.83101 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.51 36.01 0.31 -2.05 16 2 C 0.03 0.44 5.91 -104.23 -0.62 -0.18 16 3 C -0.12 -1.64 4.44 -104.97 -0.47 -2.11 16 4 C 0.55 10.11 6.34 -12.33 -0.08 10.03 16 5 O -0.52 -11.72 14.81 5.32 0.08 -11.65 16 6 N -0.59 -10.76 2.98 -174.14 -0.52 -11.28 16 7 C 0.10 1.46 5.84 -3.71 -0.02 1.44 16 8 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 9 C -0.11 -2.05 5.11 -26.69 -0.14 -2.19 16 10 C 0.04 0.92 2.24 -91.87 -0.21 0.71 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -13.52 8.57 -34.44 -0.30 -13.82 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.88 -24.74 11.39 55.43 0.63 -24.11 16 16 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.49 5.39 -3.93 -0.02 2.47 16 21 C -0.04 -0.37 8.00 -39.18 -0.31 -0.68 16 22 C -0.13 -1.01 10.03 -39.64 -0.40 -1.40 16 23 C -0.04 -0.40 9.55 -39.49 -0.38 -0.78 16 24 C -0.06 -0.70 6.84 -80.01 -0.55 -1.25 16 25 N 0.04 0.50 4.45 33.93 0.15 0.65 16 26 O -0.17 -2.39 18.44 -29.46 -0.54 -2.93 16 27 O -0.15 -2.32 15.27 -29.46 -0.45 -2.77 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.10 1.75 5.64 -51.93 -0.29 1.46 16 30 H 0.11 1.55 5.65 -51.93 -0.29 1.26 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.80 5.51 -51.93 -0.29 0.51 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.13 3.33 5.10 -51.92 -0.27 3.07 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.15 1.22 8.01 -52.49 -0.42 0.80 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -30.47 343.12 -9.23 -39.70 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.30 Total: 2.01 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.43 Total: -10.38 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.26 Total: -34.74 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.91 Total: -17.35 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.47 -9.23 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397640213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.418 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds