Wall clock time and date at job start Tue Mar 31 2020 13:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39594 * 120.07439 * 2 1 4 4 C 1.47848 * 120.14558 * 0.02562 * 3 2 1 5 5 O 1.21557 * 119.99639 * 58.73743 * 4 3 2 6 6 N 1.34771 * 120.00135 * 238.74207 * 4 3 2 7 7 C 1.46931 * 120.63028 * 4.68202 * 6 4 3 8 8 C 1.53195 * 108.77102 * 126.37092 * 7 6 4 9 9 C 1.53037 * 109.31201 * 54.63912 * 8 7 6 10 10 C 1.53044 * 109.53949 * 298.62992 * 9 8 7 11 11 H 1.09000 * 109.49443 * 301.41794 * 10 9 8 12 12 C 1.50696 * 109.49801 * 181.35161 * 10 9 8 13 13 H 1.08002 * 120.00348 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99668 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00410 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99826 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46794 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46957 * 119.99800 * 16 14 12 19 19 H 1.48495 * 109.46968 * 240.00182 * 16 14 12 20 20 C 1.46925 * 120.63258 * 184.40973 * 6 4 3 21 21 C 1.39561 * 119.71198 * 180.02562 * 3 2 1 22 22 C 1.37976 * 119.85190 * 359.97438 * 21 3 2 23 23 C 1.38340 * 120.14721 * 0.02562 * 22 21 3 24 24 C 1.37940 * 120.07162 * 179.72581 * 2 1 3 25 25 N 1.48008 * 119.92644 * 359.97438 * 24 2 1 26 26 O 1.21804 * 119.99971 * 178.23431 * 25 24 2 27 27 O 1.21807 * 120.00483 * 358.23766 * 25 24 2 28 28 H 1.08997 * 109.47151 * 98.17109 * 1 2 3 29 29 H 1.09003 * 109.46927 * 338.17870 * 1 2 3 30 30 H 1.09001 * 109.47459 * 218.17611 * 1 2 3 31 31 H 1.08994 * 109.58774 * 246.15782 * 7 6 4 32 32 H 1.09001 * 109.58633 * 6.44240 * 7 6 4 33 33 H 1.09001 * 109.49308 * 174.58658 * 8 7 6 34 34 H 1.08993 * 109.49710 * 294.68554 * 8 7 6 35 35 H 1.09004 * 109.46226 * 58.65284 * 9 8 7 36 36 H 1.08998 * 109.45974 * 178.61190 * 9 8 7 37 37 H 0.96997 * 120.00289 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.58405 * 353.41416 * 20 6 4 39 39 H 1.08996 * 109.58784 * 113.83864 * 20 6 4 40 40 H 1.07994 * 120.06856 * 180.02562 * 21 3 2 41 41 H 1.07999 * 119.92706 * 180.02562 * 22 21 3 42 42 H 1.07992 * 119.85869 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2080 0.0000 4 6 1.4722 2.4912 0.0006 5 8 0.6965 2.7472 0.9008 6 7 1.6628 3.3771 -0.9970 7 6 2.5176 3.0408 -2.1438 8 6 1.7231 3.2669 -3.4339 9 6 1.1828 4.6986 -3.4513 10 6 0.2418 4.9051 -2.2622 11 1 -0.5759 4.1864 -2.3164 12 6 -0.3155 6.3047 -2.2988 13 1 -0.0279 6.9800 -3.0911 14 6 -1.1926 6.7233 -1.3207 15 7 -1.5432 5.9010 -0.3562 16 14 -1.8828 8.4586 -1.3657 17 1 -1.3364 9.1782 -2.5442 18 1 -3.3633 8.4000 -1.4648 19 1 -1.4978 9.1768 -0.1243 20 6 1.0150 4.6954 -0.9615 21 6 3.6021 1.1992 -0.0005 22 6 4.2813 -0.0018 -0.0005 23 6 3.5820 -1.1955 -0.0005 24 6 2.1982 -1.1937 0.0057 25 7 1.4581 -2.4755 0.0124 26 8 2.0667 -3.5302 -0.0150 27 8 0.2405 -2.4756 0.0453 28 1 -0.3633 -0.1461 -1.0172 29 1 -0.3633 0.9541 0.3820 30 1 -0.3634 -0.8078 0.6352 31 1 3.4003 3.6801 -2.1415 32 1 2.8226 1.9964 -2.0783 33 1 2.3748 3.1136 -4.2941 34 1 0.8915 2.5637 -3.4770 35 1 2.0135 5.4011 -3.3832 36 1 0.6379 4.8699 -4.3796 37 1 -2.1600 6.1956 0.3321 38 1 0.3267 4.7417 -0.1174 39 1 1.7727 5.4723 -0.8607 40 1 4.1491 2.1304 -0.0001 41 1 5.3613 -0.0101 -0.0005 42 1 4.1184 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397640213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:29 Heat of formation + Delta-G solvation = -29.604657 kcal Electronic energy + Delta-G solvation = -27260.371909 eV Core-core repulsion = 23400.909429 eV Total energy + Delta-G solvation = -3859.462480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.39395 -41.74443 -39.90297 -38.39186 -37.81636 -35.41336 -34.20022 -33.74336 -32.93175 -31.54687 -29.17488 -27.26899 -27.10207 -26.48941 -24.29037 -23.58090 -23.15243 -21.66507 -20.54441 -19.72559 -19.51846 -18.71017 -18.48461 -17.79762 -17.33505 -17.11221 -16.90783 -16.53422 -15.64667 -15.27599 -15.12580 -15.02957 -14.67151 -14.55779 -14.34979 -14.04315 -13.91738 -13.56748 -13.39318 -13.37729 -13.02195 -12.92836 -12.71749 -12.53712 -12.31582 -12.30354 -12.24765 -11.89466 -11.75374 -11.66419 -11.20774 -11.00031 -10.86432 -10.61253 -10.54204 -10.20456 -9.52117 -8.13352 -6.30494 -1.28417 -0.38174 0.20948 0.29143 1.38313 1.40845 1.49541 1.52225 1.95140 2.22765 2.40512 3.11662 3.17690 3.23926 3.52923 3.58737 3.82743 3.97427 4.00028 4.11310 4.24059 4.34558 4.36858 4.40429 4.55108 4.68382 4.73359 4.76250 4.81163 4.84330 4.90233 4.96803 5.05684 5.17072 5.20652 5.22927 5.31759 5.45784 5.49211 5.58588 5.86982 5.97220 6.29509 6.48298 6.49636 6.82689 7.10920 7.40409 8.90031 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.003553 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.870695 B = 7878.420643 C = 8363.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.011 3.989 3 C -0.135 4.135 4 C 0.547 3.453 5 O -0.577 6.577 6 N -0.596 5.596 7 C 0.101 3.899 8 C -0.129 4.129 9 C -0.105 4.105 10 C 0.037 3.963 11 H -0.018 1.018 12 C -0.534 4.534 13 H 0.063 0.937 14 C 0.011 3.989 15 N -0.915 5.915 16 Si 0.956 3.044 17 H -0.259 1.259 18 H -0.286 1.286 19 H -0.282 1.282 20 C 0.125 3.875 21 C -0.023 4.023 22 C -0.098 4.098 23 C -0.026 4.026 24 C -0.066 4.066 25 N 0.035 4.965 26 O -0.147 6.147 27 O -0.205 6.205 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.173 0.827 41 H 0.208 0.792 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.167 -12.412 -2.850 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 C -0.139 4.139 4 C 0.335 3.665 5 O -0.458 6.458 6 N -0.326 5.326 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.142 4.142 10 C 0.017 3.983 11 H 0.000 1.000 12 C -0.572 4.572 13 H 0.082 0.918 14 C -0.189 4.189 15 N -0.554 5.554 16 Si 0.782 3.218 17 H -0.183 1.183 18 H -0.212 1.212 19 H -0.208 1.208 20 C 0.003 3.997 21 C -0.041 4.041 22 C -0.115 4.115 23 C -0.045 4.045 24 C -0.149 4.149 25 N 0.548 4.452 26 O -0.369 6.369 27 O -0.408 6.408 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.191 0.809 41 H 0.224 0.776 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.914 -11.623 -2.256 21.473 hybrid contribution -1.815 0.756 0.359 1.999 sum 16.099 -10.866 -1.896 19.515 Atomic orbital electron populations 1.21445 0.90000 1.04758 1.04274 1.19669 0.97433 0.90328 0.91644 1.19725 0.95663 0.90937 1.07576 1.18629 0.81667 0.83984 0.82265 1.90809 1.38038 1.78248 1.38661 1.48491 1.47559 1.15884 1.20671 1.22118 0.93281 1.02470 0.84155 1.21923 0.99934 0.96664 0.98145 1.21514 0.98671 0.96223 0.97813 1.18841 0.92748 0.94958 0.91708 1.00009 1.21533 1.26479 0.98806 1.10391 0.91843 1.25876 0.96616 1.01198 0.95170 1.70082 1.34462 1.36855 1.14008 0.85530 0.77868 0.80159 0.78269 1.18327 1.21178 1.20761 1.21703 0.95207 0.80070 1.02716 1.22136 0.90512 1.02136 0.89329 1.21677 1.03275 0.88160 0.98421 1.21695 0.88892 1.03247 0.90638 1.20946 0.93572 0.81588 1.18837 1.43777 1.01188 1.03147 0.97051 1.94467 1.69819 1.20330 1.52250 1.94519 0.96348 1.94122 1.55821 0.89710 0.92041 0.87585 0.88408 0.88264 0.87533 0.93950 0.91709 0.93182 0.93162 0.90443 0.93339 0.80924 0.77553 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 8.51 71.24 0.61 -4.38 16 2 C 0.01 0.32 5.91 -19.61 -0.12 0.21 16 3 C -0.14 -3.65 4.44 -20.09 -0.09 -3.74 16 4 C 0.55 20.88 6.34 86.79 0.55 21.43 16 5 O -0.58 -28.59 14.81 -3.90 -0.06 -28.65 16 6 N -0.60 -21.85 2.98 -823.13 -2.45 -24.30 16 7 C 0.10 2.51 5.84 86.36 0.50 3.01 16 8 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 9 C -0.10 -3.80 5.11 30.62 0.16 -3.64 16 10 C 0.04 1.79 2.24 -11.61 -0.03 1.76 16 11 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 12 C -0.53 -28.60 8.57 25.60 0.22 -28.38 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.01 0.60 5.31 84.66 0.45 1.05 16 15 N -0.92 -54.96 11.39 21.45 0.24 -54.72 16 16 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 C 0.12 5.88 5.39 86.22 0.46 6.34 16 21 C -0.02 -0.35 8.00 22.53 0.18 -0.17 16 22 C -0.10 -0.83 10.03 22.23 0.22 -0.60 16 23 C -0.03 -0.34 9.55 22.33 0.21 -0.13 16 24 C -0.07 -1.53 6.84 36.34 0.25 -1.28 16 25 N 0.03 0.95 4.45 -46.55 -0.21 0.75 16 26 O -0.15 -3.76 18.44 18.88 0.35 -3.41 16 27 O -0.21 -6.45 15.27 18.88 0.29 -6.16 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 2.50 5.64 -2.39 -0.01 2.48 16 30 H 0.11 3.47 5.65 -2.39 -0.01 3.45 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 1.88 5.51 -2.39 -0.01 1.87 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.08 4.46 5.10 -2.38 -0.01 4.45 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.17 1.83 8.01 -2.91 -0.02 1.80 16 41 H 0.21 -0.30 8.06 -2.91 -0.02 -0.33 16 42 H 0.19 1.41 7.60 -2.91 -0.02 1.39 16 Total: -1.00 -76.87 343.12 5.01 -71.86 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.05 Total: 10.94 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 3.77 Total: -11.88 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.41 Total: -78.28 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: 0.58 Total: -38.23 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -76.87 5.01 -71.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397640213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.252 kcal (2) G-P(sol) polarization free energy of solvation -76.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds